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LOCUS NP_417134 1526 aa linear CON 09-MAR-2022 substr. MG1655]. ACCESSION NP_417134 VERSION NP_417134.2 DBLINK BioProject: PRJNA57779 BioSample: SAMN02604091 DBSOURCE REFSEQ: accession NC_000913.3 KEYWORDS RefSeq. SOURCE Escherichia coli str. K-12 substr. MG1655 ORGANISM Escherichia coli str. K-12 substr. MG1655 Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia. REFERENCE 1 (residues 1 to 1526) AUTHORS Riley,M., Abe,T., Arnaud,M.B., Berlyn,M.K., Blattner,F.R., Chaudhuri,R.R., Glasner,J.D., Horiuchi,T., Keseler,I.M., Kosuge,T., Mori,H., Perna,N.T., Plunkett,G. III, Rudd,K.E., Serres,M.H., Thomas,G.H., Thomson,N.R., Wishart,D. and Wanner,B.L. TITLE Escherichia coli K-12: a cooperatively developed annotation snapshot--2005 JOURNAL Nucleic Acids Res. 34 (1), 1-9 (2006) PUBMED 16397293 REMARK Publication Status: Online-Only REFERENCE 2 (residues 1 to 1526) AUTHORS Hayashi,K., Morooka,N., Yamamoto,Y., Fujita,K., Isono,K., Choi,S., Ohtsubo,E., Baba,T., Wanner,B.L., Mori,H. and Horiuchi,T. TITLE Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110 JOURNAL Mol. Syst. Biol. 2, 2006 (2006) PUBMED 16738553 REFERENCE 3 (residues 1 to 1526) AUTHORS Blattner,F.R., Plunkett,G. III, Bloch,C.A., Perna,N.T., Burland,V., Riley,M., Collado-Vides,J., Glasner,J.D., Rode,C.K., Mayhew,G.F., Gregor,J., Davis,N.W., Kirkpatrick,H.A., Goeden,M.A., Rose,D.J., Mau,B. and Shao,Y. TITLE The complete genome sequence of Escherichia coli K-12 JOURNAL Science 277 (5331), 1453-1462 (1997) PUBMED 9278503 REFERENCE 4 (residues 1 to 1526) AUTHORS Arnaud,M., Berlyn,M.K.B., Blattner,F.R., Galperin,M.Y., Glasner,J.D., Horiuchi,T., Kosuge,T., Mori,H., Perna,N.T., Plunkett,G. III, Riley,M., Rudd,K.E., Serres,M.H., Thomas,G.H. and Wanner,B.L. TITLE Workshop on Annotation of Escherichia coli K-12 JOURNAL Unpublished REMARK Woods Hole, Mass., on 14-18 November 2003 (sequence corrections) REFERENCE 5 (residues 1 to 1526) AUTHORS Glasner,J.D., Perna,N.T., Plunkett,G. III, Anderson,B.D., Bockhorst,J., Hu,J.C., Riley,M., Rudd,K.E. and Serres,M.H. TITLE ASAP: Escherichia coli K-12 strain MG1655 version m56 JOURNAL Unpublished REMARK ASAP download 10 June 2004 (annotation updates) REFERENCE 6 (residues 1 to 1526) AUTHORS Hayashi,K., Morooka,N., Mori,H. and Horiuchi,T. TITLE A more accurate sequence comparison between genomes of Escherichia coli K12 W3110 and MG1655 strains JOURNAL Unpublished REMARK GenBank accessions AG613214 to AG613378 (sequence corrections) REFERENCE 7 (residues 1 to 1526) AUTHORS Perna,N.T. TITLE Escherichia coli K-12 MG1655 yqiK-rfaE intergenic region, genomic sequence correction JOURNAL Unpublished REMARK GenBank accession AY605712 (sequence corrections) REFERENCE 8 (residues 1 to 1526) AUTHORS Rudd,K.E. TITLE A manual approach to accurate translation start site annotation: an E. coli K-12 case study JOURNAL Unpublished REFERENCE 9 (residues 1 to 1526) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (08-MAR-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 10 (residues 1 to 1526) AUTHORS Blattner,F.R. and Plunkett,G. III. TITLE