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LOCUS NR_123821 4733 bp RNA linear INV 26-DEC-2023 (lncRNA:CR45533), lncRNA. ACCESSION NR_123821 VERSION NR_123821.1 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 4733) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 4733) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 4733) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 4733) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 4733) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 4733) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 4733) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 4733) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 4733) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 4733) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 4733) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 4733) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 4733) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 4733) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 4733) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 4733) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 4733) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 4733) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 4733) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 4733) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 4733) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 4733) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 4733) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4733 /organism="Drosophila melanogaster" /mol_type="transcribed RNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..4733 /gene="lncRNA:CR45533" /locus_tag="Dmel_CR45533" /gene_synonym="CR45533; Dmel\CR45533" /note="long non-coding RNA:CR45533" /map="7B2-7B2" /db_xref="FLYBASE:FBgn0267089" /db_xref="GeneID:19835128" ncRNA 1..4733 /ncRNA_class="lncRNA" /gene="lncRNA:CR45533" /locus_tag="Dmel_CR45533" /gene_synonym="CR45533; Dmel\CR45533" /product="long non-coding RNA:CR45533" /note="lncRNA:CR45533-RA; Dmel\lncRNA:CR45533-RA; CR45533-RA; Dmel\CR45533-RA" /db_xref="FLYBASE:FBtr0346104" /db_xref="GeneID:19835128" /db_xref="FLYBASE:FBgn0267089" ORIGIN 1 ccagaccacc gaaacaactc ttgaactctg gccgggatct ttgttttgtc aactattgaa 61 taaattataa ttacggcact gctagaatga caatggctga tagaaaaagg aagtttttaa 121 ataatttaaa tttaagcaat aatacagcat gtattttaac aacttacttc tcgaaaatct 181 ttaaaaatgt gctcagaaaa gttttctttg tgataacaaa cctctaagat cacccataat 241 atctcctttc acattcgccc aaaattgccc gactccaagt tcattagaaa cccgtcagcg 301 ggagattggc acacatatgg acacagtgga caatggccaa attgcactcc ttttgtgttc 361 agcaatggat gggatggact agggattcaa gtgctggtcg agaagggata gtagaagttg 421 gatggcgaaa gtggtcgaaa agtacgcggg caccaaatga tggcaacatc atttgtcaaa 481 acaaactttt tgacatggcc gcgcatcgca gcgaaagtgc gtggccttcc gcccaccgac 541 cgacgcccaa cttccagcgc tttcacccat tctcacccac tttcacccac ttgtgtgcgt 601 gtgacaaacc caaatagcca ctcgattgtt cccgactgac cggaccgatg tttatcatta 661 ttattgccac tcgtggacca aaatcacagg ctcatcctct cttgactcta tcactgttag 721 atagcaatgc atatctcttg gtatctcgtt taaggtttat ttcaaacaga tattagtcca 781 gattattata attttctttt gcacttgcct gctgtgaaac cctaaaagtg agctttcaaa 841 tttggctcga cggccaaata gttcatagtt ctgcttctca ctaaattaat gaaaaacagc 901 taagattagc ttcagttttt ttgtttttgt aaattcccaa aaatttgttt agttacttac 961 ttattttatt ttataaaaaa tttaaatcag attttgcagt gcctgcataa aggggttcaa 1021 agggggttgg ctgtccactt gtacaaatta ttgtgaaata cacaagaagc gtagcggaag 1081 gagaaatata agagaagcca tagcatactt taccaaaaaa tgaagtcatc gagcaggaga 1141 tgtttttgcc acaaagagtg tgaagagcag gggagaagag gatgtgcgtc ctgaatgtgt 1201 atgtgtgtta gtgagtgtat gctgcatgga acccttaatt aaataaattc aatatgcgca 1261 acgggcagtc aaaagccacc caaaaaagag tccctgctcg ggcgccaccc caccccaaac 1321 gctccatccg acaggcaaac tgaaaaccca aatatcgtcc ggggccaact acaaaattat 1381 atggcgaaaa tgttcgttgg aaatcgtcat ggattttaat atttaaaagc