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LOCUS NP_312891 1394 aa linear CON 12-FEB-2021 Sakai]. ACCESSION NP_312891 VERSION NP_312891.1 DBLINK BioProject: PRJNA226 BioSample: SAMN01911278 DBSOURCE REFSEQ: accession NC_002695.2 KEYWORDS RefSeq. SOURCE Escherichia coli O157:H7 str. Sakai ORGANISM Escherichia coli O157:H7 str. Sakai Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia. REFERENCE 1 AUTHORS Hayashi,T., Makino,K., Ohnishi,M., Kurokawa,K., Ishii,K., Yokoyama,K., Han,C.G., Ohtsubo,E., Nakayama,K., Murata,T., Tanaka,M., Tobe,T., Iida,T., Takami,H., Honda,T., Sasakawa,C., Ogasawara,N., Yasunaga,T., Kuhara,S., Shiba,T., Hattori,M. and Shinagawa,H. TITLE Complete genome sequence of enterohemorrhagic Escherichia coli O157:H7 and genomic comparison with a laboratory strain K-12 JOURNAL DNA Res. 8 (1), 11-22 (2001) PUBMED 11258796 REMARK Erratum:[DNA Res 2001 Apr 27;8(2):96] REFERENCE 2 AUTHORS Yokoyama,K., Makino,K., Kubota,Y., Watanabe,M., Kimura,S., Yutsudo,C.H., Kurokawa,K., Ishii,K., Hattori,M., Tatsuno,I., Abe,H., Yoh,M., Iida,T., Ohnishi,M., Hayashi,T., Yasunaga,T., Honda,T., Sasakawa,C. and Shinagawa,H. TITLE Complete nucleotide sequence of the prophage VT1-Sakai carrying the Shiga toxin 1 genes of the enterohemorrhagic Escherichia coli O157:H7 strain derived from the Sakai outbreak JOURNAL Gene 258 (1-2), 127-139 (2000) PUBMED 11111050 REFERENCE 3 AUTHORS Ohnishi,M., Murata,T., Nakayama,K., Kuhara,S., Hattori,M., Kurokawa,K., Yasunaga,T., Yokoyama,K., Makino,K., Shinagawa,H. and Hayashi,T. TITLE Comparative analysis of the whole set of rRNA operons between an enterohemorrhagic Escherichia coli O157:H7 Sakai strain and an Escherichia coli K-12 strain MG1655 JOURNAL Syst. Appl. Microbiol. 23 (3), 315-324 (2000) PUBMED 11108008 REFERENCE 4 AUTHORS Makino,K., Yokoyama,K., Kubota,Y., Yutsudo,C.H., Kimura,S., Kurokawa,K., Ishii,K., Hattori,M., Tatsuno,I., Abe,H., Iida,T., Yamamoto,K., Onishi,M., Hayashi,T., Yasunaga,T., Honda,T., Sasakawa,C. and Shinagawa,H. TITLE Complete nucleotide sequence of the prophage VT2-Sakai carrying the verotoxin 2 genes of the enterohemorrhagic Escherichia coli O157:H7 derived from the Sakai outbreak JOURNAL Genes Genet. Syst. 74 (5), 227-239 (1999) PUBMED 10734605 REFERENCE 5 (residues 1 to 1394) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (15-AUG-2018) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 6 (residues 1 to 1394) AUTHORS Ogura,Y., Kurokawa,K., Hayashi,T. and Hattori,M. TITLE Direct Submission JOURNAL Submitted (26-JUN-2000) Contact:Yoshitoshi Ogura Kyushu University; 31-1 Maidashi Higashi-ku, Fukuoka, Fukuoka 812-8582, Japan COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence is identical to BAB38287. On May 10, 2018 this sequence version replased gi: 47118301 This update is obtained as follows: the Sakai genome was resequenced by illumina MiSeq and PacBio RS II sequencers and 78 sites of single base error, 11 sites of insertion (10 one-base insertions and a 141-base insertion) and 16 sites of deletion (14 one-base deletions, a three-base deletion