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LOCUS NP_572640 2666 aa linear INV 26-DEC-2023 melanogaster]. ACCESSION NP_572640 VERSION NP_572640.2 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 DBSOURCE REFSEQ: accession NM_132412.3 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (residues 1 to 2666) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (residues 1 to 2666) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (residues 1 to 2666) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (residues 1 to 2666) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (residues 1 to 2666) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (residues 1 to 2666) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (residues 1 to 2666) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (residues 1 to 2666) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (residues 1 to 2666) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (residues 1 to 2666) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (residues 1 to 2666) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (residues 1 to 2666) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (residues 1 to 2666) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (residues 1 to 2666) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (residues 1 to 2666) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (residues 1 to 2666) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (residues 1 to 2666) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (residues 1 to 2666) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (residues 1 to 2666) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (residues 1 to 2666) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (residues 1 to 2666) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (residues 1 to 2666) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (residues 1 to 2666) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. The reference sequence is identical to AAF46608. On May 8, 2012 this sequence version replaced NP_572640.1. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## Method: conceptual translation. FEATURES Location/Qualifiers source 1..2666 /organism="Drosophila melanogaster" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" Protein 1..2666 /product="uncharacterized protein, isoform B" /name="CG43347 gene product from transcript CG43347-RB" /note="CG43347-PB" /calculated_mol_wt=282832 Region 1031..1146 /region_name="PR-SET_PRDM-like" /note="PR-SET domain found in PRDM (PRDI-BF1 and RIZ homology domain) family of proteins; cd10534" /db_xref="CDD:380932" Site order(1044..1045,1062,1107..1111,1113,1122..1123) /site_type="active" /db_xref="CDD:380932" Site order(1044..1045,1107..1111,1113) /site_type="other" /note="SAM binding site" /db_xref="CDD:380932" Region 1198..>1268 /region_name="NR_DBD_like" /note="DNA-binding domain of nuclear receptors is composed of two C4-type zinc fingers; cl02596" /db_xref="CDD:413390" Site order(1198,1201,1227,1230,1248,1257,1267) /site_type="other" /note="zinc binding site [ion binding]" /db_xref="CDD:143532" Region 1198..1219 /region_name="C2H2 Zn finger" /note="C2H2 Zn finger [structural motif]" /db_xref="CDD:275368" Site order(1218..1219,1222,1228..1229,1231,1233,1236,1239, 1264..1265,1268) /site_type="DNA binding" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:143532" Region 1227..1246 /region_name="C2H2 Zn finger" /note="C2H2 Zn finger [structural motif]" /db_xref="CDD:275368" Region 1259..1280 /region_name="C2H2 Zn finger" /note="C2H2 Zn finger [structural motif]" /db_xref="CDD:275368" Site order(1264,1266,1268,1270..1271,1274..1275,1279,1309,1311, 1315..1316,1319..1320,1323,1339,1341,1343,1345..1346, 