Unfortunately due to lack of commercial feasibility, the SkyBLAST service has been suspended from December 1st, 2025.
All subscriptions for paid accounts have been paused. For further information or enquiries, please email [email protected]

MULTISPECIES: diaminopimelate epimerase [Pseudomonas].


LOCUS       WP_003114344             276 aa            linear   BCT 20-NOV-2023
ACCESSION   WP_003114344
VERSION     WP_003114344.1
KEYWORDS    RefSeq.
SOURCE      Pseudomonas
  ORGANISM  Pseudomonas
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Pseudomonadales; Pseudomonadaceae.
REFERENCE   1  (residues 1 to 276)
  AUTHORS   Hor,L., Dobson,R.C., Downton,M.T., Wagner,J., Hutton,C.A. and
            Perugini,M.A.
  TITLE     Dimerization of bacterial diaminopimelate epimerase is essential
            for catalysis
  JOURNAL   J Biol Chem 288 (13), 9238-9248 (2013)
   PUBMED   23426375
REFERENCE   2  (residues 1 to 276)
  AUTHORS   Usha,V., Dover,L.G., Roper,D.L. and Besra,G.S.
  TITLE     Characterization of Mycobacterium tuberculosis diaminopimelic acid
            epimerase: paired cysteine residues are crucial for racemization
  JOURNAL   FEMS Microbiol Lett 280 (1), 57-63 (2008)
   PUBMED   18269631
REFERENCE   3  (residues 1 to 276)
  AUTHORS   Koo,C.W. and Blanchard,J.S.
  TITLE     Chemical mechanism of Haemophilus influenzae diaminopimelate
            epimerase
  JOURNAL   Biochemistry 38 (14), 4416-4422 (1999)
   PUBMED   10194362
COMMENT     REFSEQ: This record represents a single, non-redundant, protein
            sequence which may be annotated on many different RefSeq genomes
            from the same, or different, species.
            
            ##Evidence-For-Name-Assignment-START##
            Evidence Category  :: HMM
            Evidence Accession :: TIGR00652.1
            Evidence Source    :: JCVI
            ##Evidence-For-Name-Assignment-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..276
                     /organism="Pseudomonas"
                     /db_xref="taxon:286"
     gene            1..276
                     /gene="dapF"
     Protein         1..276
                     /product="diaminopimelate epimerase"
                     /EC_number="5.1.1.7"
                     /GO_function="GO:0008837 - diaminopimelate epimerase
                     activity [Evidence IEA]"
                     /GO_process="GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /calculated_mol_wt=30189
     Region          1..276
                     /region_name="DapF"
                     /note="Diaminopimelate epimerase [Amino acid transport and
                     metabolism]; COG0253"
                     /db_xref="CDD:440023"
ORIGIN      
        1 mllrftkmhg lgndfmvldl vsqhahvqpk hvklwgdrnt gigfdqlliv eapsspdvdf
       61 ryrifnadgs eveqcgngar cfarfvqdkr ltvkksirve tkggiielni rpdgqvtvdm
      121 gpprlapaei pfqaereals yeievngqrv elaavsmgnp hgvlrvenvd sapvhslgpq
      181 levhprfpkk anigflqvld phharlrvwe rgvgetqacg tgacaaavag irqgwlqspv
      241 qidlpggrlh iewagpgqpv mmtgpavrvy egqvrl