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LOCUS XM_013242286 7775 bp mRNA linear INV 02-SEP-2023 (LOC106080759), transcript variant X1, mRNA. ACCESSION XM_013242286 VERSION XM_013242286.2 DBLINK BioProject: PRJNA1009844 KEYWORDS RefSeq. SOURCE Stomoxys calcitrans (stable fly) ORGANISM Stomoxys calcitrans Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Muscoidea; Muscidae; Stomoxys. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_081555) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Sep 2, 2023 this sequence version replaced XM_013242286.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963082655.1-RS_2023_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/29/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..7775 /organism="Stomoxys calcitrans" /mol_type="mRNA" /db_xref="taxon:35570" /chromosome="4" gene 1..7775 /gene="LOC106080759" /note="B-box type zinc finger protein ncl-1; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins" /db_xref="GeneID:106080759" CDS 1446..4976 /gene="LOC106080759" /codon_start=1 /product="transcription intermediary factor 1-alpha isoform X1" /protein_id="XP_013097740.2" /db_xref="GeneID:106080759" /translation="MATLEDFAPHILNSTTVTSNTSSATTNIATTADSSSCSFSTVLD SSSITAVAKALEASSFIATPSSASTVDSIVDKLVNSLDLNDTLIANGGCNPIAKDIKS ISSRSSSVAGSLTLGGLGGGNMFSEVFESNVGSELESGSLEDTSGSLCEGDVDKNCKI CSSRLQSPRVLSCLHVFCESCLCKLLNEDSSGGSLSSSSSTSSVGGELIPVSNSCGKS QIKCPVCKQITSVGPKGVKSLTCDYILTNILDLATIESEQLHCTSCKSKENAISRCND CANFLCSGCDNAHKYMRCFENHEVVKLEDLQKTSDGDKPLIIHKPLYCNVHTSENLKY YCFNCQIPVCNDCLIADHKGSEHHYDIIALAEKSVRGDVENLMKEAKSKVQYCDEADA NLSSALTELQTQHDSARDLIQETFENYKKVIEKCRDQALVELKKLHSERVLKIMDLMQ NIQNTMCKIDNTCKFTNRVLEQANAAEFLSMKKLIASQFINMINTTPKCDINYSLTFD TKPDKFEQLAQDTFGKFRTESTPPSPKESTPPPTLPGMPPNMINGRVGGSCSGGSGGA MNCSNSSQSQMASSVTASSPISLPTSMQSSFDGDIYALGNGFMMSNVLTPDSPPQGQS VLPPHHHQLQHQNSTSSHHSSVSGFNGIGSIASGNGNNLNNNMNNTSPAFNGSLGNTP LGSGPNGSLMGNNGLNGLNNSGPPAGMNALNNPLNNSLTAALNGPLGGNAGVAAVPPP GGFNSILEYNLSRLASLTENTPDTLNDPLVGSPSGPTNQSVVPAANAQNQPITLADIL SGDQRAFNNLQALAKLGLNNNDFHTDITSNQLLTNGPSPTGFDCLLPDYCLSTAPSPS LPNLPPLCPGGGAGGSVDDMSIASFHAPQQAQPTTTSIITGRNKATPMQIRCKFGSLG TSKGQFNSPHGFCLGVDEEIIVADTNNHRIEIFDKSGNLKFYFGVPGKEEGQLWYPRK VAVMHTNGKFVVCDRGNERSRMQIFSKSGHFMRKIAIRYIDIVAGLAVTSKGHIVAVD SVSPTVFVISEDGELVRWFDCSDYMREPSDIAIRDNDFYVCDFKGHCVAVFHEDGTFQ YRIGNEKVTCFPNGIDISNAGDILIGDSHGNRFHVACYSRDGVLQSEFECPHVKVSRC CGLKITSEGYVVTLAKNNHHVLVLNTLYVQ" ORIGIN 1 tccatagtct tttctcagag atacgtgtcg attcgaccag ctcgtgtatg aattcatttg 61 aatgcgaaca cgtttgtgaa catgcaaatt tagctttgca acacagcaac actgactgga 121 aggttaactc aaccctgtaa catagtgtag aaaagatact acaaaaattt tttcacacac 181 ggactgagtg attttcgtct gccattaatt tttgtggaaa aatcatataa tggcaaaaag 241 gctctgaaca agcagcagga atacaaagga tatacggttt tgaacactat tgcagcggag 301 atcaatcaat caaccaagag cgggaaatat tttctttcta tcctgaaaac aagttggact 361 ataaagcgga caagaggtag cgttttgtga acattgtaat tcgttacatt tttttgctat 421 