gttttcaaaa 1441 attgtcccct ttcgtgacga accgggttag agaatggtat ggaaggagga tgactgagaa 1501 aagggttgga tatgtaggtg gcaaccggtc tggacatttg ctgaccaaca gggtcccagt 1561 tcagagggca aacgcatcga ctttctctga ctcccctgct caccatcgtg ctaatatcgc 1621 cgtcctgctt ggttgtgtcc caaaagtcga cccagaccta aaaaaaggaa cccaaacccg 1681 ttcgacaggc agcggcaaca ttttgataag cgccgcatgg acagtcgcct gggcatcccc 1741 aaaccactgc cccaaccacc cgaaaaccac ccactgacca accaaccaac caaccaacca 1801 ggcaaggaaa taaaaaagta acagcctcac ccaggacact cactcacact tacacagcac 1861 acactctctc gttcgtcgcc aaaaaggata ttatttaatg agctacactt aaagcattgg 1921 acatggaggg cttcagaact tatcgtgggt gtggggactt aaaaggacgc tgaccaaatc 1981 gagttgacct gttcgagaat gagtgtgcac tgaaaattta tattgaatta atcaattaaa 2041 caattaatat atctaaaata cttatatcct tatattccat caaatgttaa aactaatatc 2101 aacagaagct gaacagaaat cgtattaaag tgtaagtgta tggcatttga aaaaccaaaa 2161 gcaaaggtaa acaacctatg tactttcttt ttgtttggat aaaattttag tttttttttt 2221 cgcagtgaaa ctttatggtt gaatatttgg tagtttggtg catagttttc gagactcagc 2281 cgcttggctt gcatattgaa ttggaggctt tggtcctgtt ttggagtcca actccgtgcg 2341 attgtcctgc cagtgagctt tggggtcagg cgtgtgcgtg attaaaaatt caataccgaa 2401 acgaatgtgg aattgaacgg taaattaaat gagccaaaaa ggaaggggat aattgtggca 2461 gagagtatat tccaaaaagg atagtacatt tggaacaaat tgaattctta tagaaacggg 2521 agccagttaa aacatatgat taattaataa ttaattaatt aataatttac atttaatgta 2581 gaacatatta actaaatttt taaatgaaat catactaaaa tcctaaatgt ttcaagagtt 2641 tgcacctatt cagagtcttg aaagggaaaa tactaataaa atcccgctac tagagtcctc 2701 gagcatcttg agccggctaa aagccccaac tccagtccat ccaaggagca gaaggtgctg 2761 tggtacgtgg cccataaggg ctgagacagg ttcttatcgt tatgcccacc ttggctgtgc 2821 catcattctg ctccggcgtg gaatgtttac ataaattcat aaaattattg ctataatcaa 2881 cattatgcat ttggaaacaa acaaaaaacc agaaaccgca aaagagtttt ccacccacaa 2941 gggttggaaa gtgtaccgtg tactgtactg ttttggatgt atgcagcctc gtaattatgc 3001 tcgcttgatt tgccagcaac attttctttt taattattta tatttgggga tttttaggca 3061 gtcggcagtc aggcaaaacg attcaaaggc cttccaagtt ttccactcgc ctcgtatgtt 3121 agggatggta tttgcataca tctgactgcc tggcctgact gactgactga ctgactgaca 3181 atatcttttt atgctttggc aggcagcaac ccctccgaag caccccgcac catctccatt 3241 ggttcgcttt tttgggcatg tgttttatta ggcatgttaa ttaaaagaca tgaaatgaaa 3301 ataattaaaa atatgtataa aaacacatac acacacacac actcattcat acgcatctgc 3361 atatgtgtgc tttatataca gcaaacactt agatgcataa acgcttttat agagaatata 3421 tagtatctat gggcacataa gatatggctg tcgaacaggt ttcattactc ttcggctcag 3481 attgccattg aaaatgtggt tactgaattc aaaagggtat atggggctgt ctatatatga 3541 taagataaat caaaaattaa acaacacttt ataaaactat aaattgtatg agcattggta 3601 ttactataaa tttagttaca gagaaacttt attaagtcaa tgttttgaaa taaaggggtg 3661 tgcacttttt aaaaataaac cggtttctgt tttatattta tgcatcccta atataatttt 3721 gctacatata gcagggtatc cttcactttt ataatttcat atgtggccat gtgtaaatta 3781 ccttgaggaa aataatgagg aaacatggac ccctaaataa attatcaaca gaaaaaagtg 3841 tttgatttgc aaaagggtta cagcgatagg aaggggagaa gaagctcatc cttggaggcc 3901 tatcaatttt cttgcccact tttccaccag atcgccttat taactcattg ctgtggtgtc 3961 aatttacacg acaacggcac aaaacgaacg caagacaaag gctaaaatat ggcaacatta 4021 ctttccacca accaaccaac caaccatcta accaatcccc caaccaaacc acacttcgct 4081 cctttgtctc aaatttcgag gctatggaaa aatggccccc caatccaaca attcccaatt 4141 gccggcgtct taagtgttgc taataacgcc tacaactaaa aacagaaaac agctgcaggg 4201 tcaaaagggt ggcgagaggt gggttccaaa aactgggcaa aagtgggtgc catggttgag 4261 cgacactttt aagaaattgc aaagttttcg taacaaaggc aacttgaaca atactttgat 4321 gcgattttgc ggatattagg tgttaatttt tcaaagagcc aacgacattg tacgccatca 4381 gaaactcaca cccttagaac cgtttttaga acccccattc tcatccacat cccccatccc 4441 ccatccccca tcctcgttcc cattttatta gcccccactt atttttcggt ggcctggttg 4501 ccattgccat ggcactctgc cttttgtaat tttaactgct tttggttaac acttttacgc 4561 attgccaact gtggtggcac cacctacctc ccactccgca tcgatatcac atggcagcac 4621 caccatctta aaccctttgt cttcctgcca gcaagtcatc gatgggaaaa ctttgggcaa 4681 ctttttctca gctcactttt ttgtgtattt taattgcccc caatgggggg att