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LOCUS NR_123891 3637 bp RNA linear INV 26-DEC-2023 (lncRNA:CR45018), lncRNA. ACCESSION NR_123891 VERSION NR_123891.1 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3637) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3637) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3637) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3637) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3637) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3637) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3637) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3637) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3637) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3637) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3637) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3637) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3637) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3637) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3637) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3637) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3637) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3637) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3637) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3637) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 3637) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 3637) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 3637) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3637 /organism="Drosophila melanogaster" /mol_type="transcribed RNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3637 /gene="lncRNA:CR45018" /locus_tag="Dmel_CR45018" /gene_synonym="CR45018; Dmel\CR45018" /note="long non-coding RNA:CR45018" /map="11E9-11E9" /db_xref="FLYBASE:FBgn0266376" /db_xref="GeneID:19835567" ncRNA 1..3637 /ncRNA_class="lncRNA" /gene="lncRNA:CR45018" /locus_tag="Dmel_CR45018" /gene_synonym="CR45018; Dmel\CR45018" /product="long non-coding RNA:CR45018" /note="lncRNA:CR45018-RC; Dmel\lncRNA:CR45018-RC; CR45018-RC; Dmel\CR45018-RC" /db_xref="FLYBASE:FBtr0346132" /db_xref="GeneID:19835567" /db_xref="FLYBASE:FBgn0266376" ORIGIN 1 gtcagtctgt cactgtgtgt gctggtgtgc gtgcgcctct ctgtgtgttc gcgcgtgtgt 61 gtgtgtgtgc gacgtatctg tgcccgctca gtgctctgtg ctcaaatgca atttacaatt 121 acgcgcggca attggagcag ctaccgttgt gtgcgtgcgt acgtgcggga tcattgcaca 181 ttgcgtcaac gtttcaagat cacaattaca attaccccga cgcagtggca gttgcagtag 241 caccaaaaaa tccatctcaa ttgcgagaga accgaacagt ggcaaaagca accgaaaatt 301 aagtaaggca cagcaaattt gtcgaagaaa actatcaaca atacaagtaa ataagaacgg 361 cagaacggcc gcccgccccc acaacagctg ctctccgttg atgcgccact ccactccgcg 421 gctcaacgat tcttctatac aattcttcga gcctcctccc ctcgcccatt ctcgccccac 481 gagactcccc tccccccgcc ccccacgctg ctcttctcga ttcttttcgc ccctcccgcc 541 ggcccgctgg aaaaaacggg cagagctgca gagccgcaga aagcgatttc agttcggcga 601 cggcagcgca caggtgccat tcggaaagtg cggacgtaga atgtttgccg ggaattccag 661 tggcattttc acctatagtt ccactcgatt ttgcctcgac gccagcgtta gtagcgcgtt 721 tcgacggaac acacagatcg ttttccaaca ccataagcac catttcactt ttgagtcttt 781 ccttatcagt cactcccaat cactacccaa ccatcatcca ctactcttca ctagtttctc 841 tttctactat cctttttctt attattccca tcctcccttt taactatctt