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LOCUS XM_013242961 6916 bp mRNA linear INV 02-SEP-2023 (LOC106081175), transcript variant X2, mRNA. ACCESSION XM_013242961 VERSION XM_013242961.2 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Sep 2, 2023 this sequence version replaced XM_013242961.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6916 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..6916 /gene="LOC106081175" /note="transcriptional regulator ovo; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins" /db_xref="GeneID:106081175" CDS 1442..5701 /gene="LOC106081175" /codon_start=1 /product="transcriptional regulator ovo isoform X2" /protein_id="XP_013098415.2" /db_xref="GeneID:106081175" /translation="MPKIFLIKNRLHQQQQRLLESQNLLQDKTDDDRLVPPLSPSHNR ERDRSTSPPSYHQARLQPFAEAKDFPRSRNASPSPSNIASTSDSLKALHIHNHQQQQQ KQNLNLARSRSQSPIGDVLDLHKKSPLSCNVTSNVSKLRATEDYEGDEEEQPLSLVSS LTYLGRKRFHQYHRNLRTSAASPTASSTTVATTAPSATTTTTTTIAATEIDKVDSNNA DKEKEENNEVGPVTSLCEKDRLSPPVTTATTTTTAASSTEACHSRSSSPAFSPIVDRV ATCSSSLKQLQDCPDSFSKAINPKAEDQPQQLKQSLEELNDSPKSASPKHRYISSYKK SLIGGVVLTQAQRKEYPLEIVQKIQKENTTVFAQQQQQLRPIDENSDSDSDSDDGSKL IVDEKPLVPEEQPLSLRVRSSPPPEDKRPSPPPCPEPAVRCSVIQRTPSNLEENQRRR RSHEVFLPLGNLEHLGPEQQEPIDYHVPRRRSTLDNDEEQLLNAKRLERERKLREARR RSALLAARTILAQAKVNPRFIRSLPGILAAAAGHGRTTSGSNGSNQGQGFQNGFGGSN GSGSQQHSSGGGGSPTGFGGSGGLSGGAGGGGMGGGRDGRGNYGPNSPPSGALPPFYE SLKSGNTMNGSSTTNFNSSATSNFLQQNAAAYLMSAASNGGGSSGGGGVGQQYNSSSG GDNMGGGGGISSAPNLTGSSSLDQATPSASSMLFANGHAYGIILKDEPDLEEYEEKID IGAFAQNIIQATMGNSGNFNASAFEDAIMPDLASAAQGPNGAMVDSLQFTANLILSSQ TDHLLEQLSNAVDLSSFLQRNCVDDENSTSPRQDFELVSTPSLTPDSVSITPVDCHNS STLQLDTFHENLMQQLTNNITRTQQTAANYAPYERHQQQQQHQMQQQHQQQPPPSYQH ATRDIMQMQQQHHQHQQNGYQQNQATQPLNSLLNQNNLLMQQQQQHYQQQQQQHGNSY HHMQQQQQSQHSHQQHALSLNQHQLQQQQQQHLPHHHGGHGHHSQLGSNSNGHHPGPH HLMQHHSDNSNLSLPSPNSSSAISTTANGHMMIPSQSHHPMSSAASNTSSGSASAAAL LDTSLLDAKPIIQSVSPTNSATSGSSRYCSSSCSSSSSTNSSYKQKRSVTVATASMAA AAAVAASASCLTSPTVAKLHESKVLQQRLGLPPEVQLEFVNGGHGIKNPLAIENSHGH HHHRIRSIDCVDDMKKPLISDTSMNGSIGGNSNSSCSSSNGNGVISGMNNNENNVQEP SNFVCRICLKSFTLKRLLNRHMKCHSEIKRYLCTFCGKGFNDTFDLKRHTRTHTGVRP YKCNLCEKSFTQRCSLESHCLKVHSMQHQYAYKERRTKMYVCEECGHTTCEPEVHYIH LKENHPYSPALLKFYDKRHFKFNNSQFANNLLGQLPMPVHN" polyA_site 6916 /gene="LOC106081175" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 tagaactcga cgcaatccat ggtgtagggt ttataagatt cagctcggtc gaatttagca 61 ccttttttct tatttaattt caaattttca ttgtcccaaa aacaataaag ccattgaacc 121 actgttcggc ttacgatcag cgtaaataat tacaaagggg gcttggagct accaaccacc 181 atacaggtaa ctgagagcag agagcaagaa gcgtatatgt gatcaccatt gatggccgtt 241 gattttgcgg caaatgtcgg ctctccccat gaactaagtc gtcattcctt