Unfortunately due to lack of commercial feasibility, the SkyBLAST service has been suspended from December 1st, 2025.
All subscriptions for paid accounts have been paused. For further information or enquiries, please email [email protected]
LOCUS NP_312145 1266 aa linear CON 12-FEB-2021 Sakai]. ACCESSION NP_312145 VERSION NP_312145.1 DBLINK BioProject: PRJNA226 BioSample: SAMN01911278 DBSOURCE REFSEQ: accession NC_002695.2 KEYWORDS RefSeq. SOURCE Escherichia coli O157:H7 str. Sakai ORGANISM Escherichia coli O157:H7 str. Sakai Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia. REFERENCE 1 AUTHORS Hayashi,T., Makino,K., Ohnishi,M., Kurokawa,K., Ishii,K., Yokoyama,K., Han,C.G., Ohtsubo,E., Nakayama,K., Murata,T., Tanaka,M., Tobe,T., Iida,T., Takami,H., Honda,T., Sasakawa,C., Ogasawara,N., Yasunaga,T., Kuhara,S., Shiba,T., Hattori,M. and Shinagawa,H. TITLE Complete genome sequence of enterohemorrhagic Escherichia coli O157:H7 and genomic comparison with a laboratory strain K-12 JOURNAL DNA Res. 8 (1), 11-22 (2001) PUBMED 11258796 REMARK Erratum:[DNA Res 2001 Apr 27;8(2):96] REFERENCE 2 AUTHORS Yokoyama,K., Makino,K., Kubota,Y., Watanabe,M., Kimura,S., Yutsudo,C.H., Kurokawa,K., Ishii,K., Hattori,M., Tatsuno,I., Abe,H., Yoh,M., Iida,T., Ohnishi,M., Hayashi,T., Yasunaga,T., Honda,T., Sasakawa,C. and Shinagawa,H. TITLE Complete nucleotide sequence of the prophage VT1-Sakai carrying the Shiga toxin 1 genes of the enterohemorrhagic Escherichia coli O157:H7 strain derived from the Sakai outbreak JOURNAL Gene 258 (1-2), 127-139 (2000) PUBMED 11111050 REFERENCE 3 AUTHORS Ohnishi,M., Murata,T., Nakayama,K., Kuhara,S., Hattori,M., Kurokawa,K., Yasunaga,T., Yokoyama,K., Makino,K., Shinagawa,H. and Hayashi,T. TITLE Comparative analysis of the whole set of rRNA operons between an enterohemorrhagic Escherichia coli O157:H7 Sakai strain and an Escherichia coli K-12 strain MG1655 JOURNAL Syst. Appl. Microbiol. 23 (3), 315-324 (2000) PUBMED 11108008 REFERENCE 4 AUTHORS Makino,K., Yokoyama,K., Kubota,Y., Yutsudo,C.H., Kimura,S., Kurokawa,K., Ishii,K., Hattori,M., Tatsuno,I., Abe,H., Iida,T., Yamamoto,K., Onishi,M., Hayashi,T., Yasunaga,T., Honda,T., Sasakawa,C. and Shinagawa,H. TITLE Complete nucleotide sequence of the prophage VT2-Sakai carrying the verotoxin 2 genes of the enterohemorrhagic Escherichia coli O157:H7 derived from the Sakai outbreak JOURNAL Genes Genet. Syst. 74 (5), 227-239 (1999) PUBMED 10734605 REFERENCE 5 (residues 1 to 1266) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (15-AUG-2018) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 6 (residues 1 to 1266) AUTHORS Ogura,Y., Kurokawa,K., Hayashi,T. and Hattori,M. TITLE Direct Submission JOURNAL Submitted (26-JUN-2000) Contact:Yoshitoshi Ogura Kyushu University; 31-1 Maidashi Higashi-ku, Fukuoka, Fukuoka 812-8582, Japan COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence is identical to BAB37541. On May 10, 2018 this sequence version replased gi: 47118301 This update is obtained as follows: the Sakai genome was resequenced by illumina MiSeq and PacBio RS II sequencers and 78 sites of single base error, 11 sites