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LOCUS NP_313287 2104 aa linear CON 12-FEB-2021 ACCESSION NP_313287 VERSION NP_313287.1 DBLINK BioProject: PRJNA226 BioSample: SAMN01911278 DBSOURCE REFSEQ: accession NC_002695.2 KEYWORDS RefSeq. SOURCE Escherichia coli O157:H7 str. Sakai ORGANISM Escherichia coli O157:H7 str. Sakai Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia. REFERENCE 1 AUTHORS Hayashi,T., Makino,K., Ohnishi,M., Kurokawa,K., Ishii,K., Yokoyama,K., Han,C.G., Ohtsubo,E., Nakayama,K., Murata,T., Tanaka,M., Tobe,T., Iida,T., Takami,H., Honda,T., Sasakawa,C., Ogasawara,N., Yasunaga,T., Kuhara,S., Shiba,T., Hattori,M. and Shinagawa,H. TITLE Complete genome sequence of enterohemorrhagic Escherichia coli O157:H7 and genomic comparison with a laboratory strain K-12 JOURNAL DNA Res. 8 (1), 11-22 (2001) PUBMED 11258796 REMARK Erratum:[DNA Res 2001 Apr 27;8(2):96] REFERENCE 2 AUTHORS Yokoyama,K., Makino,K., Kubota,Y., Watanabe,M., Kimura,S., Yutsudo,C.H., Kurokawa,K., Ishii,K., Hattori,M., Tatsuno,I., Abe,H., Yoh,M., Iida,T., Ohnishi,M., Hayashi,T., Yasunaga,T., Honda,T., Sasakawa,C. and Shinagawa,H. TITLE Complete nucleotide sequence of the prophage VT1-Sakai carrying the Shiga toxin 1 genes of the enterohemorrhagic Escherichia coli O157:H7 strain derived from the Sakai outbreak JOURNAL Gene 258 (1-2), 127-139 (2000) PUBMED 11111050 REFERENCE 3 AUTHORS Ohnishi,M., Murata,T., Nakayama,K., Kuhara,S., Hattori,M., Kurokawa,K., Yasunaga,T., Yokoyama,K., Makino,K., Shinagawa,H. and Hayashi,T. TITLE Comparative analysis of the whole set of rRNA operons between an enterohemorrhagic Escherichia coli O157:H7 Sakai strain and an Escherichia coli K-12 strain MG1655 JOURNAL Syst. Appl. Microbiol. 23 (3), 315-324 (2000) PUBMED 11108008 REFERENCE 4 AUTHORS Makino,K., Yokoyama,K., Kubota,Y., Yutsudo,C.H., Kimura,S., Kurokawa,K., Ishii,K., Hattori,M., Tatsuno,I., Abe,H., Iida,T., Yamamoto,K., Onishi,M., Hayashi,T., Yasunaga,T., Honda,T., Sasakawa,C. and Shinagawa,H. TITLE Complete nucleotide sequence of the prophage VT2-Sakai carrying the verotoxin 2 genes of the enterohemorrhagic Escherichia coli O157:H7 derived from the Sakai outbreak JOURNAL Genes Genet. Syst. 74 (5), 227-239 (1999) PUBMED 10734605 REFERENCE 5 (residues 1 to 2104) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (15-AUG-2018) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 6 (residues 1 to 2104) AUTHORS Ogura,Y., Kurokawa,K., Hayashi,T. and Hattori,M. TITLE Direct Submission JOURNAL Submitted (26-JUN-2000) Contact:Yoshitoshi Ogura Kyushu University; 31-1 Maidashi Higashi-ku, Fukuoka, Fukuoka 812-8582, Japan COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence is identical to BAB38683. On May 10, 2018 this sequence version replased gi: 47118301 This update is obtained as follows: the Sakai genome was resequenced by illumina MiSeq and PacBio RS II sequencers and 78 sites of single base error, 11 sites of insertion (10 one-base insertions and a 141-base insertion) and 16 sites of deletion (14 one-base deletions, a three-base deletion and a six-base deletion) were corrected. Annotation was performed using DFAST auto-annotation system with manual curation. This work was done in collaboration with Tetsuya Hayashi, Makoto Ohnishi, Keisuke Nakayama (Miyazaki Medical College), Kozo Makino, Ken Kurokawa, Katsushi Yokoyama, Masashi Tanaka, Takeshi Honda, Teruo Yasunaga, Hideo Shinagawa (Osaka University), Takahiro Murata (Shinshu University), Chang-Gyun Han, Eiichi Ohtsubo, Toru Tobe, Chihiro Sasakawa (University of Tokyo), Hideto Takami (Japan Marine Science and Technology Center), Naotake Ogasawara (Nara Institute