ttgaaacgtt 301 actcttggaa acaacgcggc ttacggttgt ttgcactaaa gcagcggtgt ttgtcgtaca 361 taccgcacac aatcaatgtc ggtcgtttaa agtcgaaatg aaacgacgac tccgtacact 421 tttctaagat tcgctcctta gactctagca ggcgaaaata aaaaaaatgt gcacaaagcc 481 gctcttctca cctatacacc tgagaataat tcagacacac acacatatgc acacacaatt 541 ttgctatgaa acgcaacgga actgttaaca agtgaagacg acgacgacga cagcgactat 601 atagtagaaa aaaaaggcag aagaagcaga agaactacta aacaacaaca acaaccatta 661 ctctaagtta aatgtgtatg ccgccgtacc gtgtgcgctg tctgaataga cactagaccc 721 gttgcttgtt tagtaagaga tgaaccgtca tagaggatac acgcgtttat tcttttacca 781 cacatagaaa gagagaaaaa aaaacaaaaa ttgttcaaga agattttaca ccttttggtt 841 gggataaaag aaaactaaca gagaaagaag aaaaatccaa gctaaagcat tcctaagtac 901 acatagagaa tggaaatgtg aaaaatcccc acaaatggaa tacaaagaat attggaaaat 961 ttttctaaag aaaaaattta aaaaacacaa agaatgaaaa tgtttaaaaa attaaacaaa 1021 taacagaatt gtgttggaaa ttaaaaaaaa aaaaagtatt ttaacacaaa tttttgggga 1081 aaaatacaat ttgtaaaaat gtggaagtta aagaaatatc atcaaaatac cagtgacaaa 1141 gtgttttgag tgaaaagtaa aaacaaaaat taattttttg ataataaaac taaaactaaa 1201 tttaaacaat gagaaaaaaa tccaaaatat aaacaaaaat catccaaatt aatacaaaaa 1261 aaaaattgtg ttaacagtta atttagcaat taaacacacc aaggattagt gttaattgct 1321 aaaactgttg ttaaattaca aaaaagaaaa atacttacca aaacaaaccc aacaaacaag 1381 tgaagtgtga ttggaaaaca actaaaacat ttcgttttaa ctttaaacat aactcaacaa 1441 aatgccgaaa attttcctta taaaaaatcg cctgcatcag cagcagcaac gtctattaga 1501 atcacaaaat cttttacaag ataaaaccga tgatgatcgt ctggtaccac cgcttagtcc 1561 ctcacataat cgtgagcgtg atcgttcaac atctccaccg tcatatcatc aagcgcgtct 1621 ccagcccttt gccgaggcga aggattttcc gcgttcacgc aatgcatcac cctcgccttc 1681 gaatatcgcc tccacctctg attccctcaa agctttgcat atacacaatc atcagcagca 1741 gcaacaaaag caaaatctta atttggcccg ctcgcgttct caatcaccca taggtgatgt 1801 cttagattta cacaaaaaat ccccattgtc ctgcaatgtc acatcgaatg tttcaaaatt 1861 gcgtgcaacc gaagactatg agggtgatga ggaggaacaa cctttgagtt tggtatcctc 1921 attaacctat ttgggccgta aacgtttcca tcaatatcat cgtaatctaa ggacttcagc 1981 ggcatcacca acagcgtcct caacgacagt ggcgacaaca gcgccgtctg cgacgactac 2041 gactacaaca actatagcag caacggagat agataaggtt gacagcaata atgctgataa 2101 ggaaaaggaa gagaataatg aagttggtcc tgtcacatct ttatgcgaaa aggatcgctt 2161 gtcacctcca gtaaccacag ctaccaccac tactaccgct gcaagctcaa cggaagcttg 2221 tcattctcgt tcatcatcac ctgccttctc ccccattgtc gacagagtcg ctacctgctc 2281 atcatcttta aaacagctac aagactgccc tgattctttt tccaaagcta taaatccaaa 2341 ggctgaagat caaccacaac aattaaagca atcgctggaa gagctcaacg atagccccaa 2401 atccgcctca ccaaaacatc gttatatttc atcttacaaa aaatctttga ttggcggtgt 2461 cgttctaaca caagcacaac gcaaagaata tccattggaa