tcgtcgtcat aaccgcctca gtgtgcaaca ccctgatata acaacaataa caacaacaac 481 aacaacataa ccgccagtca tcgtcgaacg tttgtgagtt ggccaagtct gcgaattacc 541 taggcctttt gtggtgggat caaaggcaaa ttgtttttgc aagcgaagac gtagtagcat 601 cgttataaca tcatatttgc aatacaacaa taactacaac tatttaaaat aaacatatat 661 atgtacacac ttcacttcaa acttagagag taatttaaag aaaaaacaaa aaaaaaaaca 721 aaaatattgc aaatagtaac aattttacta caaaaacaca acatatttca aatatttcgt 781 gattctttca aacaaccaaa caaaaataca aaggaaaaaa caaatagaaa aaactcaatt 841 ctaaaacacc atttaaaaaa agaaaaacta aaattgcagc aaatagtaat aataatgata 901 atagagaacc aaacccatta aatgatatta atcaacaata tttaaaaaca atcaaaccac 961 aatatttaat gaatatttat caatgaagct ttttacacaa tatttgctct aacgaataaa 1021 gaaaaactaa ctaaagaagt aagcataata acgaaactca attgaaacgc gtaaaaatca 1081 ccaactatag aatcaatcaa tagcgtaaaa cagacataca aaaacaaccc cagtggcttt 1141 tggcgaaaaa ataaccctgc ttcttgaaaa tacatcagag attttgaaat cgcaccaccc 1201 tgcttaattg gtatttttga agagcttgtg tactttttgg tgaacttgta gcaaccacaa 1261 caaaacaacc aatcaaaaat tctccaaggc tttagcacat acgtatatca gatcaaaaag 1321 aaagacaaac tcgcagagta aataaaggct atagaagggg ctcagacctc tcagttgcaa 1381 gcgtttaatc tccaacttca aattcaaaaa gttacactgc gtcacgcgtc atagaggctt 1441 tatatatggc aaccttagag gattttgcac cacatatctt aaatagcacc accgtgacct 1501 caaacacctc gtctgcgacc acaaacattg ccactaccgc cgactcaagt agctgctcct 1561 tttccaccgt cttggactcg tcatcgatca cggctgttgc caaagcattg gaagcttcta 1621 gttttatagc gaccccatct agcgcttcca ctgtggattc aatagttgac aagttggtca 1681 actcgttgga cttgaacgac accttaatag cgaacggcgg ttgtaatccc atagcaaagg 1741 atataaaaag catttcttct cgttcttcgt cggttgccgg cagcttgacc ctaggtgggc 1801 tgggcggtgg caacatgttt agtgaagtgt ttgaaagcaa tgtgggctct gagcttgagt 1861 ctggttcctt ggaagacacg tcgggttcgt tgtgtgaagg cgatgttgat aagaattgca 1921 agatttgcag ttcgcgcctg cagtcgcctc gtgttctatc atgccttcat gtcttttgtg 1981 agtcatgcct ctgtaagtta cttaacgaag attcctcggg aggcagtctt tcttcctcat 2041 cgtccacttc ttcggtgggt ggggaattga ttcccgtttc caattcttgc ggaaaatcgc 2101 agatcaagtg tccagtatgc aagcaaatca cttcggttgg tcctaaaggt gtgaaatctt 2161 tgacatgcga ttacatttta accaacattt tggatttggc caccattgaa tcggagcaat 2221 tgcattgtac ctcttgcaag agcaaggaga atgcaatttc ccgttgcaat gattgtgcca 2281 atttcttgtg cagtggctgc gataatgccc acaagtatat gcgatgcttt gagaatcacg 2341 aagtcgtcaa gttggaagat ttgcaaaaaa cttcggatgg cgataagcca ttgattatcc 2401 ataagccatt gtattgcaat gtgcacacat cagagaatct caagtattat tgttttaatt 2461 gccaaatacc ggtgtgtaat gactgtttga tagctgatca caagggtagt gaacatcact 2521 atgatatcat agcgttggcc gagaaatccg tgcgaggtga cgttgagaat cttatgaagg 2581 aggccaaatc gaaggtgcaa tattgcgacg aagcagacgc aaatttatct agcgctctta 2641 ccgagttaca aactcaacat gattcagcac gcgatctcat ccaagagacc tttgaaaact 2701 acaagaaggt tatagaaaag tgtcgcgatc aagccttggt ggaactaaag aaactgcatt 2761 ctgaaagagt tttgaaaatt atggatttaa tgcaaaatat tcagaacacc atgtgtaaaa 2821 tcgataacac atgcaaattt accaatcgcg tattggagca ggcaaacgca gctgaatttc 