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LOCUS XM_013242962 6830 bp mRNA linear INV 02-SEP-2023 (LOC106081175), transcript variant X3, mRNA. ACCESSION XM_013242962 VERSION XM_013242962.2 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Sep 2, 2023 this sequence version replaced XM_013242962.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6830 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..6830 /gene="LOC106081175" /note="transcriptional regulator ovo; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 17 Proteins" /db_xref="GeneID:106081175" CDS 1440..5615 /gene="LOC106081175" /codon_start=1 /product="transcriptional regulator ovo isoform X3" /protein_id="XP_013098416.2" /db_xref="GeneID:106081175" /translation="MPKIFLIKNRLHQQQQRLLESQNLLQDKTDDDRLVPPLSPSHNR ERDRSTSPPSYHQARLQPFAEAKDFPRSRNASPSPSNIASTSDSLKALHIHNHQQQQQ KQNLNLARSRSQSPIGDVLDLHKKSPLSCNVTSNVSKLRATEDYEGDEEEQPLSLVSS LTYLGRKRFHQYHRNLRTSAASPTASSTTVATTAPSATTTTTTTIAATEIDKVDSNNA DKEKEENNEVGPVTSLCEKDRLSPPVTTATTTTTAASSTEACHSRSSSPAFSPIVDRV ATCSSSLKQLQDCPDSFSKAINPKAEDQPQQLKQSLEELNDSPKSASPKHRYISSYKK SLIGGVVLTQAQRKEYPLEIVQKIQKENTTVFAQQQQQLRPIDENSDSDSDSDDGSKL IVDEKPLVPEEQPLSLRVRSSPPPEDKRPSPPPCPEPAVRCSVIQRTPSNLEENQRRR RSHEVFLPLGNLEHLGPEQQEPIDYHVPRRRSTLDNDEEQLLNAKRLERERKLREARR RSALLAARTILAQAKVNPRFIRSLPGILAAAAGHGRTTSGSNGSNQGQGFQNGFGGSN GSGSQQHSSGGGGSPTGFGGSGGLSGGAGGGGMGGGRDGRGNYGPNSPPSGALPPFYE SLKSGNTMNGSSTTNFNSSATSNFLQQNAAAYLMSAASNGGGSSGGGGVGQQYNSSSG GDNMGGGGGISSAPNLTGSSSLDQATPSASSMLFANGHGNNSLPYSSLANCAKYNQPS SPSSAASPPQPNYPPHLPYGPNPSAYGIILKDEPDLEEYEEKIDIGAFAQNIIQATMG NSGNFNASAFEDAIMPDLASAAQGPNGAMVDSLQFTANLILSSQTDHLLEQLSNAVDL SSFLQRNCVDDENSTSPRQDFELVSTPSLTPDSVSITPVDCHNSSTLQLDTFHENLMQ QLTNNITRTQQTAANYAPYERHQQQQQHQMQQQHQQQPPPSYQHATRDIMQMQQQHHQ HQQNGYQQNQATQPLNSLLNQNNLLMQQQQQHYQQQQQQHGNSYHHMQQQQQSQHSHQ QHALSLNQHQLQQQQQQHLPHHHGGHGHHSQLGSNSNGHHPGPHHLMQHHSDNSNLSL PSPNSSSAISTTANGHMMIPSQSHHPMSSAASNTSSGSASAAALLDTSLLDAKPIIQS LGLPPEVQLEFVNGGHGIKNPLAIENSHGHHHHRIRSIDCVDDMKKPLISDTSMNGSI GGNSNSSCSSSNGNGVISGMNNNENNVQEPSNFVCRICLKSFTLKRLLNRHMKCHSEI KRYLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCNLCEKSFTQRCSLESHCLKVHSMQH QYAYKERRTKMYVCEECGHTTCEPEVHYIHLKENHPYSPALLKFYDKRHFKFNNSQFA NNLLGQLPMPVHN" polyA_site 6830 /gene="LOC106081175" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 gaactcgacg caatccatgg tgtagggttt ataagattca gctcggtcga atttagcacc 61 ttttttctta tttaatttca aattttcatt gtcccaaaaa caataaagcc attgaaccac 121 tgttcggctt acgatcagcg taaataatta caaagggggc ttggagctac caaccaccat 181 acaggtaact gagagcagag agcaagaagc gtatatgtga tcaccattga tggccgttga 241 ttttgcggca aatgtcggct