and a six-base deletion) were corrected. Annotation was performed using DFAST auto-annotation system with manual curation. This work was done in collaboration with Tetsuya Hayashi, Makoto Ohnishi, Keisuke Nakayama (Miyazaki Medical College), Kozo Makino, Ken Kurokawa, Katsushi Yokoyama, Masashi Tanaka, Takeshi Honda, Teruo Yasunaga, Hideo Shinagawa (Osaka University), Takahiro Murata (Shinshu University), Chang-Gyun Han, Eiichi Ohtsubo, Toru Tobe, Chihiro Sasakawa (University of Tokyo), Hideto Takami (Japan Marine Science and Technology Center), Naotake Ogasawara (Nara Institute of Science and Technology), Satoru Kuhara (Kuyshu University), and supported by the Research for the Future Program of the Japan Society for the Promotion of Science. Method: conceptual translation. FEATURES Location/Qualifiers source 1..1394 /organism="Escherichia coli O157:H7 str. Sakai" /strain="Sakai" /sub_strain="RIMD 0509952" /serovar="O157:H7" /db_xref="taxon:386585" Protein 1..1394 /product="type IV secretion protein Rhs" /calculated_mol_wt=157718 Region 1..1247 /region_name="RHS_core" /note="RHS element core protein; NF041261" /db_xref="CDD:469161" Region 1262..1380 /region_name="DUF4329" /note="Domain of unknown function (DUF4329); pfam14220" /db_xref="CDD:433783" CDS 1..1394 /gene="rhsD" /locus_tag="ECs_4864" /coded_by="NC_002695.2:4929004..4933188" /transl_table=11 /db_xref="GeneID:915028" CONTIG join(WP_000014969.1:1..1394) ORIGIN 1 msgkpaarqg dmtqyggsiv qgsagvriga ptgvacsvcp ggvtfghpvn pllgakvlpg 61 etdialpgpl pfilsrtyss yrtktpapvg slgpgwkmpa dirlqlrdnt lilsdnggrs 121 lyfehlfpge dgysrseslw lvrggvakld eghrlaalwq alpeelrlsp hrylatnspq 181 gpwwllgwce rvpeadevlp aplppyrvlt glvdrfgrtq tfhreaagef sgeitgvtdg 241 agrhfrlvlt tqaqraeear qqaisggtep safpdtlpgy teygrdngir lsavwlthdp 301 eypenlpaap lvrygwtprg elavvydrsg kqvrsftydd kyrgrmvahr htgrpeiryr 361 ydsdgrvteq lnpaglsyty qyekdritit dslnrrevlh tqgegglkrv vkkehadgsv 421 tqsqfdavgr lraqtdaagr tteyspdvvt glitrittpd grasafyynh hsqltsatgp 481 dgleirreyd ewgrliqeta pdgditryry dnphsdlpca tedatgsrkt mtwsrygqll 541 sftdcsgyvt rydhdrfgqm tavhreegls qyraydsrgq liavkdtqgh etryeynaag 601 dlttviapdg srngtqydaw gkaicttqgg ltrsmeydaa grvirltsen gshttfrydv 661 ldrliqetgf dgrtqryhhd ltgklirsed eglvthwhyd eadrlthrtv kgetaerwqy 721 dergwltdis hiseghrvtv hygydekgrl tgerqtvhhp qteallwqhe trhaynaqgl 781 anrcipdslp avewltygsg wlagmklgdt plvdftrdrl hrktlrrfgr yelttaytpa 841 gqlqsqhlns lqydrdytwn dngeliriss prqtrsysys dsgrltgvht taanldirip 901 yatdpagnrl pdpelhpdst lsmwpdnria rdahylyryd rhgrltektd lipegvirtd 961 derthryhyd sqhrlvhytr tqyeeplves rylydplgrr vakrvwrrer dltgwmslsr 1021 kpqvtwygwd gdrlttiqnd rtriqtiyqp gsftplirve tatgelaktq rrsladalqq 1081 sggedggsvv fppvlvqmld rleseiladr vseesrrwla scgltvaqmq sqmdpvytpa 1141 rkihlyhcdh rglplalisk egatewcaey dewgnllnee nphqlqqlir lpgqqydees 1201 glyynrhryy dplqgryitq dpiglkggwn lytyplspvn gmdplglyef kskniddigi 1261 falamcnges inenkeyggl ickkqgeyfp mnpissndnd svdlrnikcp egservgdyh 1321 thgfysddkg nkvtkendvy dslnfsskdl tnsymngmgk kecssylgtp nntylkynpk 1381 akgngvtiir qgsn