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LOCUS NR_073632 3785 bp RNA linear INV 26-DEC-2023 (lncRNA:roX1), lncRNA. ACCESSION NR_073632 VERSION NR_073632.1 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3785) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3785) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3785) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3785) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3785) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3785) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3785) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3785) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3785) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3785) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3785) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3785) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3785) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3785) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3785) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3785) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3785) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3785) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3785) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3785) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 3785) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 3785) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 3785) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3785 /organism="Drosophila melanogaster" /mol_type="transcribed RNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3785 /gene="lncRNA:roX1" /locus_tag="Dmel_CR32777" /gene_synonym="BcDNA:GH10432; chrX:3706836..3706970; CR32777; Dmel\CR32777; EG:EG0002.2; FBgn0019661; lncRNA-roX1; roX; rox-1; rox1; roX1; RoX1" /note="long non-coding RNA on the X 1; alternate names: RNA on the X1; RNAonX; yang; RNA on the X 1; RNA on the X chromosome 1" /map="3F3-3F3" /db_xref="FLYBASE:FBgn0019661" /db_xref="GeneID:3772376" ncRNA 1..3785 /ncRNA_class="lncRNA" /gene="lncRNA:roX1" /locus_tag="Dmel_CR32777" /gene_synonym="BcDNA:GH10432; chrX:3706836..3706970; CR32777; Dmel\CR32777; EG:EG0002.2; FBgn0019661; lncRNA-roX1; roX; rox-1; rox1; roX1; RoX1" /product="long non-coding RNA on the X 1" /note="lncRNA:roX1-RD; Dmel\lncRNA:roX1-RD; CR32777-RD; Dmel\CR32777-RD" /db_xref="FLYBASE:FBtr0337067" /db_xref="GeneID:3772376" /db_xref="FLYBASE:FBgn0019661" ORIGIN 1 gatcatcagt ctttggcggc atggctaagt ggaaacttct cgtaagaaac tcttcccgga 61 ggagtgtgga atttttgtta tatttttttt aaagtgcatt tttttttaaa ggtgaaatta 121 gctagagtgt gtactgctac tgatagggtg acctaacgca acagcaacga gatgtgctcc 181 atcgggcagt gataacttct tggcaacccc aaccttaaaa attcgacttc aattcaatac 241 atgtgaccag ataaacacag cttcaagcgc attactcgct ccatagattc attaaacctt 301 aatgaacaca agaaacactc aaaaagtaag agattcttcg cctgagctgc aattcttaag 361 ggtggcgtct tcgaggcatc gaagacgcgg ctatccgaag tagcgaaagt ggtgcgagtg 421 gtgcaacttg tgacactgcc agcggagtgg atgagcccca tataaactga accttgcaga 481 cctacaaaga ccctatggcc cataaagccg gacagggttt tcctgtccga aaagtaatgt 541 aacgaaaacg cttgagatgg aaaattctgg ccggaacgaa agagacaaat gaacccaaag 601 cgtccgcttg tcgccacttg cgtttcgaga agacgcgtac gcatacctct atcggatgca 661 tgtggcggta cgcggatgcg agcgagacaa tgatactgta gacaaggaga gacggctccc 721 tctctccatc actctctatc gggctggcca ggcgtttgca tcgcaagcgg gtgagtgaga 781 cggccatagg gcggactgca agtcccgaaa gagagcggta aagccatata acccctataa 