Direct Submission JOURNAL Submitted (30-JUL-2014) Laboratory of Genetics, University of Wisconsin, 425G Henry Mall, Madison, WI 53706-1580, USA REMARK Protein update by submitter REFERENCE 11 (residues 1 to 1526) AUTHORS Blattner,F.R. and Plunkett,G. III. TITLE Direct Submission JOURNAL Submitted (15-NOV-2013) Laboratory of Genetics, University of Wisconsin, 425G Henry Mall, Madison, WI 53706-1580, USA REMARK Protein update by submitter REFERENCE 12 (residues 1 to 1526) AUTHORS Blattner,F.R. and Plunkett,G. III. TITLE Direct Submission JOURNAL Submitted (26-SEP-2013) Laboratory of Genetics, University of Wisconsin, 425G Henry Mall, Madison, WI 53706-1580, USA REMARK Sequence update by submitter REFERENCE 13 (residues 1 to 1526) AUTHORS Rudd,K.E. TITLE Direct Submission JOURNAL Submitted (06-FEB-2013) Department of Biochemistry and Molecular Biology, University of Miami Miller School of Medicine, 118 Gautier Bldg., Miami, FL 33136, USA REMARK Sequence update by submitter REFERENCE 14 (residues 1 to 1526) AUTHORS Rudd,K.E. TITLE Direct Submission JOURNAL Submitted (24-APR-2007) Department of Biochemistry and Molecular Biology, University of Miami Miller School of Medicine, 118 Gautier Bldg., Miami, FL 33136, USA REMARK Annotation update from ecogene.org as a multi-database collaboration REFERENCE 15 (residues 1 to 1526) AUTHORS Plunkett,G. III. TITLE Direct Submission JOURNAL Submitted (07-FEB-2006) Laboratory of Genetics, University of Wisconsin, 425G Henry Mall, Madison, WI 53706-1580, USA REMARK Protein updates by submitter REFERENCE 16 (residues 1 to 1526) AUTHORS Plunkett,G. III. TITLE Direct Submission JOURNAL Submitted (10-JUN-2004) Laboratory of Genetics, University of Wisconsin, 425G Henry Mall, Madison, WI 53706-1580, USA REMARK Sequence update by submitter REFERENCE 17 (residues 1 to 1526) AUTHORS Plunkett,G. III. TITLE Direct Submission JOURNAL Submitted (13-OCT-1998) Laboratory of Genetics, University of Wisconsin, 425G Henry Mall, Madison, WI 53706-1580, USA REFERENCE 18 (residues 1 to 1526) AUTHORS Blattner,F.R. and Plunkett,G. III. TITLE Direct Submission JOURNAL Submitted (02-SEP-1997) Laboratory of Genetics, University of Wisconsin, 425G Henry Mall, Madison, WI 53706-1580, USA REFERENCE 19 (residues 1 to 1526) AUTHORS Blattner,F.R. and Plunkett,G. III. TITLE Direct Submission JOURNAL Submitted (16-JAN-1997) Laboratory of Genetics, University of Wisconsin, 425G Henry Mall, Madison, WI 53706-1580, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence is identical to AAC75695. On Mar 21, 2006 this sequence version replaced NP_417134.1. Changes to proteins and annotation made on March 7, 2022. Current U00096 annotation updates are derived from EcoCyc https://ecocyc.org/. Suggestions for updates can be sent to [email protected]. These updates are being generated from a collaboration that includes EcoCyc, the University of Wisconsin, UniProtKB/Swiss-Prot, and the National Center for Biotechnology Information (NCBI). COMPLETENESS: full length. Method: conceptual translation. FEATURES Location/Qualifiers source 1..1526 /organism="Escherichia coli str. K-12 substr. MG1655" /strain="K-12" /sub_strain="MG1655" /db_xref="taxon:511145" Protein 1..1526 /product="adhesin-like autotransporter YpjA" /calculated_mol_wt=157369 Region 61..