attgtgcaaa aaatacaaaa 2521 agagaacaca accgtgtttg cgcaacagca gcaacaacta cgaccaatcg atgaaaactc 2581 cgattcggat tccgactcgg atgatggctc aaagttgatt gtagatgaaa aacccttggt 2641 tcccgaagaa caaccattat cgttgagagt gcgatcatct ccgccacctg aagacaagcg 2701 tccatcacca cctccttgtc ctgaaccagc agtaaggtgc agcgttattc aacgtacacc 2761 ttcgaatttg gaagaaaacc aaagaagacg tcgatcgcat gaagtttttt tgcctttggg 2821 taatttagag cacttgggcc ctgaacaaca agaacccatt gattatcacg tgcctcgacg 2881 taggtcaact cttgacaacg acgaggagca gcttttgaat gctaagcgct tggaaaggga 2941 gcgtaaattg agagaagcgc gccgcagaag tgccttattg gctgcccgta ctatattggc 3001 tcaggctaag gttaatccac gttttataag atccttgccg ggaattttgg cggctgctgc 3061 tggacacggt cgtaccacat ctggttcaaa cggaagcaat caaggtcagg gattccaaaa 3121 cggatttggt ggctcgaacg gttcaggttc tcaacagcac tcgagtggtg gtggtggttc 3181 acccacaggt ttcggcggat caggtggtct tagtggcgga gcaggcggcg gcggtatggg 3241 cggaggtcgt gatggtcgag gcaactatgg ccccaattca ccaccatctg gagctttacc 3301 ccctttttat gagtcattga aaagtggcaa taccatgaac ggctcctcga ccaccaattt 3361 caattcatct gcaacttcaa actttttaca acaaaatgct gcagcttatt taatgtccgc 3421 cgctagtaat ggtggtggta gtagtggtgg cggtggtgtt ggtcaacaat acaactcttc 3481 ttcgggaggt gacaatatgg gtggcggcgg tggaatttcg tccgcaccca accttacagg 3541 atcatcttca ttggatcaag caacaccgtc tgcgtctagc atgcttttcg ctaacggtca 3601 tgcatatggc ataattctaa aagatgaacc agatctggag gaatacgagg aaaagattga 3661 tattggagcc tttgcgcaga atatcataca ggcaacaatg gggaattcgg gaaattttaa 3721 tgcttcggcc tttgaagatg ctattatgcc ggatttggct tcagctgcac aaggaccgaa 3781 cggtgcaatg gtggattcat tgcaatttac ggccaattta atattatcct cgcaaacaga 3841 tcatttgctt gaacaactct ccaatgcagt cgatttgagt tcatttttac aacgcaattg 3901 tgtggacgat gaaaactcca catcgccgcg acaagatttt gagctggtct caactccttc 3961 cttgacacca gattcggtgt caattacacc ggtagattgt cataattcat cgacattaca 4021 gttggatact ttccatgaga atttaatgca gcagttaacc aacaacatta cgcggacaca 4081 acaaactgca gccaattacg caccctacga acgtcatcag caacagcaac agcaccaaat 4141 gcaacaacaa catcagcagc aacctcctcc atcttatcaa catgccacaa gagatataat 4201 gcagatgcaa cagcagcatc atcagcatca gcaaaatggc tatcaacaaa accaagccac 4261 gcaaccatta aacagtttac ttaaccaaaa taatctgcta atgcaacaac agcaacagca 4321 ttatcagcag caacaacagc agcacggcaa cagctatcat catatgcaac aacaacaaca 4381 gtcgcagcat tctcatcaac agcatgcatt gtctttgaac caacatcagc tgcagcagca 4441 acaacaacaa catctccccc atcatcatgg gggccatgga catcactctc agcttggcag 4501 caatagcaat ggtcaccacc ctggtcccca tcacctaatg caacaccata gtgacaacag 4561 caatctctca ctgccctcgc caaattcatc ctcagcaata tctaccactg ccaatggtca 4621 tatgatgata ccatcacaaa gtcatcaccc aatgtcatcg gctgccagca acacatcatc 4681 aggttcagct tctgctgctg cacttctaga