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LOCUS NP_727634 3601 aa linear INV 26-DEC-2023 ACCESSION NP_727634 VERSION NP_727634.2 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 DBSOURCE REFSEQ: accession NM_167334.2 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (residues 1 to 3601) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (residues 1 to 3601) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (residues 1 to 3601) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (residues 1 to 3601) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (residues 1 to 3601) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (residues 1 to 3601) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (residues 1 to 3601) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (residues 1 to 3601) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (residues 1 to 3601) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (residues 1 to 3601) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (residues 1 to 3601) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (residues 1 to 3601) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (residues 1 to 3601) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (residues 1 to 3601) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (residues 1 to 3601) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (residues 1 to 3601) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (residues 1 to 3601) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (residues 1 to 3601) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (residues 1 to 3601) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (residues 1 to 3601) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (residues 1 to 3601) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (residues 1 to 3601) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (residues 1 to 3601) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. The reference sequence is identical to AAN09315. On Jan 16, 2013 this sequence version replaced NP_727634.1. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## Method: conceptual translation. FEATURES Location/Qualifiers source 1..3601 /organism="Drosophila melanogaster" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" Protein 1..3601 /product="smrter, isoform F" /name="CG4013 gene product from transcript CG4013-RF" /note="CG4013-PF; Smr-PF; smarter; smrter; SMRT-related ecdysone receptor interacting factor; SMRT-related ecdysone receptor-interacting factor; SANT domain protein; silencing mediator of retinoid and thyroid hormone receptors-related ecdysone receptor-interacting factor; lethal (1) G0060" /calculated_mol_wt=378961 Region 702..>770 /region_name="GPS2_interact" /note="G-protein pathway suppressor 2-interacting domain; pfam15784" /db_xref="CDD:464868" Region <719..1014 /region_name="TPH" /note="Trichohyalin-plectin-homology domain; pfam13868" /db_xref="CDD:464007" Region 1003..1042 /region_name="Myb_DNA-binding" /note="Myb-like DNA-binding domain; pfam00249" /db_xref="CDD:459731" Region <2181..>2317 /region_name="Atrophin-1" /note="Atrophin-1 family; pfam03154" /db_xref="CDD:460830" CDS 1..3601 /gene="Smr" /locus_tag="Dmel_CG4013" /gene_synonym="anon-WO0153538.73; CG12719; CG4013; Dmel\CG4013; E52; l(1)G0060; l(1)G0361; lincRNA.983; smr; SMR; SMRTER" /coded_by="NM_167334.2:594..11399" /db_xref="FLYBASE:FBpp0305908" /db_xref="GeneID:32225" /db_xref="FLYBASE:FBgn0265523" ORIGIN 1 meaairstsv qvgappptnn nnsssssssn snnnntsnnn nnssnsgnnn tpngaqqqqq 61 qhhqqqqqhh qqqrvvassn qqqqqqqlqq qqqqqqqqqq qqqqqqhdng ptshhlhqss 121 isisnqqnka tqqqqqqqqq qhqkqqqqqa ssmsayqqrl psnaasihra leqqqqyakq 181 aahlqqqqqh qshqqqqqqq qqdqrtnlhl qihhhhqqqq qqqqqqqqqq qqqqqqqqqk 241 qqqhhmqqqq qqqplspphp pgsssnsssa aaaaaaaaaa aaavnpgypp ssaaaaavns 301 gypprppqhr fiqntgysia paptyrdnpy