>801 /region_name="auto_AIDA-I" /note="autotransporter adhesin AIDA-I; NF033176" /db_xref="CDD:380183" Region 821..872 /region_name="AIDA" /note="Adhesin of bacterial autotransporter system, probable stalk; pfam16168" /db_xref="CDD:406554" Region 892..946 /region_name="AIDA" /note="Adhesin of bacterial autotransporter system, probable stalk; pfam16168" /db_xref="CDD:406554" Region 931..1182 /region_name="PL1_Passenger_AT" /note="Pertactin-like passenger domains (virulence factors), C-terminal, subgroup 1, of autotransporter proteins of the type V secretion system of Gram-negative bacteria. This subgroup includes the passenger domains of Neisseria and Haemophilus IgA1 proteases; cd01343" /db_xref="CDD:238653" Region 1079..1526 /region_name="autotrans_barl" /note="outer membrane autotransporter barrel domain; TIGR01414" /db_xref="CDD:273608" CDS 1..1526 /gene="ypjA" /locus_tag="b2647" /gene_synonym="ECK2644" /coded_by="complement(NC_000913.3:2778146..2782726)" /transl_table=11 /db_xref="UniProtKB/Swiss-Prot:P52143" /db_xref="ASAP:ABE-0008713" /db_xref="ECOCYC:G7382" /db_xref="GeneID:948630" CONTIG join(WP_010723187.1:1..1526) ORIGIN 1 mnrtspyycr rsvlsllisa liyappgmaa fttnvigvvn detvdgnqkv dergttnnth 61 iinhgqqnvh ggvsngslie sggyqdigsh nnfvgqannt tinggrqsih dggistgtti 121 esgnqdvykg gisngttikg gasrveggsa ngilidggsq ivkvqghadg ttinksgsqd 181 vvqgslatnt tinggrqyve qstvetttik nggeqrvyes raldttiegg tqslnsksta 241 knthiysggt qivdntstsd vievysggvl dvrggtatnv tqhdgailkt ntngttvsgt 301 nsegafsihn hvadnvllen gghldinayg sanktiikdk gtmsvltnak adatridngg 361 vmdvagnatn tiinggtqni nnygiatgtn insgtqniks ggkadttiis sgsrqvvekd 421 gtaigsnisa ggslivytgg iahgvnqetg salvantgag tdiegynkls hftitggean 481 yvvlentgel tvvaktsakn ttidtggkli vqkeaktdst rlnnggvlev qdggeakhve 541 qqsggalias ttsgtliegt nsygdafyir nseaknvvle nagsltvvtg sravdtiina 601 ngkmdvygkd vgtvlnsagt qtiyasatsd kanikggkqt vyglateani esgeqivdgg 661 stekthingg tqtvqnygka intdivsglq qimangtaeg siinggsqvv negglaensv 721 lndggtldvr ekgsatgiqq ssqgalvatt ratrvtgtra dgvafsieqg aannillang 781 gvltvesdts sdktqvnmgg reivktkata tgttltggeq ivegvanett indggiqtvs 841 angeaiktki neggtltvnd ngkatdivqn sgaalqtsta ngieisgthq ygtfsisgnl 901 atnmllengg nllvlagtea rdstvgkgga mqnlgqdsat kvnsggqytl grskdefqal 961 araedlqvag gtaivyagtl adasvsgatg slslmtprdn vtpvklegav ritdsatltl 1021 gngvdttlad ltaasrgsvw lnsnnscagt snceyrvnsl llndgdvyls aqtaapattn 1081 giyntlttne lsgsgnfylh tnvagsrgdq lvvnnnatgn fkifvqdtgv spqsddamtl 1141 vktgggdasf tlgntggfvd lgtyeyvlks dgnsnwnltn dvkpnpdpip npkpdpkpdp 1201 kpdpnpkpdp tpdptptpvp ekritpstaa vlnmaatlpl vfdaelnsir erlnimkasp 1261 hnnnvwgaty ntrnnvttda gagfeqtltg mtvgidsrnd ipegittlga fmgyshshig 1321 fdrgghgsvg syslggyasw ehesgfyldg vvklnrfksn vagkmssgga angsyhsngl 1381 gghietgmrf tdgnwnltpy asltgftadn peyhlsngmk sksvdtrsiy relgatlsyn 1441 mrlgngmeve pwlkaavrke fvddnrvkvn sdgnfvnyls grrgiyqagi kasfsstlsg 1501 hlgvgyshsa gvespwnava gvnwsf