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LOCUS NP_726978 3239 aa linear INV 26-DEC-2023 ACCESSION NP_726978 VERSION NP_726978.2 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 DBSOURCE REFSEQ: accession NM_167028.3 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (residues 1 to 3239) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (residues 1 to 3239) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (residues 1 to 3239) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (residues 1 to 3239) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (residues 1 to 3239) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (residues 1 to 3239) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (residues 1 to 3239) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (residues 1 to 3239) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (residues 1 to 3239) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (residues 1 to 3239) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (residues 1 to 3239) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (residues 1 to 3239) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (residues 1 to 3239) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (residues 1 to 3239) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (residues 1 to 3239) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (residues 1 to 3239) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (residues 1 to 3239) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (residues 1 to 3239) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (residues 1 to 3239) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (residues 1 to 3239) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (residues 1 to 3239) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (residues 1 to 3239) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (residues 1 to 3239) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. The reference sequence is identical to AAN09135. On Jul 15, 2014 this sequence version replaced NP_726978.1. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## Method: conceptual translation. FEATURES Location/Qualifiers source 1..3239 /organism="Drosophila melanogaster" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" Protein 1..3239 /product="rugose, isoform R" /name="CG44835 gene product from transcript CG44835-RR" /note="CG44835-PR; rg-PR; facetious; pebbled; drosophila A kinase anchor protein; A-kinase anchoring protein; A kinase anchor protein 550; rugose" /calculated_mol_wt=360915 Region 256..404 /region_name="Laminin_G_3" /note="Concanavalin A-like lectin/glucanases superfamily; pfam13385" /db_xref="CDD:463865" Region 468..952 /region_name="DUF4704" /note="Neurobeachin/BDCP, DUF4704 alpha solenoid region; pfam15787" /db_xref="CDD:464870" Region <1262..1636 /region_name="PspC_subgroup_2" /note="pneumococcal surface protein PspC, LPXTG-anchored form; NF033839" /db_xref="CDD:468202" Region 2245..2426 /region_name="DUF1088" /note="Neurobeachin-like, DUF1088; pfam06469" /db_xref="CDD:461925" Region 2450..2547 /region_name="PH_BEACH" /note="PH domain associated with Beige/BEACH; pfam14844" /db_xref="CDD:434260" Region 2579..2855 /region_name="Beach" /note="Beige/BEACH domain; pfam02138" /db_xref="CDD:460459" Region 2956..3228 /region_name="NBCH_WD40" /note="Neurobeachin beta propeller domain; pfam20426" /db_xref="CDD:466575" Region 2978..3014 /region_name="WD40 repeat" /note="WD40 repeat [structural motif]" /db_xref="CDD:293791" Region 3020..3071 /region_name="WD40 repeat" /note="WD40 repeat [structural motif]" /db_xref="CDD:293791" Region 3076..3111 /region_name="WD40 repeat" /note="WD40 repeat [structural motif]" /db_xref="CDD:293791" Region 3123..3153 /region_name="WD40 repeat" /note="WD40 repeat [structural motif]" /db_xref="CDD:293791" Region 3158..3193 /region_name="WD40 repeat" /note="WD40 repeat [structural motif]" /db_xref="CDD:293791" CDS 1..3239 /gene="rg" /locus_tag="Dmel_CG44835" /old_locus_tag="Dmel_CG15464" /old_locus_tag="Dmel_CG6775" /gene_synonym="AKAP; Akap550; CG15464; CG15466; CG44835; CG6775; DAKAP550; Dmel\CG44835; fas; Rg" /coded_by="NM_167028.3:2312..12031" /db_xref="FLYBASE:FBpp0311009" /db_xref="GeneID:44531" /db_xref="FLYBASE:FBgn0266098" ORIGIN 1 mdslerlmra aplprmltsg vvataaaaas aaagkgmvsv gggataiaag ggqqralvha 61 slaaatvgrk grhltgtfcl tgdtmegiiq clvflkafsl vggefdmeln fviqdaqnik 121 hmlelldhcp pnlqaeiwsv fiailrksvr nlqactdvgl iehvlvrlqr setvvadlli 181 emlgvlasys itvkelkllf gtmkatngkw prhsakllnv lrqmphrngp dvffsfpgrk 241 gsamvlppla kwpyengftf ttwfrldpin svnierekpy lycfktskgv gytahfvgnc 301 lvltsmkvkg kgfqhcvkye fqprkwymia ivyiynrwtk seikclvngq lasstemawf 361 vstndpfdkc yigatpelde ervfcgqmsa iylfsealtt qqicamhrlg pgyksqfrfd 421 necylnlpdn hkrvlydgkl snaivfmynp vatdgqlclq sspkgnvsyf vhtphalmlq 481 dvkavvthsi hctlnsiggi qvlfplfsql dmaheglgdi krdptlcskl lgficelvet 541 sqtvqqhmiq nrgflvisfm lqrssrehlt levlgsflnl tkylvtclsa nsdlllkqll 601 dhvlfnpalw iytpanvqar lysylatefl sdtqiysnvr rvstvlqtvh tlkyyywvvn 661 praksgiipk gldgprpaqk dilairayil lflkqlimig ngvkedelqs ilnylttmhe 721 denlhdvlqm lislmsehps smvpafdvkh gvrsifklla aesqlirlqa lkllgfflsr 781 sthkrkydvm sphnlytlla erlllyeesl slptynvlye imtehisqqi lytrhpepes 841 hyrlenpmil kvvatlirqs kqteslidvk klflqdmtll cnsnrenrrt vlqmsvwqew 901 liamayihpk sseeqkisdm vyslfrmllh haikheyggw rvwvdtlaiv hskvsyeefk 961 lqfaqmyehy erqrtdnitd palrqarpis tisgwereel hqqqnggsaa avatnqtaav 1021 kgsvsiasle dvppvveeev eeleleevei qegpiteete qksvianisd vyneqlktda 1081 tcngnledvk eeepvqqqig dlekqpepst plgalretlq lgddmdveel elatakdaln 1141 aeqhvsrvlq aseaalndck mavddvlqes ssvlkdeeie lavnevvqgv lnnekktqsq 1201 dnkdnkeqpg eqdvnvslln sknllnnnnn nnnnspsptp ttatataete aetevnanei 1261 vssteapkae tetsvapeve tpetakpspi vpspvlatnq ktedaankln nneklaeisa 1321 speppivvet peadllqlsd setkpnkete aedsvalavr diveqlidkv idateaesas 1381 etktetnnne ipkkekqtse epedvetaet laaaakeivq evveaalvmv qeestqekpe 1441 kganseeekn eigkeeillq leekpastev qetkiegdlk kpedpkghss vepktpnlee 1501 pkpqeteqqk sqevaeelpq kpeeqvvaiv nqvldtlvdd tvkavaaeqt tqtspapeeq 1561 spqilamesp atsvrvkpte vdsttqttpk neagssllve qvqqvlqedd aqqsagmtie 1621 dedysnqqaa aavenanssq ldanhygpgn peskqqqqrs ksgstrpmfs pgptrppfri 1681 pefkwsyihq rllsdvlfsl etdiqvwrsh stksvldfvn ssenaifvvn tvhlisqlad 1741 nliiacggll pllasatspn seldvleptq gmplevavsf lqrlvnmadv lifatslnfg 1801 eleaeknmss ggilrqclrl vctcavrncl eckertrynv galardvpga ahlqalirga 1861 qaspknives itgqlspvkd pekllqdmdv nrlraviyrd veetkqaqfl slaivyfisv 1921 lmvskyrdil eppaepqiqr qspvlqrtag gggrqiqdsd yeiivvdenn psvladndsh 1981 ssgppsiksv dsdvgslnmn stenevpeve ssseiliddh kpshsndesw tdvnlnedaa 2041 vqaasagivv glvdnrgnvi sdkhdpshhn qqqqqqagii gqqqqhgslg hsergdkpds 2101 eisvvrvpdg yggagsgggv nsgqgqgvps nqrprpeelp mkapalvaql plttpsreas 2161 ltqkleialg pvcpllreim vdfapflskt lvgshgqell megkglttfk nshsvvelvm 2221 llcsqewqns lqkhaglafi elinegrlls hamkdhivrv aneaefilnr mraddvlkha 2281 dfesqcaqtl lerreeermc dhlitaarrr dnviasrlle kvrnimcnrh gawgdsssts 2341 sggaivgavq kspywkldaw eddarrrkrm vqnprgsshp qatlkaalen ggpedailqt 2401 rdefhtqiav srthpsgqhn gellddaell iedreldldl tgpvnistka rliapglvap 2461 gtvsitstem ffevdeehpe fqkidgevlk ycdhlhgkwy fsevraifsr ryllqnvale 2521 iflasrtsil fafpdqhtvk kvikalprvg vgikygipqt rrasmmsprq lmrnsnmtqk 2581 wqrreisnfe ylmflntiag rtyndlnqyp ifpwvltnye skdldlslps nyrdlskpig 2641 alnpsrrayf eeryeswdsd tippfhygth ystaaftlnw lvrvepfttm flalqggkfd 2701 ypdrlfssvs lswkncqrdt sdvkelipew yflpemfyns sgyrlghred galvddielp 2761 pwakspeefv rinrmalese fvscqlhqwi dlifgykqrg peairatnvf yyltyegsvd 2821 ldgvldpvmr eavenqirnf gqtpsqllme phpprssamh lspmmfsamp edlcqmlkfy 2881 qnspvihisa ntypqlslps vvtvtaghqf avnrwncnyt asvqspsyae spqspgsnqp 2941 ltidpvlavh gtnnnsnaas rrhlgdnfsq mlkirsncfv ttvdsrflia cgfwdnsfrv 3001 fatetakivq ivfghfgvvt cmarsecnit sdcyiasgsa dctvllwhwn artqsivgeg 3061 dvptpratlt gheqavtsvv isaelglvvs gssngpvlih ttfgdllrsl dppaefhspe 3121 litmsregfi vinydkgnva aytingkklr hethndnlqc mllsrdgeyl mtagdrgive 3181 vwrtfnlapl yafpacnagi rslalthdqk yllaglstgs iivfhidfnr whheyqqry