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LOCUS NP_310144 1343 aa linear CON 12-FEB-2021 ACCESSION NP_310144 VERSION NP_310144.1 DBLINK BioProject: PRJNA226 BioSample: SAMN01911278 DBSOURCE REFSEQ: accession NC_002695.2 KEYWORDS RefSeq. SOURCE Escherichia coli O157:H7 str. Sakai ORGANISM Escherichia coli O157:H7 str. Sakai Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia. REFERENCE 1 AUTHORS Hayashi,T., Makino,K., Ohnishi,M., Kurokawa,K., Ishii,K., Yokoyama,K., Han,C.G., Ohtsubo,E., Nakayama,K., Murata,T., Tanaka,M., Tobe,T., Iida,T., Takami,H., Honda,T., Sasakawa,C., Ogasawara,N., Yasunaga,T., Kuhara,S., Shiba,T., Hattori,M. and Shinagawa,H. TITLE Complete genome sequence of enterohemorrhagic Escherichia coli O157:H7 and genomic comparison with a laboratory strain K-12 JOURNAL DNA Res. 8 (1), 11-22 (2001) PUBMED 11258796 REMARK Erratum:[DNA Res 2001 Apr 27;8(2):96] REFERENCE 2 AUTHORS Yokoyama,K., Makino,K., Kubota,Y., Watanabe,M., Kimura,S., Yutsudo,C.H., Kurokawa,K., Ishii,K., Hattori,M., Tatsuno,I., Abe,H., Yoh,M., Iida,T., Ohnishi,M., Hayashi,T., Yasunaga,T., Honda,T., Sasakawa,C. and Shinagawa,H. TITLE Complete nucleotide sequence of the prophage VT1-Sakai carrying the Shiga toxin 1 genes of the enterohemorrhagic Escherichia coli O157:H7 strain derived from the Sakai outbreak JOURNAL Gene 258 (1-2), 127-139 (2000) PUBMED 11111050 REFERENCE 3 AUTHORS Ohnishi,M., Murata,T., Nakayama,K., Kuhara,S., Hattori,M., Kurokawa,K., Yasunaga,T., Yokoyama,K., Makino,K., Shinagawa,H. and Hayashi,T. TITLE Comparative analysis of the whole set of rRNA operons between an enterohemorrhagic Escherichia coli O157:H7 Sakai strain and an Escherichia coli K-12 strain MG1655 JOURNAL Syst. Appl. Microbiol. 23 (3), 315-324 (2000) PUBMED 11108008 REFERENCE 4 AUTHORS Makino,K., Yokoyama,K., Kubota,Y., Yutsudo,C.H., Kimura,S., Kurokawa,K., Ishii,K., Hattori,M., Tatsuno,I., Abe,H., Iida,T., Yamamoto,K., Onishi,M., Hayashi,T., Yasunaga,T., Honda,T., Sasakawa,C. and Shinagawa,H. TITLE Complete nucleotide sequence of the prophage VT2-Sakai carrying the verotoxin 2 genes of the enterohemorrhagic Escherichia coli O157:H7 derived from the Sakai outbreak JOURNAL Genes Genet. Syst. 74 (5), 227-239 (1999) PUBMED 10734605 REFERENCE 5 (residues 1 to 1343) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (15-AUG-2018) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 6 (residues 1 to 1343) AUTHORS Ogura,Y., Kurokawa,K., Hayashi,T. and Hattori,M. TITLE Direct Submission JOURNAL Submitted (26-JUN-2000) Contact:Yoshitoshi Ogura Kyushu University; 31-1 Maidashi Higashi-ku, Fukuoka, Fukuoka 812-8582, Japan COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence is identical to BAB35540. On May 10, 2018 this sequence version replased gi: 47118301 This update is obtained as follows: the Sakai genome was resequenced by illumina MiSeq and PacBio RS II sequencers and 78 sites of single base error, 11 sites of insertion (10 one-base insertions and a 141-base