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LOCUS NP_311442 1093 aa linear CON 12-FEB-2021 Sakai]. ACCESSION NP_311442 VERSION NP_311442.2 DBLINK BioProject: PRJNA226 BioSample: SAMN01911278 DBSOURCE REFSEQ: accession NC_002695.2 KEYWORDS RefSeq. SOURCE Escherichia coli O157:H7 str. Sakai ORGANISM Escherichia coli O157:H7 str. Sakai Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia. REFERENCE 1 AUTHORS Hayashi,T., Makino,K., Ohnishi,M., Kurokawa,K., Ishii,K., Yokoyama,K., Han,C.G., Ohtsubo,E., Nakayama,K., Murata,T., Tanaka,M., Tobe,T., Iida,T., Takami,H., Honda,T., Sasakawa,C., Ogasawara,N., Yasunaga,T., Kuhara,S., Shiba,T., Hattori,M. and Shinagawa,H. TITLE Complete genome sequence of enterohemorrhagic Escherichia coli O157:H7 and genomic comparison with a laboratory strain K-12 JOURNAL DNA Res. 8 (1), 11-22 (2001) PUBMED 11258796 REMARK Erratum:[DNA Res 2001 Apr 27;8(2):96] REFERENCE 2 AUTHORS Yokoyama,K., Makino,K., Kubota,Y., Watanabe,M., Kimura,S., Yutsudo,C.H., Kurokawa,K., Ishii,K., Hattori,M., Tatsuno,I., Abe,H., Yoh,M., Iida,T., Ohnishi,M., Hayashi,T., Yasunaga,T., Honda,T., Sasakawa,C. and Shinagawa,H. TITLE Complete nucleotide sequence of the prophage VT1-Sakai carrying the Shiga toxin 1 genes of the enterohemorrhagic Escherichia coli O157:H7 strain derived from the Sakai outbreak JOURNAL Gene 258 (1-2), 127-139 (2000) PUBMED 11111050 REFERENCE 3 AUTHORS Ohnishi,M., Murata,T., Nakayama,K., Kuhara,S., Hattori,M., Kurokawa,K., Yasunaga,T., Yokoyama,K., Makino,K., Shinagawa,H. and Hayashi,T. TITLE Comparative analysis of the whole set of rRNA operons between an enterohemorrhagic Escherichia coli O157:H7 Sakai strain and an Escherichia coli K-12 strain MG1655 JOURNAL Syst. Appl. Microbiol. 23 (3), 315-324 (2000) PUBMED 11108008 REFERENCE 4 AUTHORS Makino,K., Yokoyama,K., Kubota,Y., Yutsudo,C.H., Kimura,S., Kurokawa,K., Ishii,K., Hattori,M., Tatsuno,I., Abe,H., Iida,T., Yamamoto,K., Onishi,M., Hayashi,T., Yasunaga,T., Honda,T., Sasakawa,C. and Shinagawa,H. TITLE Complete nucleotide sequence of the prophage VT2-Sakai carrying the verotoxin 2 genes of the enterohemorrhagic Escherichia coli O157:H7 derived from the Sakai outbreak JOURNAL Genes Genet. Syst. 74 (5), 227-239 (1999) PUBMED 10734605 REFERENCE 5 (residues 1 to 1093) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (15-AUG-2018) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 6 (residues 1 to 1093) AUTHORS Ogura,Y., Kurokawa,K., Hayashi,T. and Hattori,M. TITLE Direct Submission JOURNAL Submitted (26-JUN-2000) Contact:Yoshitoshi Ogura Kyushu University; 31-1 Maidashi Higashi-ku, Fukuoka, Fukuoka 812-8582, Japan COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence is identical to BAB36838. On Jan 24, 2017 this sequence version replaced NP_311442.1. On May 10, 2018 this sequence version replased gi: 47118301 This update is obtained as follows: the Sakai genome was resequenced by illumina MiSeq and PacBio RS II sequencers and 78 sites of single base error, 11 sites of insertion (10 one-base insertions and a 141-base insertion) and 16 sites of deletion (14 one-base deletions, a three-base deletion and a six-base deletion) were corrected. Annotation was performed using DFAST auto-annotation system with manual curation. This work was done in collaboration with Tetsuya Hayashi, Makoto Ohnishi, Keisuke