Unfortunately due to lack of commercial feasibility, the SkyBLAST service has been suspended from December 1st, 2025.
All subscriptions for paid accounts have been paused. For further information or enquiries, please email [email protected]

MULTISPECIES: OprD family porin [Pseudomonas].


LOCUS       WP_003099122             425 aa            linear   BCT 20-NOV-2023
ACCESSION   WP_003099122
VERSION     WP_003099122.1
KEYWORDS    RefSeq.
SOURCE      Pseudomonas
  ORGANISM  Pseudomonas
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Pseudomonadales; Pseudomonadaceae.
REFERENCE   1  (residues 1 to 425)
  AUTHORS   Pages,J.M., James,C.E. and Winterhalter,M.
  TITLE     The porin and the permeating antibiotic: a selective diffusion
            barrier in Gram-negative bacteria
  JOURNAL   Nat Rev Microbiol 6 (12), 893-903 (2008)
   PUBMED   18997824
COMMENT     REFSEQ: This record represents a single, non-redundant, protein
            sequence which may be annotated on many different RefSeq genomes
            from the same, or different, species.
            
            ##Evidence-For-Name-Assignment-START##
            Evidence Category  :: Conserved Domain (CDD)
            Evidence Accession :: Domain architecture ID 10507924
            Evidence Source    :: NCBI SPARCLE
            ##Evidence-For-Name-Assignment-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..425
                     /organism="Pseudomonas"
                     /db_xref="taxon:286"
     Protein         1..425
                     /product="OprD family porin"
                     /GO_component="GO:0009279 - cell outer membrane [Evidence
                     IEA]"
                     /GO_component="GO:0019867 - outer membrane [Evidence IEA]"
                     /GO_component="GO:0046930 - pore complex [Evidence IEA]"
                     /GO_function="GO:0015288 - porin activity [Evidence IEA]"
                     /GO_process="GO:0006811 - monoatomic ion transport
                     [Evidence IEA]"
                     /GO_process="GO:0015802 - basic amino acid transport
                     [Evidence IEA]"
                     /calculated_mol_wt=46720
     Region          28..423
                     /region_name="OprD"
                     /note="outer membrane porin, OprD family; pfam03573"
                     /db_xref="CDD:460978"
ORIGIN      
        1 mlkkriclla lgiatasqam andqeaakgf vedshldlff rngyisrdyk hgrqdkaewg
       61 qaatatftsg ftqgtvgvgv dafglyavrl dggkgrsgaa gidffkqgds gsaaddlskg
      121 gaavkfrisn tvlkygdqmp slpvlsydns rllpesysgt litskeiegl elnagrftae
      181 srksaegrds gglksinvfg gkyaftdhfn aslyasdved vlkkqyinln ytiplqadqs
      241 lnfdfngyrt kldsdfadqn fngnrdnkiw slaasytida htfmiahqrn tgdtgynygw
      301 yqnaggigdg gttiwlansy wsdfnaeder swqvsyaldf akygvpglty rvayvrgdni
      361 ktaetsngke reifnqvqyv vqsgpakdlt lrlrssflrv sndarsyndd gneirafvey
      421 pfsvf