ctccccatga actaagtcgt cattcctttt gaaacgttac 301 tcttggaaac aacgcggctt acggttgttt gcactaaagc agcggtgttt gtcgtacata 361 ccgcacacaa tcaatgtcgg tcgtttaaag tcgaaatgaa acgacgactc cgtacacttt 421 tctaagattc gctccttaga ctctagcagg cgaaaataaa aaaaatgtgc acaaagccgc 481 tcttctcacc tatacacctg agaataattc agacacacac acatatgcac acacaatttt 541 gctatgaaac gcaacggaac tgttaacaag tgaagacgac gacgacgaca gcgactatat 601 agtagaaaaa aaaggcagaa gaagcagaag aactactaaa caacaacaac aaccattact 661 ctaagttaaa tgtgtatgcc gccgtaccgt gtgcgctgtc tgaatagaca ctagacccgt 721 tgcttgttta gtaagagatg aaccgtcata gaggatacac gcgtttattc ttttaccaca 781 catagaaaga gagaaaaaaa aacaaaaatt gttcaagaag attttacacc ttttggttgg 841 gataaaagaa aactaacaga gaaagaagaa aaatccaagc taaagcattc ctaagtacac 901 atagagaatg gaaatgtgaa aaatccccac aaatggaata caaagaatat tggaaaattt 961 ttctaaagaa aaaatttaaa aaacacaaag aatgaaaatg tttaaaaaat taaacaaata 1021 acagaattgt gttggaaatt aaaaaaaaaa aaagtatttt aacacaaatt tttggggaaa 1081 aatacaattt gtaaaaatgt ggaagttaaa gaaatatcat caaaatacca gtgacaaagt 1141 gttttgagtg aaaagtaaaa acaaaaatta attttttgat aataaaacta aaactaaatt 1201 taaacaatga gaaaaaaatc caaaatataa acaaaaatca tccaaattaa tacaaaaaaa 1261 aaattgtgtt aacagttaat ttagcaatta aacacaccaa ggattagtgt taattgctaa 1321 aactgttgtt aaattacaaa aaagaaaaat acttaccaaa acaaacccaa caaacaagtg 1381 aagtgtgatt ggaaaacaac taaaacattt cgttttaact ttaaacataa ctcaacaaaa 1441 tgccgaaaat tttccttata aaaaatcgcc tgcatcagca gcagcaacgt ctattagaat 1501 cacaaaatct tttacaagat aaaaccgatg atgatcgtct ggtaccaccg cttagtccct 1561 cacataatcg tgagcgtgat cgttcaacat ctccaccgtc atatcatcaa gcgcgtctcc 1621 agccctttgc cgaggcgaag gattttccgc gttcacgcaa tgcatcaccc tcgccttcga 1681 atatcgcctc cacctctgat tccctcaaag ctttgcatat acacaatcat cagcagcagc 1741 aacaaaagca aaatcttaat ttggcccgct cgcgttctca atcacccata ggtgatgtct 1801 tagatttaca caaaaaatcc ccattgtcct gcaatgtcac atcgaatgtt tcaaaattgc 1861 gtgcaaccga agactatgag ggtgatgagg aggaacaacc tttgagtttg gtatcctcat 1921 taacctattt gggccgtaaa cgtttccatc aatatcatcg taatctaagg acttcagcgg 1981 catcaccaac agcgtcctca acgacagtgg cgacaacagc gccgtctgcg acgactacga 2041 ctacaacaac tatagcagca acggagatag ataaggttga cagcaataat gctgataagg 2101 aaaaggaaga gaataatgaa gttggtcctg tcacatcttt atgcgaaaag gatcgcttgt 2161 cacctccagt aaccacagct accaccacta ctaccgctgc aagctcaacg gaagcttgtc 2221 attctcgttc atcatcacct gccttctccc ccattgtcga cagagtcgct acctgctcat 2281 catctttaaa acagctacaa gactgccctg attctttttc caaagctata aatccaaagg 2341 ctgaagatca accacaacaa ttaaagcaat cgctggaaga gctcaacgat agccccaaat 2401 ccgcctcacc aaaacatcgt tatatttcat cttacaaaaa atctttgatt ggcggtgtcg 