of insertion (10 one-base insertions and a 141-base insertion) and 16 sites of deletion (14 one-base deletions, a three-base deletion and a six-base deletion) were corrected. Annotation was performed using DFAST auto-annotation system with manual curation. This work was done in collaboration with Tetsuya Hayashi, Makoto Ohnishi, Keisuke Nakayama (Miyazaki Medical College), Kozo Makino, Ken Kurokawa, Katsushi Yokoyama, Masashi Tanaka, Takeshi Honda, Teruo Yasunaga, Hideo Shinagawa (Osaka University), Takahiro Murata (Shinshu University), Chang-Gyun Han, Eiichi Ohtsubo, Toru Tobe, Chihiro Sasakawa (University of Tokyo), Hideto Takami (Japan Marine Science and Technology Center), Naotake Ogasawara (Nara Institute of Science and Technology), Satoru Kuhara (Kuyshu University), and supported by the Research for the Future Program of the Japan Society for the Promotion of Science. Method: conceptual translation. FEATURES Location/Qualifiers source 1..1266 /organism="Escherichia coli O157:H7 str. Sakai" /strain="Sakai" /sub_strain="RIMD 0509952" /serovar="O157:H7" /db_xref="taxon:386585" Protein 1..1266 /product="hypothetical protein" /calculated_mol_wt=138763 Region 1..433 /region_name="AsmA" /note="Uncharacterized conserved protein AsmA involved in outer membrane biogenesis [Cell wall/membrane/envelope biogenesis]; COG2982" /db_xref="CDD:442221" Region 245..1266 /region_name="PRK10899" /note="AsmA2 domain-containing protein" /db_xref="CDD:236789" CDS 1..1266 /gene="yhdP" /locus_tag="ECs_4118" /coded_by="complement(NC_002695.2:4127546..4131346)" /transl_table=11 /db_xref="GeneID:916035" CONTIG join(WP_001253587.1:1..1266) ORIGIN 1 mrrlpgilll tgaalvviaa llvsglrial phldawrpei lnkiesatgm pveasqlsas 61 wqnfgptlea hdiraelkdg gefsvkrvtl aldvwqsllh mrwqfrdltf wqlrfrtntp 121 itsggsddsl eashisdlfl rqfdhfdlrd sevsfltpsg qraelaipql twlndprrhr 181 aeglvslssl tgqhgvmqvr mdlrddegll sngrvwlqad didlkpwlgk wmqdnialet 241 aqfslegwmt idkgdvtggd vwlkqggasw lgekethtls vdnltahitr enpgwqfsip 301 dtritmdgkp wpsgaltlaw ipeqdvggkd nkrsdelrir asnlelagle girplaakls 361 palgdvwrst qpsgkintla ldiplqaadk trfqaswsdl awkqwkllpg aehfsgtlsg 421 svenglltas mkqakmpyet vfrapleiad gqatiswlnn dkgfqldgrn idvkakavha 481 rggfrylqpa ndepwlgila gistddgsqa wryfpenlmg kdlvdylsga iqggeadnat 541 lvyggnpqlf pykhnegqfe vlvplrnakf afqpdwpalt nlgieldfin dglwmktdgv 601 nlggvrasnl tavipdyske kllidadikg pgkavgpyfd etplkdslga tlqelqldgd 661 vnarlhldip lngelvtakg evtlrnnslf ikpldstlkn lsgkfsfing dlqsepltas 721 wfnqplnvdf stkegakayq vavnlngnwq paktgvlpaa vnealsgsva wdgkvgivlp 781 yhagatynve lngdlknvss hlpsplakpa geplpvnvkv dgnlnsfelt gqagadnhfn 841 srwllgqklt ldraiwaads ktlpplpeqs gvelnmppmn gaewlalfqk gaaesvggaa 901 sfpqhitlrt pmlslgnqqw nnlsivsqpt angtqveaqg reinatlamr nnapwlanik 961 ylyynpsvak trgdstpssp fptterinfr gwsdaqirca ecwfwgqkfg ridsditisg 1021 ntltltngli dtgfsrltad gewinnpgne rtslkgklrg qkidaaaeff gvttpirqss 1081 fnvdydlhwr kapwqpdeat lngiihtqlg kgeiteintg hagqllrlls vdalmrklrf 1141 dfrdtfgegf yfdsirstaw ikdgvmhtdd tlvdgleadi amkgsvnlvr rdlnmeavva 1201 peisatvgva aafavnpivg aavfaaskvl gplwskvsil ryhisgpldd pqinevlrqp 1261 rkekaq