srhtqiqqqq qqqqqqqqqq qqqqqqqqqa 361 aasmpeyqra aaraavaavs agkgnvsgqs snssssssgg gggggsaggs appgggvvqv 421 sqsggvlvme amphyasqpn snpsqqqqqq hqqqqggnps gagatsgagg ggggsggsvm 481 vgslgrilmp hpqalqytse yltnataava aamvnqrqhl qlqqqqqqqh ppepfggqqp 541 ykkqrlsean annmnhlpph pqqqhqqqqq qqqqhqahqq qhqrsspaqv qqqqqqqmns 601 srqshndmcr qvvttpmgmq lkvetlpqqq qkqqqhqqqq qqqqqqgrsq pvvssmstvv 661 sqpvgtvtvt taglsashsg ssgnvaaglg tgntgsaste ayhpqveais ptlpsdssie 721 ergrtsaked llmqiqkvdn eiksaettme tlrkkekslm eeaalakeqr aakelndnnn 781 dqepmvelsw rsqmlaekiy aanrktaqaq hsmlqnaaad esspgsvagr pwlplynqpl 841 dvealamlir qhqsqirapl llhirklkae rwahnqglve kytkdqadwq rrcermeasa 901 krkareaknr effekvftel rkqredkerf nrvgsrikse adleeimdgl qeqaledkkm 961 rsyavipplm hdarqrrcay hnengliedm vavhqqrkal nmwtageket fkekylqhpk 1021 nfgaiaasld rkspqdcvry yylskkteny kqllrksrqr trssrnpaka qaaqpqciid 1081 smttgvmtrl qreqqqksgg rssavaerer aeraaererv aekaaadaak aaesaaekas 1141 aatkaveata agekvakaaa aaaaaaatta ttattttsss tssssssass astassstas 1201 patlagiaad ktdagktasa sdknaatagg ptatgtptaa ttpatatapp eisaggeaks 1261 knaeeeaaat agaatvatag tpatgasaas ageattatga tataaakgvg kpetatepag 1321 taakgadsrp dandplakta skainaegyn aiggnsssss snatgasapv qgvtlngfkp 1381 gyqtvvmanv kastggddsg anaggaapgs laatnasiat sgdkivkttp ssrapnstss 1441 taanesssga gvntyghtat tagnylgqkl kaaqveglga gnelhsdvse skrkrfelns 1501 geaggnatsa mtnsstsgsm nisnshglka nakdgsmmak tsmastssas vvvtstpsas 1561 ssslssassm llisaasvms taagatssst atttatasai slplladgsg nsmvnaneil 1621 aldgkdklas cfvckaeacp rtrplkkgrg qqygipdeti pagarvcnsc qcksvrsryp 1681 ncplptcpnp kdraqrlrni psrlfelape vrdplmaefq ipphatrccs aclmrirrkl 1741 dpqlnltdgs sggagsgsgg detdvstssc derepggsdt asvespenlq rhksltmvkq 1801 qqqqqqqqqq qqqqqqqqqq qqlsqpqppp papqqqkgss grggdqgtpl iitptrmssk 1861 sgsggaqtag dnerllppaa gqapkkqkts eeydssatet adeenenspa nrqspkvlfh 1921 ghghghggha nnvaglqppv anmgtgggvq pggaagqqvn gpismrreav nnvqdcvfsv 1981 ierslkhkgp qpkggqgqqq gqgqgqgqgq gqtpgqsqsp sqqqqqqqqq qsannlerke 2041 ltivreyrqd pgilkqqqqq qqaggappts aagslphgts vqklttrpaa vappppahpl 2101 tptstgcags nngtsdslat lsvvnshmgm vgighpgpma hassaggigv dkatitpvvk 2161 sssgssksgg gsasshstat ppetiiynvp vahpqrgipp psqhsvhpah pshtqhpahp 2221 qhsshgqhtq lqvpepepqt ldlsikkppr dghsphtgag gssssgsgsg gpsssdrhhg 2281 pppptmsmkh ivrsggmyrg dtvtvpslaa pssylyptrs vktiggggvv pgvlpgvpgs 2341 alylqpvpvp vpisisgqgq lppragqppp aqppsgrgva kvppklspqq ahhlhpshgh 2401 spsqqqqqqq qqqqqqqqqa aaaqqqllvk sgsithgtpa nsaqqqiivh apataaaaps 2461 sllspkfdgl vrqttpegvg svgpggasgs gkhgsitqgt plhmpphhle skrpyesyyk 2521 ssqrhspaqq pggnqqlppp pqqsspqapp pqgygvgvss pyarspfagv veqpqvlstr 2581 qivmhdyits qqmqgqqqqq qqqqqqqrnm srgssasggg ggggsdkesp sprnsvgsas 2641 gfayggdkes aprgrpeyss raspadhvns tpsphrtppp qrqgviqrhn tgskppspaa 2701 pppsrmhmpp yqyapsghda lasfvdvavq qpqlpvpsqk ddkspgpsta pgqvpgsgpp 2761 lgpsplppha vvgvaqpppp tahhdqryrd ltlhhhhhtl vqqqiaqqqh yrslnvaaqv 2821 dmqrqmdqak rvmrhqqhqv qqqqqqqqqq qhnhalerdr emqermrerd rerererere 2881 qrerererer ererererre qdrarrvvae erehdsrrme rmfagnvvtg sggaggggps 2941 pgqflrasvp etgpprsipd reresyyrqa hggpapedtp gqlsaqslid aiikheinrs 3001 ndatagpgre fprpsfvhap lpprgsgsgg gtgtrsspan vlhpmylrdl rqpldggags 3061 mltaenngkp sssgspsvin idldqerisa aaaavaqqqq qqqapppsqs sqsrsvhgql 3121 rtptsqaggs apspqqihtk sitfgeltds iitsdygtnp hlrppymayl qetqsilppd 3181 rwkqnrrmqq kaeeakhhsq qqqqqqhqqq hhaqqqqqqq qqhhaqqhhp qmpgtgsgsa 3241 pggagqgggs ggpgsgggga grastpgedg rniirmpqav sprkfnhemm lhhvmgttga 3301 ggeagqfflp srvvlpeqrg tpsggggapg aggpgsggga ttiekyvktr iaevmrddig 3361 ygknrtvevr tedevtadmv ahshaavhaa hvahaahvah aaamelqhrs keppppeisv 3421 srktpnqyev vdasgrrsag sgsvsvsvsg anshhspyhp paaayapsty afpysalnvp 3481 gaagglpphq plqlahqava ppgafakaka ahalselgav gggvslvvgg gsggiaggpg 3541 gvsvgvgvpg gggpgsgggg ggghnssssq asaavaaava aaaseskpll lskydalsde 3601 d