2461 ttctaacaca agcacaacgc aaagaatatc cattggaaat tgtgcaaaaa atacaaaaag 2521 agaacacaac cgtgtttgcg caacagcagc aacaactacg accaatcgat gaaaactccg 2581 attcggattc cgactcggat gatggctcaa agttgattgt agatgaaaaa cccttggttc 2641 ccgaagaaca accattatcg ttgagagtgc gatcatctcc gccacctgaa gacaagcgtc 2701 catcaccacc tccttgtcct gaaccagcag taaggtgcag cgttattcaa cgtacacctt 2761 cgaatttgga agaaaaccaa agaagacgtc gatcgcatga agtttttttg cctttgggta 2821 atttagagca cttgggccct gaacaacaag aacccattga ttatcacgtg cctcgacgta 2881 ggtcaactct tgacaacgac gaggagcagc ttttgaatgc taagcgcttg gaaagggagc 2941 gtaaattgag agaagcgcgc cgcagaagtg ccttattggc tgcccgtact atattggctc 3001 aggctaaggt taatccacgt tttataagat ccttgccggg aattttggcg gctgctgctg 3061 gacacggtcg taccacatct ggttcaaacg gaagcaatca aggtcaggga ttccaaaacg 3121 gatttggtgg ctcgaacggt tcaggttctc aacagcactc gagtggtggt ggtggttcac 3181 ccacaggttt cggcggatca ggtggtctta gtggcggagc aggcggcggc ggtatgggcg 3241 gaggtcgtga tggtcgaggc aactatggcc ccaattcacc accatctgga gctttacccc 3301 ctttttatga gtcattgaaa agtggcaata ccatgaacgg ctcctcgacc accaatttca 3361 attcatctgc aacttcaaac tttttacaac aaaatgctgc agcttattta atgtccgccg 3421 ctagtaatgg tggtggtagt agtggtggcg gtggtgttgg tcaacaatac aactcttctt 3481 cgggaggtga caatatgggt ggcggcggtg gaatttcgtc cgcacccaac cttacaggat 3541 catcttcatt ggatcaagca acaccgtctg cgtctagcat gcttttcgct aacggtcatg 3601 gtaataattc tcttccttac agttctttag ctaattgcgc taaatataat caaccttctt 3661 ctccttcttc ggctgcctct ccaccgcaac ctaattaccc accgcattta ccatacggtc 3721 ccaacccttc agcatatggc ataattctaa aagatgaacc agatctggag gaatacgagg 3781 aaaagattga tattggagcc tttgcgcaga atatcataca ggcaacaatg gggaattcgg 3841 gaaattttaa tgcttcggcc tttgaagatg ctattatgcc ggatttggct tcagctgcac 3901 aaggaccgaa cggtgcaatg gtggattcat tgcaatttac ggccaattta atattatcct 3961 cgcaaacaga tcatttgctt gaacaactct ccaatgcagt cgatttgagt tcatttttac 4021 aacgcaattg tgtggacgat gaaaactcca catcgccgcg acaagatttt gagctggtct 4081 caactccttc cttgacacca gattcggtgt caattacacc ggtagattgt cataattcat 4141 cgacattaca gttggatact ttccatgaga atttaatgca gcagttaacc aacaacatta 4201 cgcggacaca acaaactgca gccaattacg caccctacga acgtcatcag caacagcaac 4261 agcaccaaat gcaacaacaa catcagcagc aacctcctcc atcttatcaa catgccacaa 4321 gagatataat gcagatgcaa cagcagcatc atcagcatca gcaaaatggc tatcaacaaa 4381 accaagccac gcaaccatta aacagtttac ttaaccaaaa taatctgcta atgcaacaac 4441 agcaacagca ttatcagcag caacaacagc agcacggcaa cagctatcat catatgcaac 4501 aacaacaaca gtcgcagcat tctcatcaac agcatgcatt gtctttgaac caacatcagc 4561 tgcagcagca acaacaacaa catctccccc atcatcatgg gggccatgga catcactctc 4621 agcttggcag caatagcaat