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LOCUS XM_013242963 5198 bp mRNA linear INV 02-SEP-2023 (LOC106081175), transcript variant X4, mRNA. ACCESSION XM_013242963 VERSION XM_013242963.2 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Sep 2, 2023 this sequence version replaced XM_013242963.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5198 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..5198 /gene="LOC106081175" /note="transcriptional regulator ovo; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins" /db_xref="GeneID:106081175" CDS 141..3983 /gene="LOC106081175" /codon_start=1 /product="transcriptional regulator ovo isoform X4" /protein_id="XP_013098417.2" /db_xref="GeneID:106081175" /translation="MLDETCYSDFFLQELEKTSFMRNHVIKIEPYKWDYLIWCNICGN VGPVTSLCEKDRLSPPVTTATTTTTAASSTEACHSRSSSPAFSPIVDRVATCSSSLKQ LQDCPDSFSKAINPKAEDQPQQLKQSLEELNDSPKSASPKHRYISSYKKSLIGGVVLT QAQRKEYPLEIVQKIQKENTTVFAQQQQQLRPIDENSDSDSDSDDGSKLIVDEKPLVP EEQPLSLRVRSSPPPEDKRPSPPPCPEPAVRCSVIQRTPSNLEENQRRRRSHEVFLPL GNLEHLGPEQQEPIDYHVPRRRSTLDNDEEQLLNAKRLERERKLREARRRSALLAART ILAQAKVNPRFIRSLPGILAAAAGHGRTTSGSNGSNQGQGFQNGFGGSNGSGSQQHSS GGGGSPTGFGGSGGLSGGAGGGGMGGGRDGRGNYGPNSPPSGALPPFYESLKSGNTMN GSSTTNFNSSATSNFLQQNAAAYLMSAASNGGGSSGGGGVGQQYNSSSGGDNMGGGGG ISSAPNLTGSSSLDQATPSASSMLFANGHGNNSLPYSSLANCAKYNQPSSPSSAASPP QPNYPPHLPYGPNPSAYGIILKDEPDLEEYEEKIDIGAFAQNIIQATMGNSGNFNASA FEDAIMPDLASAAQGPNGAMVDSLQFTANLILSSQTDHLLEQLSNAVDLSSFLQRNCV DDENSTSPRQDFELVSTPSLTPDSVSITPVDCHNSSTLQLDTFHENLMQQLTNNITRT QQTAANYAPYERHQQQQQHQMQQQHQQQPPPSYQHATRDIMQMQQQHHQHQQNGYQQN QATQPLNSLLNQNNLLMQQQQQHYQQQQQQHGNSYHHMQQQQQSQHSHQQHALSLNQH QLQQQQQQHLPHHHGGHGHHSQLGSNSNGHHPGPHHLMQHHSDNSNLSLPSPNSSSAI STTANGHMMIPSQSHHPMSSAASNTSSGSASAAALLDTSLLDAKPIIQSVSPTNSATS GSSRYCSSSCSSSSSTNSSYKQKRSVTVATASMAAAAAVAASASCLTSPTVAKLHESK VLQQRLGLPPEVQLEFVNGGHGIKNPLAIENSHGHHHHRIRSIDCVDDMKKPLISDTS MNGSIGGNSNSSCSSSNGNGVISGMNNNENNVQEPSNFVCRICLKSFTLKRLLNRHMK CHSEIKRYLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCNLCEKSFTQRCSLESHCLKV HSMQHQYAYKERRTKMYVCEECGHTTCEPEVHYIHLKENHPYSPALLKFYDKRHFKFN NSQFANNLLGQLPMPVHN" polyA_site 5198 /gene="LOC106081175" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 tttttattaa atattgcaaa ataacatttg gctgcttaaa catattaaat gaatctgacg 61 attgttaagc tgtgtaaatg aacaactcct tcacataggg tagattgaag tcttgcttct 121 gacagtgtac gttgtgcagc atgttggacg aaacgtgtta tagtgatttc ttcttgcaag 181 agttagaaaa aacatccttt atgaggaatc atgtgattaa aattgagccc tacaaatggg 241 attatttaat atggtgcaat atatgtggca atgttggtcc tgtcacatct ttatgcgaaa 301 aggatcgctt gtcacctcca gtaaccacag ctaccaccac tactaccgct gcaagctcaa 361 cggaagcttg tcattctcgt tcatcatcac ctgccttctc ccccattgtc gacagagtcg 421 ctacctgctc atcatcttta aaacagctac aagactgccc tgattctttt tccaaagcta 481 taaatccaaa ggctgaagat caaccacaac aattaaagca