2881 tatcaatgaa gaagttgatt gcatctcaat ttattaacat gattaataca acaccgaaat 2941 gtgatattaa ctattcgcta acgtttgata cgaagccgga taagtttgaa caattggccc 3001 aggatacttt tggaaagttc cgcacagaat ctactccgcc atcgccaaaa gaaagtaccc 3061 caccaccaac tttgcctgga atgcctccga atatgattaa cggccgcgtc ggcggttcat 3121 gcagtggcgg aagcggtggt gcaatgaatt gttccaatag ctctcagagt cagatggcca 3181 gctcagtaac ggccagcagc ccaatttctt tgccaacttc catgcaaagt tcctttgatg 3241 gtgacatcta tgctttgggc aatggtttca tgatgtctaa cgtacttacc ccagattctc 3301 ctccgcaagg tcaatctgta ttaccaccac atcaccatca attgcaacat cagaacagca 3361 cttcttccca ccacagcagt gttagtggct ttaatggcat tggttccatc gcatccggca 3421 atggcaacaa cttaaataac aacatgaata atacatcacc tgcattcaat ggatctcttg 3481 gtaacacacc actcggttcg ggcccaaatg gctcactaat gggtaacaac ggccttaacg 3541 gtctcaacaa ctctggaccc ccggcgggca tgaatgcctt gaataatcct cttaataaca 3601 gtcttactgc tgctctgaac ggtcctttgg gcggaaatgc cggcgttgct gctgtaccac 3661 caccaggtgg ctttaatagc attctcgaat acaatttatc tcgtcttgcc agtcttactg 3721 aaaacacacc agacaccctt aatgaccctc tagtaggctc gcccagtgga cccaccaatc 3781 aatcagttgt tccagctgct aatgcacaaa atcagccaat cactctggcc gacattttgt 3841 ccggtgatca aagagctttc aacaatttac aagctcttgc taaattgggg ctaaacaata 3901 atgattttca cacagacatt acaagcaatc agctattaac gaatggaccc tcaccaactg 3961 gatttgattg tttattacca gattactgcc tatccacagc accatcacca agcttgccaa 4021 atttgccacc attgtgccct ggtggtgggg caggtggttc ggttgatgat atgagcatag 4081 ctagtttcca tgccccgcaa caagcgcaac caactacgac gagcattatt acgggccgaa 4141 ataaggcaac accaatgcaa attcgttgca agtttggttc tttaggtaca tcgaagggcc 4201 agttcaattc tccgcatggc ttttgcttgg gcgtcgatga ggaaatcatt gtggccgata 4261 cgaacaatca tcgcattgaa atttttgaca agtcgggtaa tttgaaattt tacttcggag 4321 tacctggtaa ggaagaaggt caattgtggt atccgcgcaa agttgctgtt atgcacacaa 4381 acggcaaatt tgttgtctgt gatcgtggca acgaacgttc acgcatgcag atcttctcaa 4441 aaagtggcca ttttatgcgc aaaattgcca tacgatacat tgatattgtt gctggtctgg 4501 cagttacatc gaaaggacat atcgttgccg ttgacagtgt ttcccctact gtgtttgtta 4561 tatcggaaga tggtgaattg gtgcgttggt tcgattgcag cgattacatg cgcgaaccat 4621 ccgacattgc cattagagac aacgactttt acgtttgtga ctttaagggt cactgcgttg 4681 ccgtctttca cgaggatggc acattccaat atcgtatagg caatgagaag gttacatgct 4741 tccccaatgg aatcgatata tcaaatgctg gagatatatt aatcggagat tcccatggta 4801 atcgcttcca tgttgcttgc tattcgcgtg atggtgttct tcaatcggag tttgaatgtc 4861 cacatgtcaa ggtatcccgt tgctgtggtc ttaaaataac atcggagggt tatgttgtga 4921 cattggccaa gaataaccat catgttttag tgctcaatac actatatgtt cagtgattgc 4981 aaaaaaagaa atctctcaat gcgagacttg atttattacc gtatggaaaa actacaacag 5041 ttagcaaatc tcaccaaaca caccaacaac aacaacaaac gcaatcgcat cttcaacaac 5101 agcagcagca gcagcaccaa caccatcatc atcaatcgtt gcgtgctaca gtttttccag 5161 caatgaatgg cagtcattgt gcaaacactc caataacggt agctgctaca gctgcagcca 5221 attcaatcgg agcaacatca ggcacagccg cagtagtaac accaacagca tcatcatcag 5281 caacagcagc agcagcaagt acatctgtaa acttcaattt gcctttgatt