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LOCUS NP_511137 3004 aa linear INV 26-DEC-2023 ACCESSION NP_511137 VERSION NP_511137.3 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 DBSOURCE REFSEQ: accession NM_078582.4 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (residues 1 to 3004) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (residues 1 to 3004) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (residues 1 to 3004) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (residues 1 to 3004) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (residues 1 to 3004) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (residues 1 to 3004) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (residues 1 to 3004) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (residues 1 to 3004) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (residues 1 to 3004) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (residues 1 to 3004) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (residues 1 to 3004) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (residues 1 to 3004) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (residues 1 to 3004) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (residues 1 to 3004) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (residues 1 to 3004) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (residues 1 to 3004) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (residues 1 to 3004) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (residues 1 to 3004) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (residues 1 to 3004) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (residues 1 to 3004) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (residues 1 to 3004) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (residues 1 to 3004) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (residues 1 to 3004) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. The reference sequence is identical to AAF48154. On Nov 6, 2002 this sequence version replaced NP_511137.2. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## Method: conceptual translation. FEATURES Location/Qualifiers source 1..3004 /organism="Drosophila melanogaster" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" Protein 1..3004 /product="tenascin accessory, isoform D" /name="CG42338 gene product from transcript CG42338-RD" /note="CG42338-PD; Ten-a-PD; Teneurin-a; central-body-defect; teneurin; tenascin-like molecule accessory; central body defect" /calculated_mol_wt=327307 Region 563..586 /region_name="EGF_2" /note="EGF-like domain; pfam07974" /db_xref="CDD:400365" Region 629..651 /region_name="EGF_2" /note="EGF-like domain; pfam07974" /db_xref="CDD:400365" Region 660..683 /region_name="EGF_2" /note="EGF-like domain; pfam07974" /db_xref="CDD:400365" Region <661..772 /region_name="C_rich_MXAN6577" /note="MXAN_6577-like cysteine-rich domain; NF041328" /db_xref="CDD:469225" Region 789..818 /region_name="EGF_CA" /note="Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the...; cd00054" /db_xref="CDD:238011" Region 825..851 /region_name="acid_disulf_rpt" /note="acidic double-disulfide repeat; NF033662" /db_xref="CDD:411265" Region 1239..1544 /region_name="NHL" /note="NHL repeat unit of beta-propeller proteins; cl18310" /db_xref="CDD:302697" Region 1292..1338 /region_name="NHL repeat" /note="NHL repeat [structural motif]" /db_xref="CDD:271320" Region 1362..1404 /region_name="NHL repeat" /note="NHL repeat [structural motif]" /db_xref="CDD:271320" Region 1419..1464 /region_name="NHL repeat" /note="NHL repeat [structural motif]" /db_xref="CDD:271320" Region 1481..1514 /region_name="NHL repeat" /note="NHL repeat [structural motif]" /db_xref="CDD:271320" Region <1735..