841 gcaataaacg acgcatcgaa agttgcgtat aacggcatgg gcatccctcg gaaaggaaaa 901 agttcagacc gcactcacga ataccgctcc gctctggaaa gaccggccaa atctgtaaga 961 aatgctcggc caggagcgta gaatcgccat aatgcagtaa acgactgcaa aagcagctat 1021 aactcaaaca gaagttgaca aaagcaagag ctatgcgctc tattaaagtc acaataagtg 1081 tcatcgtaac gttcaccact tttcacattt catcaaagtc catttctggt ccgtgcaaag 1141 cagtaatgta gagattcttt ttcatttgaa attgttagtt atcactgccc taggaactca 1201 tcaatttttg tgatagtagt gactgaagta tttgttttga gggaattaga agccagaaga 1261 tttaggagcc atgccgccgc ttaagtaaga tctaaaagcc aagaagctac acccagaaga 1321 aactgccact gcatagattt ttgaaatgag caaagaaatc taaactgaaa tggttatcca 1381 ccaactgaag gccatcgaat ctattaagtt ttatccacgt tagcactgtt caaaatctca 1441 agctaggcta ctaaacgaac tattcatcac aaaagcctca cacaaaatat tcattcatga 1501 atcagtctag cctatttttt cttctgcttt accatttgaa caagtactca gaaatcgctc 1561 gaaaagggac attttgattt tgctttgatt ttgtgcctta gtttttcaac taaccaaaat 1621 attgcttaca gaaattaatc agtttattaa ctgaaaaagc ccttaaatta actgccagga 1681 ggtgagtttt tgtcttcgat tcttggaaaa cgttgagtag gggcccaact aaaggaaata 1741 ggccagacaa agcctgtaaa aaaaacctat aaaaataaaa agttctaaaa gaggccactg 1801 tgaaactgtt atacaagctg gcctaaagtt atgcgtagaa gaaaacgtat aaaagtgaat 1861 aaatgtttgc aaacggatgt ttaaaacatg cgttttctaa acgaaagatg aaaaataata 1921 tcaaaaagcg aattaagtgc tgttcaatcg tttgaccagc agttgatttg cgaatggctg 1981 aaaatattcg cttaaactta tggcaaagct tgttaaaata aaaaataaaa aattttaaaa 2041 gaaataaaaa tatccttaca ccgggcacct acaatgcgta tccacccggg attcaagcaa 2101 aagctattat tctattggcc ttgattatta acatatttct atgctgtgtg ttctttcaga 2161 tgagttttga acagagacga aacttggagc ctcgcggagc caaagtttta aattgatttt 2221 tgtttttaat tccctatatt cgagtcgatt tcccgcagtc ttttcattaa ttttcttaaa 2281 cattgactgg ctaattcttg aacctcagtt ttcattcaaa agtcatcttt tcttcgttgg 2341 tccctgcttg agcttgaaac attgtgccaa gaattttttt ctgttcaatt gaaccttttc 2401 tgtgcaaatg tcctgcagaa gaggaaaccc attacagact tgtgctttct cctgaatgtg 2461 atatgcaagc aggtgtaaca aagcctatga aatccggtcc aaccccacat caggccatag 2521 ccaagaagct ccgcctaata caagagaaga ttatactaac cagtttgcta tctttcagat 2581 ccgaccagaa gtagatcgtg ttctgtgaac taaccccttc agtgttcagc acctcgtcaa 2641 ttgttcttaa ttgttccttt tattttatgt tgtgttttat ctaattaact tccgttgtat 2701 tttacccagt ccccttcctt gactttctaa taattttcca tgttttgaca gatccttttt 2761 tgtcccaccc gaataaccaa ccatactatt cttatataag gttcgtgttt cggaaaacgc 2821 attaaaaggc gtaattttaa atcgttttcc gaaatgggaa tcacatttaa acaatatttt 2881 gaactgcgta aaacgaataa atggaacggt attgaaagcc tatgcattca ttacggttca 2941 agaagtataa ctaaaaaaaa ggaatgaaaa aaaaagaaaa gaaaaacaca tttactaaca 3001 aataaaaact tgctgatcaa cgttctacgc agttcttaaa aagatgttga aatgaacaca 3061 gccaaagcaa gtaaaaatgt gtggaaacgt tatacgaatc ttcaccaagt gcccaaacta 3121 taaaaagaaa attgaaatcg ttatacgcct gagccgattc acaaagaaac aaaatatgtt 3181 tatactgcgg agcacaataa agcgaatgtt atgtggattt ctttgggaat cggcatggga 3241 ttcaacgtga agctagaaaa tttttgaact gctaaattaa acgaaacttg aatgatgtta 3301 aaaatggtct ttattatggt tgggaaaatg tgctttcggc taattttaaa tagttgcagc 3361 aacaaacatg gaaatccata attctcttta aaaaaacgca cgaaattgac cagcaggaat 3421 cggctggcaa acgacctgag caatactcgc ccaccaaaga ggcttgacag aagacaaccg 3481 agggacctca ttctccgctc ataaaacact gatgccatta ttatatacag ttcgatagga 3541 aattttgtta cgaattcaac gaggtatggc atttcccttt tggtcaacta ttttttatgc 3601 tattgagaaa atactgattc tttttaacca aaaataaaca aaataagaat tgccaaaaat 3661 ttgatattta caaacggggt tatctctata aggtggccaa aaaagatatt accgcttaaa 3721 tgaagactgt tttatactgc caataaacat acctaactat ccctatcact atttttataa 3781 atatc