agcaagcatc 5341 agctttataa aactaatact gaaaatagtg ataatggtga acaaacaaaa ttacaactta 5401 tagattatga tgaaatttaa ggcaataata tttttgtatt attttctttg aaaaaacaga 5461 aaaagcaaaa aaaaaaaaaa acatattttt aacatgatga tgataacaac gcctccaaag 5521 atacgacgaa attttgaatt tacgccgcca aaagccaaaa agaaaaaaaa acgtaaaaac 5581 aaaacaattt atttttttta cacctcttct tactacatac tactacttta ttataaatta 5641 ttatattcta catcgtttta cactttacaa tttttaatgt agttaaacaa ttacaaaaaa 5701 agaaggccgt ttttatatac aaaacaaata tttttagctt ttatgaagag attttttttt 5761 ataatttaat ttgtttcttt ccttctgtgt atattactta aaaaaaaaca aacaaacaaa 5821 acaaaaaaga ttttacagta gaatttaaag ttgcatattt ccatatacgc caaaaaaatt 5881 tatgatattt ttcttgtata cggaaaggtt gcccttttag attcgacgat attaattatg 5941 agatggaacg gaacacacac agacacatac acatatacat aattgccaca agacatctga 6001 aagaaagaaa gaaaaaaaaa cacatgttct tttcgaaaca aatctcaagc ccttacaaat 6061 acaattataa tattttgatc tctttctatt caattttttt tatttaatat ccaaacatca 6121 ttattttatt tcatagaaca atttgaaatt ttgagaaaaa ttaaatactt ttttttttct 6181 tttttaaatt tgcctttgta aagaacgaaa acttaaaaca aaatattaaa tattttttat 6241 tttttcaaaa acgctgcaat ggtttacaat aaactgaaca caattcttgc aaaagaataa 6301 tagcaaacaa gaatcaactt aataaatatt gttatttaat ttttttacat ttttttttgt 6361 tacgttttcc ttttttatga taatttaaaa tcaaaagaaa aatgtattta ctttgatgaa 6421 aactatttac atacatacat accgctgttt tcatgaagaa atgtatgtta atttttattt 6481 tagccaacac attatattcc ttttttttaa ttaattaata catacttata aaataataat 6541 ttccccacgt tattttttaa ataaggctgg ttttccaaga cattattttt atttactcac 6601 tcacttgtgt gttatctata tacatataat atatatacat atattttatt tttaattaaa 6661 aataaaaaaa aacattgtta actttttaaa ttattaatta actacacatc tacaaactat 6721 ttacataaaa aaaaacaaac aaaaaacgaa gaaaaaaaaa aaacaaaaat atttaaacat 6781 gttttaataa tgttaaatat tttaacacaa caaaacaaca acaaatttta aacgtgaaac 6841 aaagaaaacc cttataattt ataatacaat accatatata tatatataca taaaatgttt 6901 aattttattt taacttacgt gtttcaaata ttttcttgtc attttgtatt ttttttttta 6961 attttttata tttatttaat ttttgtttca accaagaaaa aatatacata tagatataca 7021 tatatgattt tcaaatgtat ttataaaatt tccttttttc gttttgtaaa cattataata 7081 catttttttt gttctactaa tgctaataaa ttaaaacgaa cgaaaacaaa gaaaattgaa 7141 ctagcttaaa gaaacaaaac aaaacaaaaa aaaaaaaaca tattttgtgc gcgaggctgt 7201 agtttttaat tgatgaaaag caaaagaaga gaaaaaggaa taagaaaaac aaaaacaaaa 7261 cacaaaataa aaatcaatac caatcatacc tttttactac tatataagca ttaacaacga 7321 ttacaagaat tacccaaaag caatcctttt taagaaaaat acatacaaac atggcataca 7381 tatataattt taagtagtac caaatgtagc gtttctcttc gaaattttaa acaacacata 7441 cacacacaca gaaacatcag acttataaaa ttttgaaacc gtcgcgtcgt cattattttc 7501 gtatagacta agattagttt gcttttgtgt tgttataacc tatagttttt atttattata 7561 aaatactttt tattatgtca tatgtaattt tgtctttaac aaaagagcaa agtggttagt 7621 tagtctctct ctctttctca tcaaaaaaaa aaggcaaatt ttcatgtaca tttgtaatgt 7681 ttggctgttc aaagatgtag tgttttttta ttattattat aattatcttt atttttaaac 7741 ttagtcatga attttttagg gatttttatt ttaat