tacatcgctg ctggacgcta agcccatcat 4741 acaaagtgta agtccaacta attctgctac tagtggtagt tcgcgatatt gttcctcttc 4801 ttgctcttcg tcgtcgtcca ccaactcgtc atataaacaa aaacgctctg taacagttgc 4861 caccgcttcc atggcggcag ctgctgctgt tgctgcttca gcgtcatgtt taacttctcc 4921 cactgttgcc aagttgcacg aaagcaaagt gctacagcaa cggttgggct taccaccaga 4981 agtacaattg gaatttgtca acggcggtca tggcattaaa aatcccttag ccattgaaaa 5041 ttcgcatggc catcatcacc atcgcatacg cagcattgac tgtgtagatg atatgaaaaa 5101 gccactgata tccgatacat ctatgaatgg tagcattggt ggcaacagta atagcagctg 5161 cagcagcagc aatggaaatg gagtcatctc tggcatgaac aataatgaaa acaatgtcca 5221 agaaccatca aatttcgttt gtcgcatatg cttaaaatcc ttcacattga agcgactgtt 5281 gaatcgtcac atgaaatgtc attccgaaat aaaacgttat ttgtgtacat tctgtggtaa 5341 gggtttcaat gatacatttg atttgaaacg acacacgcgt acccatacgg gagttagacc 5401 ctacaagtgt aacttgtgtg agaagagctt tacacaaaga tgttctctgg aatcgcattg 5461 ccttaaagtg catagtatgc agcatcaata tgcctacaaa gaaagaagaa caaagatgta 5521 tgtttgtgag gaatgcggac acaccacttg tgaacccgag gttcattata tacacttaaa 5581 agaaaatcat ccatactcgc cggctttatt aaagttctac gataaacgac atttcaaatt 5641 taacaattca caatttgcca ataatttact gggacaactg cctatgccgg tgcataatta 5701 atagtagtaa gaagcaacat caaaacactt ccatgagata tacaacaaaa tgttaaatca 5761 aagaacaaaa gaaaactatt ctttgtgtct tacaaccaac aaaaccaagt tttccaaaaa 5821 ctgccttaaa aaaatcagag attattttta caagccttaa ataacgtaaa cgcactagct 5881 tattacattt ctcttccctt tgataatgct ttaaactaaa aacatgaaac tttattttgt 5941 ttttcccaat caatcttttt ttatttaatt tttttttttc ttttgctgag caaatcatgt 6001 tgatagcacc aaaacggttg attttgaatt ttatttcata ttactttgag aaagcgaaaa 6061 ataccgtttt ggggtttctt ctttttattt attattttta tttgttagat gtaaagagtt 6121 taaagtcatt tgagagaaac taagatgaaa aatccttaat ttttttaagt tcttcttttt 6181 gtataaatat tttaatattt ttacatttat attttcgata taagtttctt acatttaaat 6241 cctctcaaca aatgctgctt taattttgtg aaaaaaaaaa caaaaccatg ataatgaaac 6301 ttataaagtt ttttcccaaa acacacacgc ataccacact ttatttttta aacattttta 6361 gttaattgat tatgtatttt tgttatgtaa aatgtaaata tttttattat aattatgtaa 6421 cttaacatct ttttgcctcg gttaaggata gttttatgat tttcaaagtt ctgatgagcg 6481 aaacatttta tagaaatgtt tggtgtataa tatccaacac ctccaattct ctcaacaaat 6541 ttcattatta tccccttaat gggtcttttt tgacagactt tgttatattt tatctatcct 6601 tagccgtaac ttgtacaaag tattttcccc caattcttat ctactggtgt atttttaaga 6661 atttatattt atttcttact tgatttcttt tttttaatga atttagtttt acaaccaatt 6721 ttccattttc taatttttta agttgtaagc aaccaaataa gtagaacaca tgttgaaatg 6781 cttatcataa tatgctaaaa aaaaaaacaa aagttagatg taacatcgtg aactgtccat 6841 acattgtgga gctaaggaga agaagtatat atgtcagctg gcaagaaata aaatgaaaac 6901 caaaaccatt gttaaa