Unfortunately due to lack of commercial feasibility, the SkyBLAST service has been suspended from December 1st, 2025.
All subscriptions for paid accounts have been paused. For further information or enquiries, please email [email protected]
LOCUS WP_003102417 450 aa linear BCT 20-NOV-2023 [Pseudomonas]. ACCESSION WP_003102417 VERSION WP_003102417.1 KEYWORDS RefSeq. SOURCE Pseudomonas ORGANISM Pseudomonas Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae. REFERENCE 1 (residues 1 to 450) AUTHORS Hur,S., Stroud,R.M. and Finer-Moore,J. TITLE Substrate recognition by RNA 5-methyluridine methyltransferases and pseudouridine synthases: a structural perspective JOURNAL J. Biol. Chem. 281 (51), 38969-38973 (2006) PUBMED 17085441 REFERENCE 2 (residues 1 to 450) AUTHORS Lee,T.T., Agarwalla,S. and Stroud,R.M. TITLE A unique RNA Fold in the RumA-RNA-cofactor ternary complex contributes to substrate selectivity and enzymatic function JOURNAL Cell 120 (5), 599-611 (2005) PUBMED 15766524 REFERENCE 3 (residues 1 to 450) AUTHORS Agarwalla,S., Stroud,R.M. and Gaffney,B.J. TITLE Redox reactions of the iron-sulfur cluster in a ribosomal RNA methyltransferase, RumA: optical and EPR studies JOURNAL J. Biol. Chem. 279 (33), 34123-34129 (2004) PUBMED 15181002 REFERENCE 4 (residues 1 to 450) AUTHORS Lee,T.T., Agarwalla,S. and Stroud,R.M. TITLE Crystal structure of RumA, an iron-sulfur cluster containing E. coli ribosomal RNA 5-methyluridine methyltransferase JOURNAL Structure 12 (3), 397-407 (2004) PUBMED 15016356 REFERENCE 5 (residues 1 to 450) AUTHORS Madsen,C.T., Mengel-Jorgensen,J., Kirpekar,F. and Douthwaite,S. TITLE Identifying the methyltransferases for m(5)U747 and m(5)U1939 in 23S rRNA using MALDI mass spectrometry JOURNAL Nucleic Acids Res. 31 (16), 4738-4746 (2003) PUBMED 12907714 REFERENCE 6 (residues 1 to 450) AUTHORS Agarwalla,S., Kealey,J.T., Santi,D.V. and Stroud,R.M. TITLE Characterization of the 23 S ribosomal RNA m5U1939 methyltransferase from Escherichia coli JOURNAL J. Biol. Chem. 277 (11), 8835-8840 (2002) PUBMED 11779873 COMMENT REFSEQ: This record represents a single, non-redundant, protein sequence which may be annotated on many different RefSeq genomes from the same, or different, species. ##Evidence-For-Name-Assignment-START## Evidence Category :: HMM Evidence Accession :: NF009639.0 Evidence Source :: NCBI Protein Cluster (PRK) Source Identifier :: PRK13168 ##Evidence-For-Name-Assignment-END## COMPLETENESS: full length. FEATURES Location/Qualifiers source 1..450 /organism="Pseudomonas" /db_xref="taxon:286" gene 1..450 /gene="rlmD" Protein 1..450 /product="23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD" /EC_number="2.1.1.190" /GO_function="GO:0008173 - RNA methyltransferase activity [Evidence IEA]" /GO_process="GO:0006396 - RNA processing [Evidence IEA]" /calculated_mol_wt=48940 Region 7..450 /region_name="rumA" /note="23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD; PRK13168" /db_xref="CDD:237291" ORIGIN 1 marnkgglrf qpsggargpa ipvgkkqrlt ierlahdgrg iaheagmtwf vsgglpgeel 61 earvlgarsk vvdarserlf sssdlrrrep ctvagrcggc tlqhlehgeq lalkqrtlqe 121 qlqrfagiep eewaaplvgp efgyrrrari avrwdararr ldvgfrasas qeivafdecl 181 vlvpplqtia ralpallqdf rkpesighve lfhgtasall lrhttalvde drqrlaafcs 241 ahqaqlwlqg aeqplpvepa aelgyslgdw qltlayrpgd fvqvnapvne smirqaldwl 301 aptadervld lfcglgnfsl plarrvarvv gvegvaamve raganalang lgnahffqad 361 lskalaeapw aeqgftavll dpprdgafea vremsslgar rvvyvscnpa tlardagema 421 rqgyrlkrag ildmfpqtah veamalfeag