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LOCUS NR_123849 3248 bp RNA linear INV 26-DEC-2023 antisense_RNA. ACCESSION NR_123849 VERSION NR_123849.2 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3248) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3248) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3248) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3248) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3248) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3248) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3248) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3248) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3248) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3248) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3248) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3248) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3248) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3248) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3248) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3248) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3248) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3248) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3248) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3248) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 3248) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 3248) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 3248) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Oct 19, 2015 this sequence version replaced NR_123849.1. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3248 /organism="Drosophila melanogaster" /mol_type="transcribed RNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3248 /gene="asRNA:CR45185" /locus_tag="Dmel_CR45185" /old_locus_tag="Dmel_CR45219" /gene_synonym="CR45185; CR45219; Dmel\CR45185" /note="antisense RNA:CR45185" /map="9A4-9A5" /db_xref="FLYBASE:FBgn0267495" /db_xref="GeneID:19835300" ncRNA 1..3248 /ncRNA_class="antisense_RNA" /gene="asRNA:CR45185" /locus_tag="Dmel_CR45185" /old_locus_tag="Dmel_CR45219" /gene_synonym="CR45185; CR45219; Dmel\CR45185" /product="antisense RNA:CR45185" /note="asRNA:CR45185-RA; Dmel\asRNA:CR45185-RA; CR45185-RA; Dmel\CR45185-RA" /db_xref="FLYBASE:FBtr0345084" /db_xref="GeneID:19835300" /db_xref="FLYBASE:FBgn0267495" ORIGIN 1 cgcagtcggc tgtatttgga ggtcgtcggt ggttctgctg ctggctgctg cgtggtggtt 61 tcaaccgctg ccgacgtcgg cgagttgata atccgccggc ggacactcaa caccggtcgc 121 cgcgaaacgc tgccagtcgt tggttgtcgc agctgccagt cggtagtcaa aagtggttcg 181 ttcgcggtac atggaattat attgaaaaca aacactgaat ttagcatttt gtgtatttta 241 agatacatat taaacgtttt tttgcaactc gctgttttgg tgtttcgtat ttttgttttc 301 gtgccttttc cggcggtgtg cagtcaacaa caattcaaaa gcgcgctaca tgctataaac 361 aataataata atcatattga aaatattaaa gtattggtta agcataagaa atctactaaa 421 gccttaaata aattagtact gtttggcgct tgttgtgtat tgtgttttac tgtgggcatt 481 tgggcattgg gcagtgggaa gttgggcttt tcgaattgaa aggaatggaa aggaaaggaa 541 acccttcgaa aggtgctttc tctcgccatc tcggcaagat caagttgacc gctaagtggg 601 ccaacaaccg caaaaatgca gtcaggcatt ttaattgaag gacgttcgag tgcaaaataa 661 ataacacgca ggcataacaa gttatttgcc tggctattag tttgcgctag ttttgctttg 721 tccaccaatc tcgttgacat tgaaagcaat acagagcaca gcgtagagtg gaaattgctg 781 taattatgcc aaattgaact ttataaatgt aatggaaaac aaccagtaaa catatagaat 841 aagctaaact gatatataga ctatgctacg aattaaaacc cttcagtaat acccttgaaa 901 atatttaaaa ctatatttaa aaaattattt ccaacctaga ccctacaaaa aaagaaaaaa 961 aagcgagaga gagttgctgg cgagaacatt tttggtgtca atgtcgcaga caccttcgag 1021 ataatgaatg ggccggaaaa atacgcatca gccacggtgc ttgcataatg ctgatgggct 1081 tcttcgatta gcagattcgc aaattgaagc ctgcattgct gcttggtatc ttcggacttt 1141 ggcaatgcga ttcgaccgca tgccaatgtg attgcataat ctgaatcccc aacattccca 1201 cttgttttta tttttttttc tctggcagat gcgcagtttg ctggtttttt tggtatccac 1261 aaactggttg ggcttttgat taaatattgt gcaagagagt tggtcagctc gaagactgat 1321 gatgcgtgct gggcgtcgtc cgctgatttg ctggcttctc aatgggttta ttgtgaaagt 1381 ggcgaaacga aagactcaag acacgaacgc gacggggaaa gcactggccg agaaaagggt 1441 gccgctgttc aagggcaaat tgaataaaag aagagaaggg ttgccattca tagctagttg 1501 aaaaaccttt aaaaatacta agtactggcc tttaaaaata ttgcccaaat tttaaaattc 1561 gaaaaaaaat atatatataa caatgtaatg ccatatgcac ctaatctgtt tataaaattt 1621 gagtttgttt gaagtggcat tacatttcca cacctatatg atatcattgg acccgtttcg 1681 ttaacctctt tgtctgtgca aacactccct attatttatt ttttgtacgt actcttcaac 1741 aaaatgatga tgacaaaagc ctgttaccct gagtgcaaca cctttgatct tcttttatgg 1801 tttcttttta ttgtctgcgc ttttgtttgc tttgtccaac ttggcttttt attattttta 1861 aatgggattt ttcatttcac gggcactttg aaagaggaaa aatcaccgag cccacttcac 1921 acacaaaaaa caaaaaaaaa aaaaaactgt tgaaaaaatc gtttacgact ttttgtcaac 1981 gtgatttttt ggtgtcgcct gtcagttcgt cgcgtttgtt atgcggcgcg tgatttgact 2041 tttggcaatt atcgttccga ggagactagc aagcgattat gaaacatgtc tcgtctgcag 2101 agttcctctc tctgtctttc tttttttttc agcaatttgc aaattgtttt agctgaactc 2161 gtttttattt tctgcctttt tatttcaatt tttttttttt gctcgcacat cttgcggact 2221 catcgaaagt tgaaaccgat tatccagaca ggcttgcata cagacacagt gcatgtgcac 2281 ttatgaatag gcatgaggca atagccgctt catacaaaac aactagatag agccaggctg 2341 acatttaaca aaggcaaaaa aagaaatata aaaaacagat gaaaaagaag ctcgggctaa 2401 tgactaagca cataacgagc aattctacaa gtgacatttg aaagagcatc gaaaggcgga 2461 tggagagggg caaataaatg catttataat tgccttggac atgctgaaga atttttccat 2521 tcgacaatca tttgctgtaa cctttgcatt tcaagcaaaa ttagttttgt aaataatcaa 2581 gtcatgaaat atgttcacga tctaagaaac aatcaggaac tgcctgggaa tggcaatata 2641 ataaagaaat taaactatac caaagacttt ctaaccaaat ctgcgaatat gaaacttgta 2701 aatgtactga aaacaagaaa atatatgttt ataaaataaa tgttacacga attatataca 2761 agagttttcc aatttgaaaa cctacatgta ttatatatac atttgcgggg tgttaaggtg 2821 gggggaagtt gtttgtgttc tgttgtggca ataataattt gtatagttcg tttctttttg 2881 ttcattattt tattgttgtg cataaatatt ttacaactaa agctagactt aaagtatttt 2941 cggatagaga gggaaagagt gaaaaaaatt attcggaagg agatagaagt aaaagagaac 3001 tgcgcctggt aaaagccatt taaagttatt tcaaatcgat taagtttgta tccactgagg 3061 gtcgttgcgt ttctagataa ctatgtatct ataattttct agaatatctg tatttgaacc 3121 aaggaaagac ttctctcgca tctgcatgtg tgaacaaatg tgtgtgagtg tggatgtgaa 3181 tgtgtgggtg ttgttgtttt gggtatggca gctcgaagaa tacgaattgt ttaaataatt 3241 tacacagc