1349..1350,1354) /site_type="other" /note="putative nucleic acid binding site [nucleotide binding]" /db_xref="CDD:275368" Region 1304..1324 /region_name="C2H2 Zn finger" /note="C2H2 Zn finger [structural motif]" /db_xref="CDD:275368" Region 1332..1355 /region_name="C2H2 Zn finger" /note="C2H2 Zn finger [structural motif]" /db_xref="CDD:275368" CDS 1..2666 /gene="CG43347" /locus_tag="Dmel_CG43347" /old_locus_tag="Dmel_CG15295" /old_locus_tag="Dmel_CG9817" /gene_synonym="BcDNA:RH11383; CG15295; CG9817; Dmel\CG43347" /coded_by="NM_132412.3:357..8357" /db_xref="FLYBASE:FBpp0297864" /db_xref="GeneID:31991" /db_xref="FLYBASE:FBgn0263072" ORIGIN 1 mkkkqkqkqq qqqqqrqska pseaeseadr pgsnssstsn nkhsppaast ttttkrrqvs 61 ssnnntsnhk nnskrcsrss ssssscssss ssssnasvgs smsktssgnp aaagatnaan 121 aadfsafdfn dssdnsdtpl vprppflsra aataaaaaaa aaalsisnns nnsagsagql 181 phstssssnn nnnnnnnnga nsvnsnannn nyghsssssq ssmdeeeedd eeedeeeeee 241 qdvsqqqqqq qqlaaeqqqr aaaaaavvaa avsalhngnk qqhynnnnnn nnngntksrd 301 radhhlqsqq qqehdddedd deeegeeded eddeeqhqeq qqqhqgnghd ltptdlrhvm 361 pasnnlqqqh tqqqqepaay ddegeeeded dddedevass hldsratlss ghlnsaaaae 421 ssglhmsvaa aaaaaaaaaa avsaaklnaq leqqqsanal dmasgssatp iappppssll 481 ggnsntsfst nnnsnhalss thgslgpggq gtncsndlma tgggnsrggs slslginsss 541 aaalqhqhqq qqqqqqhggg sggssaaser rkyrhqnysk niyigtknae kwehmrtrlq 601 fkndvefvay llnladndtd rlnnlpppsp antptkgfdg nfklepnlsa kdfatpaess 661 ingngsgnts gngngdsasa asipmvtptp pqrkrykkrv qftsetlngf agktkgsgsg 721 gagagfsyak skkqeakaat aalkasaaaa aaaaassalp evldcriaek ikseleansk 781 eslpnalclk kaaaaaaaaa aaaaavaaaa ngseeedede dqpphphllp vlppadavdg 841 itasngqagn fhvrsksqgs kksqaakaaa aammppnsyd ehddepgagl ggndeddddd 901 eeldeealar emkmeqnfve eedehdiafr shqscrecsi ahdhklcplr nacgnvtdav 961 dlgewierrn lealaklkad aqrqakrasg rqrhedddme dmedmdmdmd essqlselet 1021 kplitfaeas vpaefelhnv epnvtgvfar tevraftklg pligqpvqtg evregsdmkw 1081 ifemceagad ksyllccdnp nasnwlrfvr papsyeernv nlvsidrqay fvscrdlrng 1141 mellywsddc ntmwrkkhte ktncggcnlk fehplyyrth csvfhdpsms ltirkyhckv 1201 cgepvlgkdn imkhaaekhd gkgayqcqfc skfflrlnyl emhrtygcas npnrsrpvcd 1261 fcgrkfcqpq klkahikrmh sgsraalqrh skevhsrnst vvscprcqkl fqnrsnlkih 1321 mlthsgvrpf kcaepecnaa fttkqclqfh ykkvhnytqe qmpkiersva ytfdaysggm 1381 kvdflgkqta tatpasaasa qaqprpnaav vspssfteqa prrrrksled qssmlsgslq 1441 sdaefsddnl feaikksgks ikdlcrnepn lsllsskiss ifgdkvpsat aslsasvsav 1501 assgarkrkr kkepvvpaqq qlhlhqqqqq qqqqqqqsqh qqqhqqqhaq qlqhqqlqqq 1561 haqqhqqqqh hlhqqhqqlh hdpqqqhpqy hphqlhahal phqqqqqqqq qqqqqqqlhg 1621 dpddeevena rleqvrrkqn aqlslvesfl tttaqrlsaq qqvqqvvaaa aavsamagag 1681 edpaklghmm ghmgvgvgvg mdeeeddded dddggggggg gggsavqhhp hvhahqahhs 1741 hvhahahphh ahshahphqh pasqgagqqd yrhaaamnaa lgqnlvvskg skkwiqevqd 1801 ssdvggegag gggggpgdsg gpggggacgq laggsgpgpd lgfavpptav dehskllgqn 1861 rdflarlmss asashahaha hahahahqph qthqqhqhsa hsreedenss fldvvesnnn 1921 aaaaaaaaaa lshygggags gsagggsggq tptgpatggg svaggdepqm qmnslahsqs 1981 fmssfynnan arvggvgggv vgvgvgggss sasmlveaal nsvgnmidse ssdlkvptdn 2041 hinsdspmsa hvdpesqrfg agsaggaggg ggggggggss ggssggangs gigggmdnle 2101 nelkmmknlg sfpmqipplp mfqgacnisp sastptnpqs nqnqndvdvd agstprpqhp 2161 dsdgfssshh rtppspppis pgrdyggmfg agnggggpgs nstpagsssg ggggggggag 2221 gggansmsas splpalqpqr rnassvgsty pehelispas spsiprynfn gdmmrhkrav 2281 qeqehqerqr qnisrhnqms sdeensimpq nsagqdmrmk fpqsqidlmy skyesmasnl 2341 kynsqdldsp aeyrqggagn ggnaaasaaa aaaaaasaan dlsdlqgldm ssrsnaassn 2401 yhhnfqlpss ryhhhiydil sdreqqsqqa qqaggavvgg gggggagaas vvhqqehghg 2461 qhhamqqhqq saaamhnmls eqlgeqehdq ttsvdlsrta nyvvssppql pynhpthhdm 2521 lrmasldltp ntanmavgnn rsflssqmqh qsreslehhr llstveqhri laasnaadqh 2581 rllvdptahl lmeqnnrllg tadqsrllge saaaaaqnrh marsfgayhq vassnyhpgv 2641 rpppvlpsan hhasnpsnyh pfpayy