Unfortunately due to lack of commercial feasibility, the SkyBLAST service has been suspended from December 1st, 2025.
All subscriptions for paid accounts have been paused. For further information or enquiries, please email [email protected]

PREDICTED: Stomoxys calcitrans RNA-binding protein cabeza


LOCUS       XM_013242292            1588 bp    mRNA    linear   INV 02-SEP-2023
            (LOC106080764), mRNA.
ACCESSION   XM_013242292
VERSION     XM_013242292.2
DBLINK      BioProject: PRJNA1009844
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Stomoxys calcitrans (stable fly)
  ORGANISM  Stomoxys calcitrans
            Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
            Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
            Muscomorpha; Muscoidea; Muscidae; Stomoxys.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_081555) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 2, 2023 this sequence version replaced XM_013242292.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_963082655.1-RS_2023_08
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 08/29/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 1% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1588
                     /organism="Stomoxys calcitrans"
                     /mol_type="mRNA"
                     /db_xref="taxon:35570"
                     /chromosome="4"
     gene            1..1588
                     /gene="LOC106080764"
                     /note="RNA-binding protein cabeza; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 3
                     Proteins"
                     /db_xref="GeneID:106080764"
     CDS             1..1260
                     /gene="LOC106080764"
                     /codon_start=1
                     /product="RNA-binding protein cabeza"
                     /protein_id="XP_013097746.2"
                     /db_xref="GeneID:106080764"
                     /translation="MDRYGQGGGGGGGGGYNNFSVPPPNYQMGSESGGGGGPYSKPPP
                     SYNKPGGYDSGNRGGGGGGGGGGGWQDRSGGGGGGYGNGGGSKDNYNKGGGGGGGGYG
                     SGGGGDMVTQEDTIFVSGMNPEATELDIETHFGAIGIIKKDKRTSKPKIWLYRNKETG
                     VSKGEATVTYDDINAAQSAIAWFDGHDFNGFTIKVSLAQRQNNWNKGGGGRGGGGGGG
                     RGRGGGGGGGGFGGGDRDRGGSRFDRGGGGGGGGGGGGSDYDSGRGGGDRGGDRGGRP
                     RMGGPGGGGGGGGNNNVAPREGDWRCSSCNNTNFAWRNECNRCKTPKGDEDGGSGGGG
                     GGGRGGGGYGGGGGGGGGGYNRDSRGGGGGGGYGGGGGGGNRFGGGGRGGGPGGDRGG
                     RRDFGGNSGGGGPMRGNSPSGNRSRPY"
     polyA_site      1588
                     /gene="LOC106080764"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 atggatcgct atggccaagg tggcggtggt ggaggaggag gtggatacaa taatttttca
       61 gtacctccac ctaattacca aatgggttcc gagagcggcg gtggtggtgg accgtatagt
      121 aaacctccac cgtcatacaa caaaccagga ggttatgatt ccggcaatcg tggaggaggt
      181 ggtggtggcg gaggcggtgg tggatggcaa gatcgaagtg gtggtggcgg cggcggctat
      241 ggaaacggag gcggcagcaa ggacaactac aacaaaggtg gcggtggcgg aggcggagga
      301 tatggtagtg gtggcggtgg tgatatggtt acacaggaag ataccatatt tgtttctggc
      361 atgaatcccg aagctaccga attagatatt gagactcact ttggagctat tggcataatt
      421 aagaaagaca aacgtacctc aaagccaaag atatggttgt atcgcaataa ggaaaccggg
      481 gtttccaaag gagaagccac agtgacatat gatgacatta atgctgcgca atcagcaatc
      541 gcttggtttg atggacatga ttttaatggt ttcactatca aggtttcgtt ggctcagcgt
      601 caaaacaatt ggaataaggg aggcggtggg cgaggtggcg gcggcggtgg aggtcgtgga
      661 cgaggaggag gaggtggcgg cggaggtttt ggtggtggcg atcgtgatcg cggtggcagc
      721 cgttttgatc gaggaggagg cggcggcggt ggtggtggcg gtggcggttc agattatgac
      781 tctggccgtg gcggcggtga tcgtggtgga gatcgtgggg gccgtccaag aatgggaggt
      841 ccaggcggtg gcggtggagg cggcggaaat aataacgtag ctccacgcga aggtgattgg
      901 cggtgtagca gttgtaacaa tactaacttt gcgtggcgta atgaatgtaa ccgttgcaaa
      961 acacccaaag gcgacgaaga tggtggcagt ggaggcggcg gcggcggagg tcgtggcggc
     1021 ggtggctacg gtggtggtgg tggcggaggc ggcggcggtt acaacagaga cagccgagga
     1081 ggtggtggag gaggaggtta tggcggcggt ggcggcggcg gtaaccgttt cggcggtgga
     1141 ggtcgcggtg gtggtcccgg aggtgatcgc ggtggacgtc gagattttgg tggcaacagt
     1201 ggcggcggtg gccctatgcg cggcaacagt cccagtggaa atcgctcacg accgtactaa
     1261 taagaattca cagccaaatt ttagtttgga tctaagttat taaaaaaaaa acacacacac
     1321 acacaaaaga aaaatgtgtc gtcatttaac gcaattcttt attctaagat tatttttttt
     1381 tattgtgtct cctttgttct acatgacaat gtaaacaaga aatcctacct taattctttt
     1441 tgacatgtat attacagtgt acattcgttc cgattttacc aagtttatat gtggtgacct
     1501 attacctcct tgaacatgtg acaaaaccta attttttgta taagttatga tcaagaatga
     1561 gtaaataaat atattgtaaa accaaaaa