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LOCUS XM_013242960 7048 bp mRNA linear INV 02-SEP-2023 (LOC106081175), transcript variant X1, mRNA. ACCESSION XM_013242960 VERSION XM_013242960.2 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Sep 2, 2023 this sequence version replaced XM_013242960.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..7048 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..7048 /gene="LOC106081175" /note="transcriptional regulator ovo; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins" /db_xref="GeneID:106081175" CDS 1442..5833 /gene="LOC106081175" /codon_start=1 /product="transcriptional regulator ovo isoform X1" /protein_id="XP_013098414.2" /db_xref="GeneID:106081175" /translation="MPKIFLIKNRLHQQQQRLLESQNLLQDKTDDDRLVPPLSPSHNR ERDRSTSPPSYHQARLQPFAEAKDFPRSRNASPSPSNIASTSDSLKALHIHNHQQQQQ KQNLNLARSRSQSPIGDVLDLHKKSPLSCNVTSNVSKLRATEDYEGDEEEQPLSLVSS LTYLGRKRFHQYHRNLRTSAASPTASSTTVATTAPSATTTTTTTIAATEIDKVDSNNA DKEKEENNEVGPVTSLCEKDRLSPPVTTATTTTTAASSTEACHSRSSSPAFSPIVDRV ATCSSSLKQLQDCPDSFSKAINPKAEDQPQQLKQSLEELNDSPKSASPKHRYISSYKK SLIGGVVLTQAQRKEYPLEIVQKIQKENTTVFAQQQQQLRPIDENSDSDSDSDDGSKL IVDEKPLVPEEQPLSLRVRSSPPPEDKRPSPPPCPEPAVRCSVIQRTPSNLEENQRRR RSHEVFLPLGNLEHLGPEQQEPIDYHVPRRRSTLDNDEEQLLNAKRLERERKLREARR RSALLAARTILAQAKVNPRFIRSLPGILAAAAGHGRTTSGSNGSNQGQGFQNGFGGSN GSGSQQHSSGGGGSPTGFGGSGGLSGGAGGGGMGGGRDGRGNYGPNSPPSGALPPFYE SLKSGNTMNGSSTTNFNSSATSNFLQQNAAAYLMSAASNGGGSSGGGGVGQQYNSSSG GDNMGGGGGISSAPNLTGSSSLDQATPSASSMLFANGHGNNSLPYSSLANCAKYNQPS SPSSAASPPQPNYPPHLPYGPNPSAYGIILKDEPDLEEYEEKIDIGAFAQNIIQATMG NSGNFNASAFEDAIMPDLASAAQGPNGAMVDSLQFTANLILSSQTDHLLEQLSNAVDL SSFLQRNCVDDENSTSPRQDFELVSTPSLTPDSVSITPVDCHNSSTLQLDTFHENLMQ QLTNNITRTQQTAANYAPYERHQQQQQHQMQQQHQQQPPPSYQHATRDIMQMQQQHHQ HQQNGYQQNQATQPLNSLLNQNNLLMQQQQQHYQQQQQQHGNSYHHMQQQQQSQHSHQ QHALSLNQHQLQQQQQQHLPHHHGGHGHHSQLGSNSNGHHPGPHHLMQHHSDNSNLSL PSPNSSSAISTTANGHMMIPSQSHHPMSSAASNTSSGSASAAALLDTSLLDAKPIIQS VSPTNSATSGSSRYCSSSCSSSSSTNSSYKQKRSVTVATASMAAAAAVAASASCLTSP TVAKLHESKVLQQRLGLPPEVQLEFVNGGHGIKNPLAIENSHGHHHHRIRSIDCVDDM KKPLISDTSMNGSIGGNSNSSCSSSNGNGVISGMNNNENNVQEPSNFVCRICLKSFTL KRLLNRHMKCHSEIKRYLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCNLCEKSFTQRC SLESHCLKVHSMQHQYAYKERRTKMYVCEECGHTTCEPEVHYIHLKENHPYSPALLKF YDKRHFKFNNSQFANNLLGQLPMPVHN" polyA_site 7048 /gene="LOC106081175" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 tagaactcga cgcaatccat ggtgtagggt ttataagatt cagctcggtc gaatttagca 61 ccttttttct tatttaattt caaattttca ttgtcccaaa aacaataaag ccattgaacc 121 actgttcggc ttacgatcag cgtaaataat tacaaagggg gcttggagct accaaccacc 181 atacaggtaa ctgagagcag agagcaagaa gcgtatatgt gatcaccatt gatggccgtt 241 gattttgcgg caaatgtcgg ctctccccat