of Science and Technology), Satoru Kuhara (Kuyshu University), and supported by the Research for the Future Program of the Japan Society for the Promotion of Science. Method: conceptual translation. FEATURES Location/Qualifiers source 1..2104 /organism="Escherichia coli O157:H7 str. Sakai" /strain="Sakai" /sub_strain="RIMD 0509952" /serovar="O157:H7" /db_xref="taxon:386585" Protein 1..2104 /product="DEAD/DEAH box helicase" /calculated_mol_wt=236926 Region 93..312 /region_name="DEXHc_Hrq1-like" /note="DEAH-box helicase domain of Hrq1 and similar proteins; cd17923" /db_xref="CDD:350681" Site order(116..123,165,251..252) /site_type="other" /note="ATP binding site [chemical binding]" /db_xref="CDD:350681" Region 1061..1140 /region_name="HELICc" /note="helicase superfamily c-terminal domain; smart00490" /db_xref="CDD:197757" Site 1135 /site_type="other" /note="ATP binding site [chemical binding]" /db_xref="CDD:350184" Region 1611..1691 /region_name="MZB" /note="MrfA Zn-binding domain; pfam09369" /db_xref="CDD:462776" CDS 1..2104 /locus_tag="ECs_5260" /coded_by="NC_002695.2:5367370..5373684" /transl_table=11 /db_xref="GeneID:913735" CONTIG join(WP_000383109.1:1..2104) ORIGIN 1 mdvqqlhyap llnqlhqrav rsvvsqlalr skslthyles qyfqppgqeg slladpvfes 61 tfgwmpadet medlrdklis splvdalska pvpfrhqlta wrtiledkks llvssgtgsg 121 ktecfmvpvl edlirqqkst rqsltgtqai flyplnalin sqqerlrewt rgfkgkirfa 181 lyngetrhtk yeiqedqlkv peqalsreai yeappsimvt nttmleymli rrkdapiiek 241 sqgmlkyivl deahsyigsq aaelalllrr vmqafnvgpg tdkpvqiiat satigedspe 301 gnkelakfva dlagvterdv kvvrgyrqip rvseslirhe yptsltslks lspqdlyqql 361 chyrvaqqlr qalthpgrqa vrlsellnva rrtwpdinhr ellqlldlma rsregelaft 421 plrmhgfirt laglwacsnk qcshkaheln qsdwpfgqvw feqrqycdcg apvfevlrcs 481 gcgsaylsak eemrgdgtnw lvaqpaaaev defaldvdvy sededndeld nnsqfdrlia 541 sdgekyiisl eettagkids eaqkhyeinl lrpesrgegr nnsfacvccg dtqrknnplf 601 rplrlgapff lneiiptlle fsplpqtree qlgpfngrrl ltftdsrqgt arisarlqqd 661 adkatlralc yqelanitep saklspahca llekvisqfs vlplknsida lkkamaanee 721 lsptdiqalk iiepmvssls tehaeamqil qansgnqqkk tmswqtlseq lvgsvdladr 781 mrgsfkelsg ldltkqqfad fclysefgrr pknawtlesl glvaihypfi dkvttcpqdw 841 ktllpdpdkq laewrnllki tldffirens avfyeneqyp rwmgarfpvk mlqgpdkknk 901 gqkrdqlwpq irdrhynrvi klliavfpai qpeqahwksl vnhlmievwd airpclrqfe 961 sgyqldikqq aefyspkqvw rcpytrrald vtllgyspyl pgskeiapek avliempelp 1021 vrhwrlsggg eiareerlew lesnaliqha reeglwstrs drlalkdswy rleehsaqrt 1081 peqnqfnekq fksgkvnvln csttmemgvd iggmslvamn nvppapanyl qragragrrg 1141 esasaaitlc kntahgmevf kdplwafntt asaprvrfgs ssivqrhvna lvlglflrae 1201 vpdatklsck wffegdesqc lrflhwlnhq adqladklkr ltqgtvlmsl tatqlltrtq 1261 ammqqvdirw rsqlaillen iealkadnsa weetpagkai ayqlrdyrga ylfsklisea 1321 flpghgfpvg vvnfnyltad elekrraika tqadpnegge sfsrrieklp srdlptalre 1381 yapgadvvlg gkvyrssgim lgkvlasgqe lsgdhhipwf whcrkcgaga tstthpvecs 1441 hckadiqqld vkrylqpvgf atdiryqahn dvsmpaqlpw kdprvlvpss vwvslpdagl 1501 gryrfshsge lfhfsegefg hgyaiclscg raesqtqpqr tpenlknper enthyllrgg 1561 sndrqgsnkl chghvhkdlw lgyssrtdmv elqlnddngl lirdevaars lavalregla 1621 hklgientel gvttqqardi ngytgysifi ydnnaggagy avqlidhwad vfnyarklld 1681 cscdkfchhc llsydsqhyv nrldrhhalt lltnvrlqrl nlapeyqyfg dgsrvetnpl 1741 slriaqclns eiydscslvl agpqeqwdfa qwplfkellq fassggnvel lvatplanlt 1801 dssrhqlsal aampggrlqv ksiataqlmq gkgrwlaqvt regqsqqwaa ddsatvapge 1861 lwgqsasspv vtlkgtsgkt fsgqtlsaed llpalptgav rinlceqldg plegfgsrfw 1921 slvtqqhagw kqaftrhkei thveysdryl nspftarllg eiltelveqg maerasltvc 1981 vkkldynsrq hdalynawln eedrqqvvtt lleegylgpa wpgaiswltg dnqstehgre 2041 ltvtfsdgsq hyvlldmgls ywrciedtff dfalrvpqqv erlantrara vapgndlrsy 2101 iiag