Unfortunately due to lack of commercial feasibility, the SkyBLAST service has been suspended from December 1st, 2025.
All subscriptions for paid accounts have been paused. For further information or enquiries, please email [email protected]

MULTISPECIES: OprD family porin [Pseudomonas].


LOCUS       WP_003121137             417 aa            linear   BCT 01-APR-2023
ACCESSION   WP_003121137
VERSION     WP_003121137.1
KEYWORDS    RefSeq.
SOURCE      Pseudomonas
  ORGANISM  Pseudomonas
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Pseudomonadales; Pseudomonadaceae.
REFERENCE   1  (residues 1 to 417)
  AUTHORS   Pages,J.M., James,C.E. and Winterhalter,M.
  TITLE     The porin and the permeating antibiotic: a selective diffusion
            barrier in Gram-negative bacteria
  JOURNAL   Nat Rev Microbiol 6 (12), 893-903 (2008)
   PUBMED   18997824
COMMENT     REFSEQ: This record represents a single, non-redundant, protein
            sequence which may be annotated on many different RefSeq genomes
            from the same, or different, species.
            
            ##Evidence-For-Name-Assignment-START##
            Evidence Category  :: Conserved Domain (CDD)
            Evidence Accession :: Domain architecture ID 10507924
            Evidence Source    :: NCBI SPARCLE
            ##Evidence-For-Name-Assignment-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..417
                     /organism="Pseudomonas"
                     /db_xref="taxon:286"
     Protein         1..417
                     /product="OprD family porin"
                     /GO_component="GO:0009279 - cell outer membrane [Evidence
                     IEA]"
                     /GO_component="GO:0019867 - outer membrane [Evidence IEA]"
                     /GO_component="GO:0046930 - pore complex [Evidence IEA]"
                     /GO_function="GO:0015288 - porin activity [Evidence IEA]"
                     /GO_process="GO:0006811 - monoatomic ion transport
                     [Evidence IEA]"
                     /GO_process="GO:0015802 - basic amino acid transport
                     [Evidence IEA]"
                     /calculated_mol_wt=45647
     Region          30..416
                     /region_name="OprD"
                     /note="outer membrane porin, OprD family; pfam03573"
                     /db_xref="CDD:460978"
ORIGIN      
        1 mkirrktavp rnagavlpml aclaaqaaeg gfledaktdl vlrnyyfnrd frdhdagksl
       61 vdewaqgfil kfssgytpgt vgvgldaigl fgvklnsgrg tsnsellplh ddgraadnyg
      121 rvgvaaklrv saselkigem lpdipllryd dgrllpqtfr gfavvsrelp glalqagrfd
      181 avslrnsadm qdlsawsapt qksdgfnyag aeyrfnrert qlglwhgqle dvyrqsyanl
      241 lhkqrvgdwt lganlglfvd rddgaarage idshtvyglf sagiglhtfy lglqkvggds
      301 gwqsvygssg rsmgndmfng nftnadersw qvrydydfvg lgwpgligmv ryghgsnatt
      361 kagsggkewe rdvelgytvq sgplarlnvr lnhasnrrsf nsdfdqtrlv vsyplsw