gaactaagtc gtcattcctt ttgaaacgtt 301 actcttggaa acaacgcggc ttacggttgt ttgcactaaa gcagcggtgt ttgtcgtaca 361 taccgcacac aatcaatgtc ggtcgtttaa agtcgaaatg aaacgacgac tccgtacact 421 tttctaagat tcgctcctta gactctagca ggcgaaaata aaaaaaatgt gcacaaagcc 481 gctcttctca cctatacacc tgagaataat tcagacacac acacatatgc acacacaatt 541 ttgctatgaa acgcaacgga actgttaaca agtgaagacg acgacgacga cagcgactat 601 atagtagaaa aaaaaggcag aagaagcaga agaactacta aacaacaaca acaaccatta 661 ctctaagtta aatgtgtatg ccgccgtacc gtgtgcgctg tctgaataga cactagaccc 721 gttgcttgtt tagtaagaga tgaaccgtca tagaggatac acgcgtttat tcttttacca 781 cacatagaaa gagagaaaaa aaaacaaaaa ttgttcaaga agattttaca ccttttggtt 841 gggataaaag aaaactaaca gagaaagaag aaaaatccaa gctaaagcat tcctaagtac 901 acatagagaa tggaaatgtg aaaaatcccc acaaatggaa tacaaagaat attggaaaat 961 ttttctaaag aaaaaattta aaaaacacaa agaatgaaaa tgtttaaaaa attaaacaaa 1021 taacagaatt gtgttggaaa ttaaaaaaaa aaaaagtatt ttaacacaaa tttttgggga 1081 aaaatacaat ttgtaaaaat gtggaagtta aagaaatatc atcaaaatac cagtgacaaa 1141 gtgttttgag tgaaaagtaa aaacaaaaat taattttttg ataataaaac taaaactaaa 1201 tttaaacaat gagaaaaaaa tccaaaatat aaacaaaaat catccaaatt aatacaaaaa 1261 aaaaattgtg ttaacagtta atttagcaat taaacacacc aaggattagt gttaattgct 1321 aaaactgttg ttaaattaca aaaaagaaaa atacttacca aaacaaaccc aacaaacaag 1381 tgaagtgtga ttggaaaaca actaaaacat ttcgttttaa ctttaaacat aactcaacaa 1441 aatgccgaaa attttcctta taaaaaatcg cctgcatcag cagcagcaac gtctattaga 1501 atcacaaaat cttttacaag ataaaaccga tgatgatcgt ctggtaccac cgcttagtcc 1561 ctcacataat cgtgagcgtg atcgttcaac atctccaccg tcatatcatc aagcgcgtct 1621 ccagcccttt gccgaggcga aggattttcc gcgttcacgc aatgcatcac cctcgccttc 1681 gaatatcgcc tccacctctg attccctcaa agctttgcat atacacaatc atcagcagca 1741 gcaacaaaag caaaatctta atttggcccg ctcgcgttct caatcaccca taggtgatgt 1801 cttagattta cacaaaaaat ccccattgtc ctgcaatgtc acatcgaatg tttcaaaatt 1861 gcgtgcaacc gaagactatg agggtgatga ggaggaacaa cctttgagtt tggtatcctc 1921 attaacctat ttgggccgta aacgtttcca tcaatatcat cgtaatctaa ggacttcagc 1981 ggcatcacca acagcgtcct caacgacagt ggcgacaaca gcgccgtctg cgacgactac 2041 gactacaaca actatagcag caacggagat agataaggtt gacagcaata atgctgataa 2101 ggaaaaggaa gagaataatg aagttggtcc tgtcacatct ttatgcgaaa aggatcgctt 2161 gtcacctcca gtaaccacag ctaccaccac tactaccgct gcaagctcaa cggaagcttg 2221 tcattctcgt tcatcatcac ctgccttctc ccccattgtc gacagagtcg ctacctgctc 2281 atcatcttta aaacagctac aagactgccc tgattctttt tccaaagcta taaatccaaa 2341 ggctgaagat caaccacaac aattaaagca atcgctggaa gagctcaacg atagccccaa 2401 atccgcctca ccaaaacatc gttatatttc atcttacaaa aaatctttga ttggcggtgt 2461 cgttctaaca caagcacaac gcaaagaata tccattggaa attgtgcaaa aaatacaaaa 2521 agagaacaca accgtgtttg