atcgctggaa gagctcaacg 541 atagccccaa atccgcctca ccaaaacatc gttatatttc atcttacaaa aaatctttga 601 ttggcggtgt cgttctaaca caagcacaac gcaaagaata tccattggaa attgtgcaaa 661 aaatacaaaa agagaacaca accgtgtttg cgcaacagca gcaacaacta cgaccaatcg 721 atgaaaactc cgattcggat tccgactcgg atgatggctc aaagttgatt gtagatgaaa 781 aacccttggt tcccgaagaa caaccattat cgttgagagt gcgatcatct ccgccacctg 841 aagacaagcg tccatcacca cctccttgtc ctgaaccagc agtaaggtgc agcgttattc 901 aacgtacacc ttcgaatttg gaagaaaacc aaagaagacg tcgatcgcat gaagtttttt 961 tgcctttggg taatttagag cacttgggcc ctgaacaaca agaacccatt gattatcacg 1021 tgcctcgacg taggtcaact cttgacaacg acgaggagca gcttttgaat gctaagcgct 1081 tggaaaggga gcgtaaattg agagaagcgc gccgcagaag tgccttattg gctgcccgta 1141 ctatattggc tcaggctaag gttaatccac gttttataag atccttgccg ggaattttgg 1201 cggctgctgc tggacacggt cgtaccacat ctggttcaaa cggaagcaat caaggtcagg 1261 gattccaaaa cggatttggt ggctcgaacg gttcaggttc tcaacagcac tcgagtggtg 1321 gtggtggttc acccacaggt ttcggcggat caggtggtct tagtggcgga gcaggcggcg 1381 gcggtatggg cggaggtcgt gatggtcgag gcaactatgg ccccaattca ccaccatctg 1441 gagctttacc ccctttttat gagtcattga aaagtggcaa taccatgaac ggctcctcga 1501 ccaccaattt caattcatct gcaacttcaa actttttaca acaaaatgct gcagcttatt 1561 taatgtccgc cgctagtaat ggtggtggta gtagtggtgg cggtggtgtt ggtcaacaat 1621 acaactcttc ttcgggaggt gacaatatgg gtggcggcgg tggaatttcg tccgcaccca 1681 accttacagg atcatcttca ttggatcaag caacaccgtc tgcgtctagc atgcttttcg 1741 ctaacggtca tggtaataat tctcttcctt acagttcttt agctaattgc gctaaatata 1801 atcaaccttc ttctccttct tcggctgcct ctccaccgca acctaattac ccaccgcatt 1861 taccatacgg tcccaaccct tcagcatatg gcataattct aaaagatgaa ccagatctgg 1921 aggaatacga ggaaaagatt gatattggag cctttgcgca gaatatcata caggcaacaa 1981 tggggaattc gggaaatttt aatgcttcgg cctttgaaga tgctattatg ccggatttgg 2041 cttcagctgc acaaggaccg aacggtgcaa tggtggattc attgcaattt acggccaatt 2101 taatattatc ctcgcaaaca gatcatttgc ttgaacaact ctccaatgca gtcgatttga 2161 gttcattttt acaacgcaat tgtgtggacg atgaaaactc cacatcgccg cgacaagatt 2221 ttgagctggt ctcaactcct tccttgacac cagattcggt gtcaattaca ccggtagatt 2281 gtcataattc atcgacatta cagttggata ctttccatga gaatttaatg cagcagttaa 2341 ccaacaacat tacgcggaca caacaaactg cagccaatta cgcaccctac gaacgtcatc 2401 agcaacagca acagcaccaa atgcaacaac aacatcagca gcaacctcct ccatcttatc 2461 aacatgccac aagagatata atgcagatgc aacagcagca tcatcagcat cagcaaaatg 2521 gctatcaaca aaaccaagcc acgcaaccat taaacagttt acttaaccaa aataatctgc 2581 taatgcaaca acagcaacag cattatcagc agcaacaaca gcagcacggc aacagctatc 2641 atcatatgca acaacaacaa cagtcgcagc attctcatca acagcatgca ttgtctttga 2701 accaacatca gctgcagcag caacaacaac aacatctccc ccatcatcat gggggccatg 2761 gacatcactc tcagcttggc agcaatagca atggtcacca ccctggtccc catcacctaa 2821 tgcaacacca tagtgacaac agcaatctct cactgccctc