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LOCUS NR_123892 3425 bp RNA linear INV 26-DEC-2023 (lncRNA:CR45018), lncRNA. ACCESSION NR_123892 VERSION NR_123892.1 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3425) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3425) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3425) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3425) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3425) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3425) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3425) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3425) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3425) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3425) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3425) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3425) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3425) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3425) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3425) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3425) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3425) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3425) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3425) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3425) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 3425) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 3425) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 3425) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3425 /organism="Drosophila melanogaster" /mol_type="transcribed RNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3425 /gene="lncRNA:CR45018" /locus_tag="Dmel_CR45018" /gene_synonym="CR45018; Dmel\CR45018" /note="long non-coding RNA:CR45018" /map="11E9-11E9" /db_xref="FLYBASE:FBgn0266376" /db_xref="GeneID:19835567" ncRNA 1..3425 /ncRNA_class="lncRNA" /gene="lncRNA:CR45018" /locus_tag="Dmel_CR45018" /gene_synonym="CR45018; Dmel\CR45018" /product="long non-coding RNA:CR45018" /note="lncRNA:CR45018-RB; Dmel\lncRNA:CR45018-RB; CR45018-RB; Dmel\CR45018-RB" /db_xref="FLYBASE:FBtr0344174" /db_xref="GeneID:19835567" /db_xref="FLYBASE:FBgn0266376" ORIGIN 1 gcagaaagcg atttcagttc ggcgacggca gcgcacaggt gccattcgga aagtgcggac 61 gtagaatgtt tgccgggaat tccagtggca ttttcaccta tagttccact cgattttgcc 121 tcgacgccag cgttagtagc gcgtttcgac ggaacacaca gatcgttttc caacaccata 181 agcaccattt cacttttgag tctttcctta tcagtcactc ccaatcacta cccaaccatc 241 atccactact cttcactagt ttctctttct actatccttt ttcttattat tcccatcctc 301 ccttttaact atcttcacac actcattctt aacggaaatc ttcactgttt ttatgctttc 361 tactatcgtt ctatccgcca gcctttcact tttcactcgc ttctaacatt taccattcta 421 gctatttttt taccatctct taccattgaa ttctttatat aagccttagt aaattagtat 481 acagaaaata gtacgaattt ccattttcca ttttctgcac ttttttcaac ttcttctgct 541 tacaacatct ttcttatcac caatcccatt acactttctt gcatattcct atttcatttt 601 tgctgttcta acgaatctca cacttacttc attagtccca actctttgct aacctggtgt 661 atacatacct ttacccaccc cacctctacc cgcgatccag ccaatccatc catgtgagat 721 gagtgcgtgc gacggcggta cgggaacggt ttcgcgaacg tctgacgccc ccgctttcca 