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LOCUS NP_572302 3426 aa linear INV 26-DEC-2023 ACCESSION NP_572302 VERSION NP_572302.2 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 DBSOURCE REFSEQ: accession NM_132074.3 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (residues 1 to 3426) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (residues 1 to 3426) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (residues 1 to 3426) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (residues 1 to 3426) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (residues 1 to 3426) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (residues 1 to 3426) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (residues 1 to 3426) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (residues 1 to 3426) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (residues 1 to 3426) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (residues 1 to 3426) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (residues 1 to 3426) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (residues 1 to 3426) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (residues 1 to 3426) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (residues 1 to 3426) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (residues 1 to 3426) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (residues 1 to 3426) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (residues 1 to 3426) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (residues 1 to 3426) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (residues 1 to 3426) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (residues 1 to 3426) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (residues 1 to 3426) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (residues 1 to 3426) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (residues 1 to 3426) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. The reference sequence is identical to AAF46135. On Jan 31, 2011 this sequence version replaced NP_572302.1. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## Method: conceptual translation. FEATURES Location/Qualifiers source 1..3426 /organism="Drosophila melanogaster" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" Protein 1..3426 /product="Rabconnectin-3A" /name="CG3585 gene product from transcript CG3585-RB" /note="CG3585-PB; Rbcn-3A-PB; Rabconnectin-3alpha" /calculated_mol_wt=377192 Region <103..298 /region_name="WD40" /note="WD40 repeat [General function prediction only]; COG2319" /db_xref="CDD:441893" Region <1758..2176 /region_name="Rav1p_C" /note="RAVE protein 1 C terminal; pfam12234" /db_xref="CDD:432413" Region 3158..3412 /region_name="WD40" /note="WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from...; cl29593" /db_xref="CDD:475233" Region 3203..3243 /region_name="WD40 repeat" /note="WD40 repeat [structural motif]" /db_xref="CDD:293791" Region 3248..3290 /region_name="WD40 repeat" /note="WD40 repeat [structural motif]" /db_xref="CDD:293791" Region 3297..3332 /region_name="WD40 repeat" /note="WD40 repeat [structural motif]" /db_xref="CDD:293791" Region 3338..3380 /region_name="WD40 repeat" /note="WD40 repeat [structural motif]" /db_xref="CDD:293791" CDS 1..3426 /gene="Rbcn-3A" /locus_tag="Dmel_CG3585" /gene_synonym="anon-X; CG3585; Dmel\CG3585; Dmx; DmX; FV10; rbcn3A; X" /coded_by="NM_132074.3:140..10420" /db_xref="FLYBASE:FBpp0292404" /db_xref="GeneID:31557" /db_xref="FLYBASE:FBgn0023458" ORIGIN 1 mnchqilsga cnagdrcfai gsvegipfta yaagcnvvil astfervqii pganhgyvki 61 saldcstdtg kiaaayenki cifeptpvie sskhnthfld yrwvqtgsft shsnvvtlsw 121 nlegtrlltg gtniqlwksk spthqqeeeh tgvkfeiges kepkqtsnaq sedvstweni 181 wscqtaipiy hmafspdgtl fatcgrndrl vkiwyenkqv