ggtcaccacc ctggtcccca tcacctaatg caacaccata 4681 gtgacaacag caatctctca ctgccctcgc caaattcatc ctcagcaata tctaccactg 4741 ccaatggtca tatgatgata ccatcacaaa gtcatcaccc aatgtcatcg gctgccagca 4801 acacatcatc aggttcagct tctgctgctg cacttctaga tacatcgctg ctggacgcta 4861 agcccatcat acaaagtttg ggcttaccac cagaagtaca attggaattt gtcaacggcg 4921 gtcatggcat taaaaatccc ttagccattg aaaattcgca tggccatcat caccatcgca 4981 tacgcagcat tgactgtgta gatgatatga aaaagccact gatatccgat acatctatga 5041 atggtagcat tggtggcaac agtaatagca gctgcagcag cagcaatgga aatggagtca 5101 tctctggcat gaacaataat gaaaacaatg tccaagaacc atcaaatttc gtttgtcgca 5161 tatgcttaaa atccttcaca ttgaagcgac tgttgaatcg tcacatgaaa tgtcattccg 5221 aaataaaacg ttatttgtgt acattctgtg gtaagggttt caatgataca tttgatttga 5281 aacgacacac gcgtacccat acgggagtta gaccctacaa gtgtaacttg tgtgagaaga 5341 gctttacaca aagatgttct ctggaatcgc attgccttaa agtgcatagt atgcagcatc 5401 aatatgccta caaagaaaga agaacaaaga tgtatgtttg tgaggaatgc ggacacacca 5461 cttgtgaacc cgaggttcat tatatacact taaaagaaaa tcatccatac tcgccggctt 5521 tattaaagtt ctacgataaa cgacatttca aatttaacaa ttcacaattt gccaataatt 5581 tactgggaca actgcctatg ccggtgcata attaatagta gtaagaagca acatcaaaac 5641 acttccatga gatatacaac aaaatgttaa atcaaagaac aaaagaaaac tattctttgt 5701 gtcttacaac caacaaaacc aagttttcca aaaactgcct taaaaaaatc agagattatt 5761 tttacaagcc ttaaataacg taaacgcact agcttattac atttctcttc cctttgataa 5821 tgctttaaac taaaaacatg aaactttatt ttgtttttcc caatcaatct ttttttattt 5881 aatttttttt tttcttttgc tgagcaaatc atgttgatag caccaaaacg gttgattttg 5941 aattttattt catattactt tgagaaagcg aaaaataccg ttttggggtt tcttcttttt 6001 atttattatt tttatttgtt agatgtaaag agtttaaagt catttgagag aaactaagat 6061 gaaaaatcct taattttttt aagttcttct ttttgtataa atattttaat atttttacat 6121 ttatattttc gatataagtt tcttacattt aaatcctctc aacaaatgct gctttaattt 6181 tgtgaaaaaa aaaacaaaac catgataatg aaacttataa agttttttcc caaaacacac 6241 acgcatacca cactttattt tttaaacatt tttagttaat tgattatgta tttttgttat 6301 gtaaaatgta aatattttta ttataattat gtaacttaac atctttttgc ctcggttaag 6361 gatagtttta tgattttcaa agttctgatg agcgaaacat tttatagaaa tgtttggtgt 6421 ataatatcca acacctccaa ttctctcaac aaatttcatt attatcccct taatgggtct 6481 tttttgacag actttgttat attttatcta tccttagccg taacttgtac aaagtatttt 6541 cccccaattc ttatctactg gtgtattttt aagaatttat atttatttct tacttgattt 6601 ctttttttta atgaatttag ttttacaacc aattttccat tttctaattt tttaagttgt 6661 aagcaaccaa ataagtagaa cacatgttga aatgcttatc ataatatgct aaaaaaaaaa 6721 acaaaagtta gatgtaacat cgtgaactgt ccatacattg tggagctaag gagaagaagt 6781 atatatgtca gctggcaaga aataaaatga aaaccaaaac cattgttaaa