MULTISPECIES: RNA chaperone Hfq [Vibrio].

LOCUS       WP_001051872              87 aa            linear   BCT 06-AUG-2024
ACCESSION   WP_001051872
VERSION     WP_001051872.1
KEYWORDS    RefSeq.
SOURCE      Vibrio
  ORGANISM  Vibrio
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Vibrionales; Vibrionaceae.
REFERENCE   1  (residues 1 to 87)
  AUTHORS   Kakoschke,T., Kakoschke,S., Magistro,G., Schubert,S., Borath,M.,
            Heesemann,J. and Rossier,O.
  TITLE     The RNA chaperone Hfq impacts growth, metabolism and production of
            virulence factors in Yersinia enterocolitica
  JOURNAL   PLoS One 9 (1), e86113 (2014)
   PUBMED   24454955
  REMARK    Publication Status: Online-Only
REFERENCE   2  (residues 1 to 87)
  AUTHORS   Su,Z., Nakano,M., Koga,T., Lian,X., Hamamoto,A., Shimohata,T.,
            Harada,Y., Mawatari,K., Harada,N., Akutagawa,M., Nakaya,Y. and
            Takahashi,A.
  TITLE     Hfq regulates anti-oxidative ability in Vibrio parahaemolyticus
  JOURNAL   J Gen Appl Microbiol 56 (3), 181-186 (2010)
   PUBMED   20647674
REFERENCE   3  (residues 1 to 87)
  AUTHORS   Nikulin,A., Stolboushkina,E., Perederina,A., Vassilieva,I.,
            Blaesi,U., Moll,I., Kachalova,G., Yokoyama,S., Vassylyev,D.,
            Garber,M. and Nikonov,S.
  TITLE     Structure of Pseudomonas aeruginosa Hfq protein
  JOURNAL   Acta Crystallogr D Biol Crystallogr 61 (Pt 2), 141-146 (2005)
   PUBMED   15681864
COMMENT     REFSEQ: This record represents a single, non-redundant, protein
            sequence which may be annotated on many different RefSeq genomes
            from the same, or different, species.
            
            ##Evidence-For-Name-Assignment-START##
            Evidence Category  :: HMM
            Evidence Accession :: NF001602.0
            Evidence Source    :: NCBI Protein Cluster (PRK)
            Source Identifier  :: PRK00395
            ##Evidence-For-Name-Assignment-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..87
                     /organism="Vibrio"
                     /db_xref="taxon:662"
     gene            1..87
                     /gene="hfq"
     Protein         1..87
                     /product="RNA chaperone Hfq"
                     /GO_function="GO:0003723 - RNA binding [Evidence IEA]"
                     /GO_process="GO:0006355 - regulation of transcription,
                     DNA-templated [Evidence IEA]"
                     /calculated_mol_wt=9638
     Region          1..78
                     /region_name="hfq"
                     /note="RNA-binding protein Hfq; Provisional; PRK00395"
                     /db_xref="CDD:179001"
     Site            order(6..8,11,26..30,38..40,42..43,50..64)
                     /site_type="other"
                     /note="hexamer interface [polypeptide binding]"
                     /db_xref="CDD:212463"
     Site            order(22..28,30..47)
                     /site_type="other"
                     /note="Sm1 motif"
                     /db_xref="CDD:212463"
     Site            order(25,29..33,46,52,60..61,63)
                     /site_type="other"
                     /note="RNA binding site [nucleotide binding]"
                     /db_xref="CDD:212463"
     Site            51..62
                     /site_type="other"
                     /note="Sm2 motif"
                     /db_xref="CDD:212463"
ORIGIN      
        1 makgqslqdp flnalrreri pvsiylvngi klqgqiesfd qfvillkntv nqmvykhais
       61 tvvparpvsh hsgdrpasdr paeksee