gccaaattca tcctcagcaa 2881 tatctaccac tgccaatggt catatgatga taccatcaca aagtcatcac ccaatgtcat 2941 cggctgccag caacacatca tcaggttcag cttctgctgc tgcacttcta gatacatcgc 3001 tgctggacgc taagcccatc atacaaagtg taagtccaac taattctgct actagtggta 3061 gttcgcgata ttgttcctct tcttgctctt cgtcgtcgtc caccaactcg tcatataaac 3121 aaaaacgctc tgtaacagtt gccaccgctt ccatggcggc agctgctgct gttgctgctt 3181 cagcgtcatg tttaacttct cccactgttg ccaagttgca cgaaagcaaa gtgctacagc 3241 aacggttggg cttaccacca gaagtacaat tggaatttgt caacggcggt catggcatta 3301 aaaatccctt agccattgaa aattcgcatg gccatcatca ccatcgcata cgcagcattg 3361 actgtgtaga tgatatgaaa aagccactga tatccgatac atctatgaat ggtagcattg 3421 gtggcaacag taatagcagc tgcagcagca gcaatggaaa tggagtcatc tctggcatga 3481 acaataatga aaacaatgtc caagaaccat caaatttcgt ttgtcgcata tgcttaaaat 3541 ccttcacatt gaagcgactg ttgaatcgtc acatgaaatg tcattccgaa ataaaacgtt 3601 atttgtgtac attctgtggt aagggtttca atgatacatt tgatttgaaa cgacacacgc 3661 gtacccatac gggagttaga ccctacaagt gtaacttgtg tgagaagagc tttacacaaa 3721 gatgttctct ggaatcgcat tgccttaaag tgcatagtat gcagcatcaa tatgcctaca 3781 aagaaagaag aacaaagatg tatgtttgtg aggaatgcgg acacaccact tgtgaacccg 3841 aggttcatta tatacactta aaagaaaatc atccatactc gccggcttta ttaaagttct 3901 acgataaacg acatttcaaa tttaacaatt cacaatttgc caataattta ctgggacaac 3961 tgcctatgcc ggtgcataat taatagtagt aagaagcaac atcaaaacac ttccatgaga 4021 tatacaacaa aatgttaaat caaagaacaa aagaaaacta ttctttgtgt cttacaacca 4081 acaaaaccaa gttttccaaa aactgcctta aaaaaatcag agattatttt tacaagcctt 4141 aaataacgta aacgcactag cttattacat ttctcttccc tttgataatg ctttaaacta 4201 aaaacatgaa actttatttt gtttttccca atcaatcttt ttttatttaa tttttttttt 4261 tcttttgctg agcaaatcat gttgatagca ccaaaacggt tgattttgaa ttttatttca 4321 tattactttg agaaagcgaa aaataccgtt ttggggtttc ttctttttat ttattatttt 4381 tatttgttag atgtaaagag tttaaagtca tttgagagaa actaagatga aaaatcctta 4441 atttttttaa gttcttcttt ttgtataaat attttaatat ttttacattt atattttcga 4501 tataagtttc ttacatttaa atcctctcaa caaatgctgc tttaattttg tgaaaaaaaa 4561 aacaaaacca tgataatgaa acttataaag ttttttccca aaacacacac gcataccaca 4621 ctttattttt taaacatttt tagttaattg attatgtatt tttgttatgt aaaatgtaaa 4681 tatttttatt ataattatgt aacttaacat ctttttgcct cggttaagga tagttttatg 4741 attttcaaag ttctgatgag cgaaacattt tatagaaatg tttggtgtat aatatccaac 4801 acctccaatt ctctcaacaa atttcattat tatcccctta atgggtcttt tttgacagac 4861 tttgttatat tttatctatc cttagccgta acttgtacaa agtattttcc cccaattctt 4921 atctactggt gtatttttaa gaatttatat ttatttctta cttgatttct tttttttaat 4981 gaatttagtt ttacaaccaa ttttccattt tctaattttt taagttgtaa gcaaccaaat 5041 aagtagaaca catgttgaaa tgcttatcat aatatgctaa aaaaaaaaac aaaagttaga 5101 tgtaacatcg tgaactgtcc atacattgtg gagctaagga gaagaagtat atatgtcagc 5161 tggcaagaaa taaaatgaaa accaaaacca ttgttaaa