lfpakgssna gptpscrhgv 241 ddgttsssgg elnftyvyia hpravsnivw rktskympkg svanmlvtsc ldnicriwie 301 tvlpddgmvn mtqfdpmasq npkfrthrhk hrfmqrlkhm ktcfhirrhm kagasavpga 361 asagaasggg tagamggmgs spasytnylg pipslpsscs vhdfhsygfq gsgvtpgmhf 421 hlaasinaet diplvpsmqt sdpanqnvfi lhwlnnkemh ftlqaeailq eltkkvidee 481 nghgnassgg vdlpddahgs hsqahahkky lrssksvsvd dsgeefsrys qhtagtgmgg 541 ggggaglhln smsnttsqns lnnepahpit qlvdsldnki ecllrdwhqs pdllfaihpv 601 dgsyliwvie wlddyypgsf rqaqvsfstr ipsafplgda msmsttvslf ntgthplafr 661 diannvrskd efhkghadds slksdqhsgq tferhdeeqe daadddgdgd regdadqdeg 721 ggdrsaaasg ggaaehssss qdsaatgasa lplnvspsvs mvtkhsngtl nlwqltfafk 781 tkftqvlsig hvsrasghrf rvnditchpv lpllvstshh nlpdseaksp mslfeqplsg 841 glpsgggtga gpsvgsngdk dvftptgfcs elilwrvdsv gplchsggvs elarinspei 901 safsnvawip tllpsttlgs ysnspsacfv asdgenlrvy qavidartll aeiscsenln 961 tlhkshslss misnasstmr aqrsalhdkl kvvsqqstar pgcilqldai sdakhdwqnt 1021 qflhvfqaql itggqrtpqa dphdleeprl nallesdmda ivdlqrnadf eepfyivnie 1081 ktlrgstihm wrivisskqq ssflsetamy vpdsnltqep dedgaggnpn prrmsqgaet 1141 ltgaehfgpq veaphisitt kkvctqelpl pegvdvihas paaghlssss iypacfapyi 1201 ivtacsdsis rfwkcepigd eddpnpegda yhwsewkmfs riqhsaieip gqplnisaay 1261 sgriacayky gksftrpnkg pdpdsryvnl cvaiyecess ggsewvledt ihlknvhlpr 1321 inighgidls ylhdsrllak kqrlnqvlht fahdpesrsp rsgettpela vnrqpsaaas 1381 glltvpsfst lqslrksiae ngntcpltqk hlvqldwvsk edgshiltva vgskillytp 1441 vssdiaqani kamkesrsvn rpilrkassl aqpnfvdeir wmklrqidlq tadglpplpm 1501 qiswvrdgil vvamdsemhv ysqwkphyss hfaaaaaaag edvpdtrnlr dedlrslane 1561 stqlrlknva smpliskvst anlqllshdk krrlgntsma nmngaggagg tgtygggadd 1621 ggnddymtdf glfqasriac pvlpqyhpkq lmellncgki rwvkailahl vrcmsgnsss 1681 tvnqdddgya rqrswsrsrt lsisytadqn iqaehrgstt qipeelmldy aeinsipplp 1741 lwvllnadre tpgqsnnyae gdkdydelfd mhnsednlde llsegdekkr qerrlslpek 1801 hsishfgprq gqllsrllth thlpglssld qmhllaladt vatcntdfsd kfaadqgksg 1861 gmaggagsga vkdgststds lddcglrfll amkhftyllr clplqqraqf qrqgvgtsni 1921 vwafhsesee ellnlipsyt kgdlrwatlr dlgvgywlkn intlrrcvek lakcayqqkq 1981 epldaaiyyl amkkkslvwg lfrsrrdekm taffgnnfae drwrkaalkn afvllgkqrf 2041 ehavafflla nslndaievc mnkledfqla liiarlyegd gegcyyhhll hehilgtdaa 2101 tgrcdlsrah pdpflrsmty wtikkyqesl ntlllnnvgs lhssyreedl lrpeqqatnp 2161 nvfnfyiylr thpllirqni alsaqekria hvvlsgfnya gdaapsavac dkqlqledsi 2221 tpierqlyft tahghfksgc palalevlnk lpqkisddsg gsvagsqaqe raqqnkeeli 2281 ntgimdqwga tpaaasntad afdwgapvss epeakfeikw ddedeeedpd lepdepelat 2341 pqpqapilgr gksngndtkm dimaqqlkfv aclkilmeel stlatgfevd ggqlryqlym 2401 wlerevealk qlcnycsqae qsshesgdad aeardkemna siypsterpt lheilmqdkq 2461 dfeakvmraa krkrwlkane tllrtllsyc slhgasgggl asvrmelvll lqelqqektq 2521 qqllsplpfp ttlpllsacv agnktviadp ikylqsqtvd mlqsiikvlp fpgiepsals 2581 eifvlrdlav alssciyqsl cdsesfvvnn safngypspg meniakinss fecsylvgsr 2641 naygrrrkys tdepagvctt pskwpgvtnl rallarekde dvpklnvlll esfvstymal 2701 fiyslstcds rllyrlsgqs fnnetwstlf gggmkkllik paaappptqm vtggagagga 2761 sggtgstsee ptdensvwnt vtsitkqrmk lnmkilgsfs qnstssnmke dkptyreqfm 2821 ppetsmlsyf ltkppttecd dydtddshes dneeeeeddd dvnvsrsqlk akdntehtnp 2881 tsyswsilrl alikisthki qelvkvagie lqdlpvispl shevlrtlnr wqdfalsdli 2941 argppsrnyi pgcyaesgin glaihkyrsl lnkdntpfvs gssagpirrl wnylvrqepa 3001 qevfiksifv knmepstrgs hhtnndnetd egqshstnen tdhiriihkd hesilsfclk 3061 nnsssmiafa npreiqefdi slllespnwy edecdydmmn lskdadtnss sfliiqtqeq 3121 nqfgsnsnay sesnastqsa sqsgrgtsmv lrhkvdnvkr msahplmply ltggqdgsvq 3181 iwewghqqpv csprtsgtfa kvtrcrfseq gnkfgigdgd gklslwqagi asqnnrsfis 3241 yqchnkalsd fvflgscsll asagqssenk niniwdtllp hkkscvsaft chdqgssclv 3301 fapqhqvlis cgkrgdvcvf dvrqrtlrhr yqahdstikc ialdpheeff vtgsiegdik 3361 iwdmnqfmli ntfphehakn gffkhtgqgv sqvyvdafgr lfscgsdgcm kvrllvekdn 3421 ivhsvy