Nakayama (Miyazaki Medical College), Kozo Makino, Ken Kurokawa, Katsushi Yokoyama, Masashi Tanaka, Takeshi Honda, Teruo Yasunaga, Hideo Shinagawa (Osaka University), Takahiro Murata (Shinshu University), Chang-Gyun Han, Eiichi Ohtsubo, Toru Tobe, Chihiro Sasakawa (University of Tokyo), Hideto Takami (Japan Marine Science and Technology Center), Naotake Ogasawara (Nara Institute of Science and Technology), Satoru Kuhara (Kuyshu University), and supported by the Research for the Future Program of the Japan Society for the Promotion of Science. Method: conceptual translation. FEATURES Location/Qualifiers source 1..1093 /organism="Escherichia coli O157:H7 str. Sakai" /strain="Sakai" /sub_strain="RIMD 0509952" /serovar="O157:H7" /db_xref="taxon:386585" Protein 1..1093 /product="hypothetical protein" /calculated_mol_wt=123635 Region 40..343 /region_name="DUF5107" /note="Domain of unknown function (DUF5107); pfam17128" /db_xref="CDD:407262" Region 482..842 /region_name="LapB" /note="Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis]; COG2956" /db_xref="CDD:442196" Region 495..523 /region_name="TPR repeat" /note="TPR repeat [structural motif]" /db_xref="CDD:276809" Site order(496,499..500,503..504,506,536,539..540,543..544, 546..547,570,573..574,577..578,581) /site_type="other" /note="putative protein binding surface [polypeptide binding]" /db_xref="CDD:276809" Region 534..564 /region_name="TPR repeat" /note="TPR repeat [structural motif]" /db_xref="CDD:276809" Region 569..597 /region_name="TPR repeat" /note="TPR repeat [structural motif]" /db_xref="CDD:276809" Region 603..631 /region_name="TPR repeat" /note="TPR repeat [structural motif]" /db_xref="CDD:276809" Region 746..772 /region_name="TPR repeat" /note="TPR repeat [structural motif]" /db_xref="CDD:276809" Region 777..808 /region_name="TPR repeat" /note="TPR repeat [structural motif]" /db_xref="CDD:276809" CDS 1..1093 /gene="yphG" /locus_tag="ECs_3415" /coded_by="complement(NC_002695.2:3400100..3403381)" /transl_table=11 /db_xref="GeneID:914914" CONTIG join(WP_001301590.1:1..1093) ORIGIN 1 mtpvkvwqer veiptyetgp qdihpmflen rvyqgssgav ypygvtdtls eqktlkswqa 61 vwlendyikv milpelggrv hrawdkvkqr dfvyhnevik palvgllgpw isggiefnwp 121 qhhrpttfmp vdftleahed gaqtvwvget epmhglqvmt gftlrpdraa leiasrvyng 181 natprhflww anpavkggeg hqsvfppdvt avfdhgkrav safpiatgty ykvdysagvd 241 isryknvpvp tsymaeksqy dfvgawchde dggllhvanh hiapgkkqws wghsefgqaw 301 dksltdnngp yielmtgifa dnqpdftrld ayeekrfeqf flpyhslgmv qnasrdavik 361 lqrsergiew glyaisplng yrlaireigk cdallddava ltpataiqgv lhginperlt 421 ielsdadgni vlsyqehqpq elplpdvaka plsaqditst deawfigqhl eqyhhasrsp 481 fdyylrgval dpldyrcnla lamleynrad fpqavayatq alkrahalnk npqcgqasli 541 rasayerqgq yqqaeedfwr avwsgnskag gyyglarlaa rngnfdagld fcqqslracp 601 inqevlclhn lllvlsgrqd narlqrekll rdyplnatlw clnwfdgrse salaqwrglc 661 qgrdvnalmt agqlinwgmp tlaaemlnal dcqrtlplyl qasllpkaer gelvakaidv 721 fpqfvrfpnt leevaalesi eecwfarhll acfyynkrsy neaialwqrc vemspefadg 781 wrglaihawn kqhdyelaar yldnayqlap qdarllferd lldklsgttp ekrlarlenn 841 leialkrddm taellnlwhl tgqadkaadi latrkfhpwe ggegkvtsqf ilnqllrawq 901 hldarepqqa sellhaalhy penlsegrlp gqtdndiwfw qaicakaqgd eteatrclhl 961 aatgdrtini hsyyndqpvd ylfwqgmalr llgeqhtaqq lfsemkqwaq emaktsiead 1021 ffavsqpdll slygdlqqqh kekclmvaml aaaglgeiaq yesaraelta inpawpkaal 1081 fttvmpfifn yvh