cgcaacagca gcaacaacta cgaccaatcg atgaaaactc 2581 cgattcggat tccgactcgg atgatggctc aaagttgatt gtagatgaaa aacccttggt 2641 tcccgaagaa caaccattat cgttgagagt gcgatcatct ccgccacctg aagacaagcg 2701 tccatcacca cctccttgtc ctgaaccagc agtaaggtgc agcgttattc aacgtacacc 2761 ttcgaatttg gaagaaaacc aaagaagacg tcgatcgcat gaagtttttt tgcctttggg 2821 taatttagag cacttgggcc ctgaacaaca agaacccatt gattatcacg tgcctcgacg 2881 taggtcaact cttgacaacg acgaggagca gcttttgaat gctaagcgct tggaaaggga 2941 gcgtaaattg agagaagcgc gccgcagaag tgccttattg gctgcccgta ctatattggc 3001 tcaggctaag gttaatccac gttttataag atccttgccg ggaattttgg cggctgctgc 3061 tggacacggt cgtaccacat ctggttcaaa cggaagcaat caaggtcagg gattccaaaa 3121 cggatttggt ggctcgaacg gttcaggttc tcaacagcac tcgagtggtg gtggtggttc 3181 acccacaggt ttcggcggat caggtggtct tagtggcgga gcaggcggcg gcggtatggg 3241 cggaggtcgt gatggtcgag gcaactatgg ccccaattca ccaccatctg gagctttacc 3301 ccctttttat gagtcattga aaagtggcaa taccatgaac ggctcctcga ccaccaattt 3361 caattcatct gcaacttcaa actttttaca acaaaatgct gcagcttatt taatgtccgc 3421 cgctagtaat ggtggtggta gtagtggtgg cggtggtgtt ggtcaacaat acaactcttc 3481 ttcgggaggt gacaatatgg gtggcggcgg tggaatttcg tccgcaccca accttacagg 3541 atcatcttca ttggatcaag caacaccgtc tgcgtctagc atgcttttcg ctaacggtca 3601 tggtaataat tctcttcctt acagttcttt agctaattgc gctaaatata atcaaccttc 3661 ttctccttct tcggctgcct ctccaccgca acctaattac ccaccgcatt taccatacgg 3721 tcccaaccct tcagcatatg gcataattct aaaagatgaa ccagatctgg aggaatacga 3781 ggaaaagatt gatattggag cctttgcgca gaatatcata caggcaacaa tggggaattc 3841 gggaaatttt aatgcttcgg cctttgaaga tgctattatg ccggatttgg cttcagctgc 3901 acaaggaccg aacggtgcaa tggtggattc attgcaattt acggccaatt taatattatc 3961 ctcgcaaaca gatcatttgc ttgaacaact ctccaatgca gtcgatttga gttcattttt 4021 acaacgcaat tgtgtggacg atgaaaactc cacatcgccg cgacaagatt ttgagctggt 4081 ctcaactcct tccttgacac cagattcggt gtcaattaca ccggtagatt gtcataattc 4141 atcgacatta cagttggata ctttccatga gaatttaatg cagcagttaa ccaacaacat 4201 tacgcggaca caacaaactg cagccaatta cgcaccctac gaacgtcatc agcaacagca 4261 acagcaccaa atgcaacaac aacatcagca gcaacctcct ccatcttatc aacatgccac 4321 aagagatata atgcagatgc aacagcagca tcatcagcat cagcaaaatg gctatcaaca 4381 aaaccaagcc acgcaaccat taaacagttt acttaaccaa aataatctgc taatgcaaca 4441 acagcaacag cattatcagc agcaacaaca gcagcacggc aacagctatc atcatatgca 4501 acaacaacaa cagtcgcagc attctcatca acagcatgca ttgtctttga accaacatca 4561 gctgcagcag caacaacaac aacatctccc ccatcatcat gggggccatg gacatcactc 4621 tcagcttggc agcaatagca atggtcacca ccctggtccc catcacctaa tgcaacacca 4681 tagtgacaac agcaatctct cactgccctc gccaaattca tcctcagcaa tatctaccac 4741 tgccaatggt catatgatga taccatcaca aagtcatcac ccaatgtcat