781 attcgatgtc atgccaaaga taacgacgtc gacgtcgacg tcgaaagcgt cggcagcgag 841 ggcgaaaacg aaaacgacag caaaagcaac aacaattgga aaaacaacaa cgacgacaac 901 gcggagaacg gttaaaattg aaaataaatg gacgacggca gaggcaacgg cgttcagtta 961 tcagcggaca gcggagcaga ttggagctag tgcccgagcc agagccagaa ccaaagtagc 1021 agctacagtc agagctagag caaacccaat tgcggccaca tccaatcagc gaagtgacat 1081 tggttatcca tgtgaggtgg catccatctc cgagttggcc ctacgcaagg cgcagttgaa 1141 agcgcaattt ttcggcaatc aagtgggtgg attagcccgc gatagcgaga caagcagcac 1201 cactagaatc actcgcacca ccaactaccg cagtgcttat cccagctgca agacggaacg 1261 aggcaagccg gtgcaacagc taatcgatca gttccaggcc atgattgtcc agcagcagca 1321 gcagcagcag ctgagcaacg agggcgagcc caagacactg cccggagcca ctgcatccaa 1381 ttcggatgag ggctgtaatg tcaccggcgg cggactgagt ccctatagca gcgacaacga 1441 ggataacagc ctatcgccga ggcagcgcaa aatgaaggtc acacgctgtg ccagtagtga 1501 ttccgccctg ggtctggacg tggacgatgg cggcatggat gtgccgttgc cgccacaacg 1561 tcggatgaca ctgaccgtaa cggatttacc cctgcgaccg gccctactgc cactggccga 1621 acccacagcc ctgccagatt cgccactgac atcgcccacc ggcggtggca atccgagcgt 1681 gggtgtgccc accaaggtgc tgctcgagga gcgagtggta gccgcaccgg gatcgcgacg 1741 tgaatccacc cagagctcgt acagcgaact gggcgtcagt ggactgccgc tgggcgtgcg 1801 ctatgtgcgc acaccatccg tcgtggttag cgactattcg gatgacataa ccgcctgcgg 1861 cattagcatg gaggaaatgg aatactttcg tctgcagcgg gcgcgtggtc agcggcgttg 1921 ttccctggag gcgggacatc acagtcatag cggtggacat ggcgcacatg gacacggtgg 1981 atcgggagcg gcgggaatgt cgccgggatg tggcaaggac gatggccaat cggatgtcag 2041 tgcagcaagc agttgcagca atctctacta ttgtggatcc accatttctg ccctcgatgg 2101 tggcgagtgc atcgtgaatg gagttcgagt tgcgctcgcc aggaagagca gcacccagag 2161 cagcagtctc agcgacgagg aggaggagga ggaggatgac gacgaggatc gcgatgagca 2221 ggatcgcgat gaggatgatc gcgatgcgga ggagatgctt caggaggatt acgagcgggg 2281 ggatcgcgaa cgtgagaggg agcggcagat cagcgaacta atggccgcca cgcagcttgg 2341 tgatcgtcag cgggatcgat ccaagaaggt aggcgcccgc gatgacgtca caaaccaggg 2401 aaatctcaaa ctagactaaa gaattcgggt tggcaaaacg gacaagtaac aaagtggagc 2461 agcctagtaa atttaatatt aaacactatt tttttttttt cgtttttaaa tatcattaat 2521 gattgtttgt gttgttgtta tcgaaagcat aaaagagcag tgaatgaggg caggtctgaa 2581 tggcagcgaa agagataagc aagttggtgc atatacacag ggagaaacgg gtgctacgcg 2641 tagatgaaat gtggcataat taaaaaaaaa aaaaaacaat ctattttgct ctagagcagt 2701 attataccgt ttagtttatc aactgcaaga ccattataac tatagaaaaa gactataata 2761 ataagacttt tacaatacgc atatctatta aatataaaaa gaaaaaaaaa aacaaagaaa 2821 atcccttgaa ctactgactt gataatgcga attaccacta agtttcatct tgttttaaag 2881 atgatgagat gatatatagg ctcaagaacg gtaatcccgc gccttatcag ctaatggttt 2941 ttccaccttg catatgcagg tcttttcttt cagtgtatgc gtttgcttaa aaggctatta 3001 attaattaga attttatctt atcactaaaa tgaggttctg ttactcggag aagtcttttt 3061 gtattcttcg cttttcgttc gctataataa ttatcgtttt tttttttttt tttttttttt 3121 ttttgagtga atgagaacga tatgatggtg gtgatgttga aaaatagggg gttccttgat 3181 aaaaaaaaaa aacaagtata tatctacgaa aatacgaaaa cctcggatcc gttggtttaa 3241 ttcgtttttt ttttcgtatc tagaactgca aaacaaaaca acggcagcga tagcgaggaa 3301 aagagcttat cttagttaac tgtatactgt attatagata aatattatgt acatatataa 3361 gccagcacat atttacgttt atataatggc atcttttttt ttttgtggtt tattattcct 3421 tttgt