insertion) and 16 sites of deletion (14 one-base deletions, a three-base deletion and a six-base deletion) were corrected. Annotation was performed using DFAST auto-annotation system with manual curation. This work was done in collaboration with Tetsuya Hayashi, Makoto Ohnishi, Keisuke Nakayama (Miyazaki Medical College), Kozo Makino, Ken Kurokawa, Katsushi Yokoyama, Masashi Tanaka, Takeshi Honda, Teruo Yasunaga, Hideo Shinagawa (Osaka University), Takahiro Murata (Shinshu University), Chang-Gyun Han, Eiichi Ohtsubo, Toru Tobe, Chihiro Sasakawa (University of Tokyo), Hideto Takami (Japan Marine Science and Technology Center), Naotake Ogasawara (Nara Institute of Science and Technology), Satoru Kuhara (Kuyshu University), and supported by the Research for the Future Program of the Japan Society for the Promotion of Science. Method: conceptual translation. FEATURES Location/Qualifiers source 1..1343 /organism="Escherichia coli O157:H7 str. Sakai" /strain="Sakai" /sub_strain="RIMD 0509952" /serovar="O157:H7" /db_xref="taxon:386585" Protein 1..1343 /product="lipoprotein" /calculated_mol_wt=138438 Region 1..>1330 /region_name="PRK14849" /note="autotransporter barrel domain-containing lipoprotein" /db_xref="CDD:184851" CDS 1..1343 /gene="ydeK" /locus_tag="ECs_2117" /coded_by="complement(NC_002695.2:2118114..2122145)" /transl_table=11 /db_xref="GeneID:917316" CONTIG join(WP_010917813.1:1..1343) ORIGIN 1 mnriyrviwn ctlqvfqacs eltrrvgkts tvnlrkssgl ttkfsrltlg vllalsgsvs 61 gaslevdngq itnidtdvay daylvgwygt gvlnilaggn aslttittsv iggnedsegt 121 vnvlggtwrl ydsgnnarpl nvgqsgtgtl nikqkghvdg gylrlgtqaa gvgtvnvege 181 dsvlttelfe igsygtgsln itdkgyvtss ivailgyqan sngkvvvekg gewliknnds 241 siefqignqg tgeatiregg litaentiig gnatgvgtln vqdqdsvitv rrlyngyfgn 301 gavnisnngl innkeyslvg vqdgshgvvn vtdkghwnfl gtgeafryiy igdagdgeln 361 vsregkvdsg iitagmketg tgnltvkdkn svitnlgtnl gydghgemni sneglvvsng 421 gsslgygetg vgkvsittgg iwevnknvyt tigvagvgnl nisdggkfvs qnitflgdka 481 sgigtlnlmd atssfdtvgi nvgnfgsgiv nvsngatlns tgygfiggna sgkgivnist 541 dslwnlktss tnaqllqvgv lgtgelnitt ggivkardtq ialndkskgd vrvdgqnsll 601 etfnmyvgts gtgtltltns gtlnveggev ylgvfepavg tlnigaahge aaadagfitn 661 atkvefgsge gvfvfnhtnn sdagyqvdml itgddkdgkv ihdaghtvfn agntysgktl 721 vndglltias htadgvtgmg ssevtiaspg tldilastns agdytltnal kgdglmrvql 781 sssdkmfgft hatgtefagv aqlkdstftl erdntaalth amlqsdient tsvnvgeqsi 841 gglamnggtl ifdtdipaat laegyisvdt lvvgasdytw kgrnyqvngt gdvligvpkp 901 wndpmannpl ttlnllehdd nhvgvqlvka qtvigsggsl tlrdlqgdev eadktlhiaq 961 ngtvvaegdy gfrlttapgd glyvnyglka lnihggqklt laehggayga tadmsakigg 1021 egdlaintvr qvslsngqnd yqgatyvqmg tlrtdadgal gntrelnisn aaivdlngst 1081 qtvetftgqm gstvlfkegs ltvnkggisq geltgggnln vtggtlaveg lnarynalts 1141 vspnaevsld ntqglgrgni andglltlkn vtgelrnsis gkgivsatar tdveldgdns 1201 rfvgqfnidt gsalsvneqk nlgdasvinn glltisters wamthsisgs gdltklgtgi 1261 ltlnndssay qgttdivgge iafgsdsain tasqhinihn sgvmsgnvtt agdvnvmsgg 1321 tlrvakttig esaatwrmaa rfk