cggctgccag 4801 caacacatca tcaggttcag cttctgctgc tgcacttcta gatacatcgc tgctggacgc 4861 taagcccatc atacaaagtg taagtccaac taattctgct actagtggta gttcgcgata 4921 ttgttcctct tcttgctctt cgtcgtcgtc caccaactcg tcatataaac aaaaacgctc 4981 tgtaacagtt gccaccgctt ccatggcggc agctgctgct gttgctgctt cagcgtcatg 5041 tttaacttct cccactgttg ccaagttgca cgaaagcaaa gtgctacagc aacggttggg 5101 cttaccacca gaagtacaat tggaatttgt caacggcggt catggcatta aaaatccctt 5161 agccattgaa aattcgcatg gccatcatca ccatcgcata cgcagcattg actgtgtaga 5221 tgatatgaaa aagccactga tatccgatac atctatgaat ggtagcattg gtggcaacag 5281 taatagcagc tgcagcagca gcaatggaaa tggagtcatc tctggcatga acaataatga 5341 aaacaatgtc caagaaccat caaatttcgt ttgtcgcata tgcttaaaat ccttcacatt 5401 gaagcgactg ttgaatcgtc acatgaaatg tcattccgaa ataaaacgtt atttgtgtac 5461 attctgtggt aagggtttca atgatacatt tgatttgaaa cgacacacgc gtacccatac 5521 gggagttaga ccctacaagt gtaacttgtg tgagaagagc tttacacaaa gatgttctct 5581 ggaatcgcat tgccttaaag tgcatagtat gcagcatcaa tatgcctaca aagaaagaag 5641 aacaaagatg tatgtttgtg aggaatgcgg acacaccact tgtgaacccg aggttcatta 5701 tatacactta aaagaaaatc atccatactc gccggcttta ttaaagttct acgataaacg 5761 acatttcaaa tttaacaatt cacaatttgc caataattta ctgggacaac tgcctatgcc 5821 ggtgcataat taatagtagt aagaagcaac atcaaaacac ttccatgaga tatacaacaa 5881 aatgttaaat caaagaacaa aagaaaacta ttctttgtgt cttacaacca acaaaaccaa 5941 gttttccaaa aactgcctta aaaaaatcag agattatttt tacaagcctt aaataacgta 6001 aacgcactag cttattacat ttctcttccc tttgataatg ctttaaacta aaaacatgaa 6061 actttatttt gtttttccca atcaatcttt ttttatttaa tttttttttt tcttttgctg 6121 agcaaatcat gttgatagca ccaaaacggt tgattttgaa ttttatttca tattactttg 6181 agaaagcgaa aaataccgtt ttggggtttc ttctttttat ttattatttt tatttgttag 6241 atgtaaagag tttaaagtca tttgagagaa actaagatga aaaatcctta atttttttaa 6301 gttcttcttt ttgtataaat attttaatat ttttacattt atattttcga tataagtttc 6361 ttacatttaa atcctctcaa caaatgctgc tttaattttg tgaaaaaaaa aacaaaacca 6421 tgataatgaa acttataaag ttttttccca aaacacacac gcataccaca ctttattttt 6481 taaacatttt tagttaattg attatgtatt tttgttatgt aaaatgtaaa tatttttatt 6541 ataattatgt aacttaacat ctttttgcct cggttaagga tagttttatg attttcaaag 6601 ttctgatgag cgaaacattt tatagaaatg tttggtgtat aatatccaac acctccaatt 6661 ctctcaacaa atttcattat tatcccctta atgggtcttt tttgacagac tttgttatat 6721 tttatctatc cttagccgta acttgtacaa agtattttcc cccaattctt atctactggt 6781 gtatttttaa gaatttatat ttatttctta cttgatttct tttttttaat gaatttagtt 6841 ttacaaccaa ttttccattt tctaattttt taagttgtaa gcaaccaaat aagtagaaca 6901 catgttgaaa tgcttatcat aatatgctaa aaaaaaaaac aaaagttaga tgtaacatcg 6961 tgaactgtcc atacattgtg gagctaagga gaagaagtat atatgtcagc tggcaagaaa 7021 taaaatgaaa accaaaacca ttgttaaa