cacacactca 901 ttcttaacgg aaatcttcac tgtttttatg ctttctacta tcgttctatc cgccagcctt 961 tcacttttca ctcgcttcta acatttacca ttctagctat ttttttacca tctcttacca 1021 ttgaattctt tatataagcc ttagtaaatt agtatacaga aaatagtacg aatttccatt 1081 ttccattttc tgcacttttt tcaacttctt ctgcttacaa catctttctt atcaccaatc 1141 ccattacact ttcttgcata ttcctatttc atttttgctg ttctaacgaa tctcacactt 1201 acttcattag tcccaactct ttgctaacct ggtgtataca tacctttacc caccccacct 1261 ctacccgcga tccagccaat ccatccatgt gagatgagtg cgtgcgacgg cggtacggga 1321 acggtttcgc gaacgtctga cgcccccgct ttccaattcg atgtcatgcc aaagataacg 1381 acgtcgacgt cgacgtcgaa agcgtcggca gcgagggcga aaacgaaaac gacagcaaaa 1441 gcaacaacaa ttggaaaaac aacaacgacg acaacgcgga gaacggttaa aattgaaaat 1501 aaatggacga cggcagaggc aacggcgttc agttatcagc ggacagcgga gcagattgga 1561 gctagtgccc gagccagagc cagaaccaaa gtagcagcta cagtcagagc tagagcaaac 1621 ccaattgcgg ccacatccaa tcagcgaagt gacattggtt atccatgtga ggtggcatcc 1681 atctccgagt tggccctacg caaggcgcag ttgaaagcgc aatttttcgg caatcaagtg 1741 ggtggattag cccgcgatag cgagacaagc agcaccacta gaatcactcg caccaccaac 1801 taccgcagtg cttatcccag ctgcaagacg gaacgaggca agccggtgca acagctaatc 1861 gatcagttcc aggccatgat tgtccagcag cagcagcagc agcagctgag caacgagggc 1921 gagcccaaga cactgcccgg agccactgca tccaattcgg atgagggctg taatgtcacc 1981 ggcggcggac tgagtcccta tagcagcgac aacgaggata acagcctatc gccgaggcag 2041 cgcaaaatga aggtcacacg ctgtgccagt agtgattccg ccctgggtct ggacgtggac 2101 gatggcggca tggatgtgcc gttgccgcca caacgtcgga tgacactgac cgtaacggat 2161 ttacccctgc gaccggccct actgccactg gccgaaccca cagccctgcc agattcgcca 2221 ctgacatcgc ccaccggcgg tggcaatccg agcgtgggtg tgcccaccaa ggtgctgctc 2281 gaggagcgag tggtagccgc accgggatcg cgacgtgaat ccacccagag ctcgtacagc 2341 gaactgggcg tcagtggact gccgctgggc gtgcgctatg tgcgcacacc atccgtcgtg 2401 gttagcgact attcggatga cataaccgcc tgcggcatta gcatggagga aatggaatac 2461 tttcgtctgc agcgggcgcg tggtcagcgg cgttgttccc tggaggcggg acatcacagt 2521 catagcggtg gacatggcgc acatggacac ggtggatcgg gagcggcggg aatgtcgccg 2581 ggatgtggca aggacgatgg ccaatcggat gtcagtgcag caagcagttg cagcaatctc 2641 tactattgtg gatccaccat ttctgccctc gatggtggcg agtgcatcgt gaatggagtt 2701 cgagttgcgc tcgccaggaa gagcagcacc cagagcagca gtctcagcga cgaggaggag 2761 gaggaggagg atgacgacga ggatcgcgat gagcaggatc gcgatgagga tgatcgcgat 2821 gcggaggaga tgcttcagga ggattacgag cggggggatc gcgaacgtga gagggagcgg 2881 cagatcagcg aactaatggc cgccacgcag cttggtgatc gtcagcggga tcgatccaag 2941 aaggtaggcg cccgcgatga cgtcacaaac cagggaaatc tcaaactaga ctaaagaatt 3001 cgggttggca aaacggacaa gtaacaaagt ggagcagcct agtaaattta atattaaaca 3061 ctattttttt tttttcgttt ttaaatatca ttaatgattg tttgtgttgt tgttatcgaa 3121 agcataaaag agcagtgaat gagggcaggt ctgaatggca gcgaaagaga taagcaagtt 3181 ggtgcatata cacagggaga aacgggtgct acgcgtagat gaaatgtggc ataattaaaa 3241 aaaaaaaaaa acaatctatt ttgctctaga gcagtattat accgtttagt ttatcaactg 3301 caagaccatt ataactatag aaaaagacta taataataag acttttacaa tacgcatatc 3361 tattaaatat aaaaagaaaa aaaaaaacaa agaaaatccc ttgaactact gacttgataa 3421 tgcgaattac cactaagttt catcttgttt taaagatgat gagatgatat ataggctcaa 3481 gaacggtaat cccgcgcctt atcagctaat ggtttttcca ccttgcatat gcaggtcttt 3541 tctttcagtg tatgcgtttg cttaaaaggc tattaattaa ttagaatttt atcttatcac 3601 taaaatgagg ttctgttact cggagaagtc tttttgt