>1865 /region_name="RHS_core" /note="RHS element core protein; NF041261" /db_xref="CDD:469161" Region <1983..2632 /region_name="RhsA" /note="Uncharacterized conserved protein RhaS, contains 28 RHS repeats [General function prediction only]; COG3209" /db_xref="CDD:442442" Region 2889..2966 /region_name="Tox-GHH" /note="GHH signature containing HNH/Endo VII superfamily nuclease toxin; pfam15636" /db_xref="CDD:464783" CDS 1..3004 /gene="Ten-a" /locus_tag="Dmel_CG42338" /old_locus_tag="Dmel_CG12720" /old_locus_tag="Dmel_CG15733" /old_locus_tag="Dmel_CG32659" /gene_synonym="1.2; cbd; CG11270; CG12720; CG15733; CG18182; CG2578; CG2590; CG32659; CG42338; Dmel\CG42338; Dmtena; DmtenA; ten-a; Ten11A; tenA; tenA(AT)[[14]]; ten[a]; Ten[a]" /coded_by="NM_078582.4:198..9212" /db_xref="FLYBASE:FBpp0289136" /db_xref="GeneID:32183" /db_xref="FLYBASE:FBgn0267001" ORIGIN 1 mtmksmkysd cdtimdgynp vppplprrvp pvrniyaepf ahepnhssrl gghpqqmpqs 61 mstgsntigh ggidrggvgl pmgagtmpgg vgggpggvag ggpqvgvgpp gsgnggncqi 121 sgsqplvmpg fplrnshsah aphyspysps rfhidkrcqh rcswkclsia lifvsvvlta 181 mlayfaavss mkpnmdstnc ilvqdvksqp hdlrgglaks nekgvatafp teesiqtsts 241 dhgqnghglm npsagsggsn sgiqqqlllq qqqphsinqp ltpldatnth lqdhhqltyg 301 galpggvggi gmsgggimng glngglggql mqqpggglng hhhqalqpql ggvvelkefn 361 eayhatipay qfwtlefrnk hpafirfnft lpwgahfavy srrnvapsvt qhdfvefikg 421 grldshlrhr rssanatttg qdmelyrqdk dqsaesaqdq dseqdesrsf dssesydvet 481 pldtakqhlq rigkpqshwv nkrsagdglp aldvdamtvn vsllqyldtg lwfisvynde 541 lvahsvslla eeaegvsttc pndcsgrgsc ylgkcdcidg yqgvdcsksv cpvlcsahgh 601 ygggvchcee gwkgaecdip vgecevpncs shgrciegec hcergwkgpy cdqhdcldpl 661 csghgtcvag qcyckagwqg edcgtidqqv yqclpgcseh gtydletgqc vcerhwtgpd 721 csqavcsldc grngvcesgk crcnsgwtgn lcdqlpcdsr csehgqckng tcvcsqgwng 781 rhctlpgcen gcsrhgqctl engeyrcdci egwagrdcsi alelnckdni dndgdgmtdc 841 sdseccshpa csehimclss ndpvevllrk qppsvtasfy qrvkflieen svqsyahmde 901 ysenrvsvmr gqvitpqglg ivgirvsvdr dsrfgftltr qggwfdvlvn gggavtlqfq 961 rspfrpltrt vfvpwnrivv lppvqmqlsd ddettsrnik vaplnpaltf lnsihyhtad 1021 eandaskvcm dhdheklrpq listwmpngv gampgkrvif aetqivqesi qipgsdlhlt 1081 yqssqasgyl sivrmrltge tipptlthvh vgveiegalh vktyeadpsl vhtfawnkrn 1141 vyrqkvygvt varisvgyqh stcqspvwia qtaklqgydv disdiggwgl dihhhynfhe 1201 gilqkgdgst lhmkeyprtv kvvmgtglqr pltcpdycng vakdaklltp ialatgpdgs 1261 lyvgdfnlvr ritpdgkvyt ilqlsatqvs yqyylavspa dghlyisdpe rhqilrlvrl 1321 ekvkdpsins dpvvgsgqrc ipgdegncgd ggpallarls hpkglaiaad rtmyiadgtn 1381 iravdpkgvi htlighhghh nhwspapcsg tlmanqaqlq wptglalspl dgslhfiddr 1441 lvlrltsdmk irvvagtplh csnggqdgrv nktgadnvlg tvlamafspf gnlyiadsds 1501 rrvnsirvvd tagnmryfag kqegtgsqtc dcaigggsng satnsgvgga ggsaysttvn 1561 ptrpnggttp ttpsggngng ngngssatss ggsvggsngs ggganggaci caggialstg 1621 tgsssgsngg gtlasivgsg glmstgpttt ttvllgaktt aagigaatln ddgtlsnaet 1681 llssnarfqa isaiavaqdg vinvadqgsl hvlalehylp shdengefhi pfppsseiyv 1741 fnrygqhvat kdltsgktry sflyskntsf grlstvtdas gnkiqflrdy snvvssient 1801 qdhkseiqin gigimtklse kgrqeieldy dsntgllnsr ssggetyiyq ydefgrvtgm 1861 ilpsgeivri tsqladsqgl tvyvhasves lfsreriage anellvlggv rstflkrgqa 1921 hadaelkann tlvihgdngv vveasavarh plleaalpve aemlamwshq svtmgegltn 1981 smysvyslvg dvrnpqqtln reiwvnqsrv igvefdqftn retfydarrt pilivaydqs 2041 glpksyyptn gypvnitydr fnrvegwawg paelkysydr hgllseitsq qdgivsfvyn 2101 dwnlvseigl asqrkfvlqy ddagglrhvv lpsgtrhsfs mqtsigfirc tytppgstra 2161 ylqhyshaga llqtilpgdg arivyrynaa gqltevvhgd grsefqynea tgmpstvsht 2221 ereleyrwdf eyaagllaee ridyvaktgl snakfsyeyd sqlrvvalqg riggqslptq 2281 afaydprtgr psligqfrfs qpaqnqtqlh dgtasftrtv dgrfqtqrma laihrlevfr 2341 mefsygvhgr isqtrtytrn mavnsytnvk nytwdcdgql vgveaqepwg fryddngnll 2401 sltyrgntip meynaqdriv kfgegqykyd arglvaqnar eerfhyntqg llvraskrgr 2461 fdvryyydhl krlttrkdnf gnvtqffytn qqrpyevsqi ysprdgklms ltyddvghli 2521 yaqvyrhkyy vatdqsgtpl mlfnqygegi reimrspfgh ivydsnpyly lpidfcggil 2581 dqvttlvhmg dgrvydplig qwmspdwqrv aeriitptrl hlyrfngndp invgherhyp 2641 edfaawmrtl gynvgnlvpq lardlwqppa lwgrppanpv alnlrrpfdn iptmavesgf 2701 lahlnvrrms dfeqlsappr salkcdvmdp spktigsdte ppfgkgivvs rtadgqaivs 2761 svpaanaiyr dvytsvfnrs kllpftfvvh naqqdsfffv kedawrated rqqlkrlqgq 2821 vnttfheitr eatvgsgpag aanggagsss ssssssgggs ssntgnyldv kihgahaiin 2881 lrygttvake qqrlmhhakl tavrkawhre kealrsgltt alewsqqetd eilkqsyann 2941 yegeyihdvn lypelaedpy nikfvkkkga tggaagvpns rrrrrrstdl iqeeeeelhr 3001 eadc