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LOCUS NP_310088 1400 aa linear CON 12-FEB-2021 Sakai]. ACCESSION NP_310088 VERSION NP_310088.2 DBLINK BioProject: PRJNA226 BioSample: SAMN01911278 DBSOURCE REFSEQ: accession NC_002695.2 KEYWORDS RefSeq. SOURCE Escherichia coli O157:H7 str. Sakai ORGANISM Escherichia coli O157:H7 str. Sakai Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia. REFERENCE 1 AUTHORS Hayashi,T., Makino,K., Ohnishi,M., Kurokawa,K., Ishii,K., Yokoyama,K., Han,C.G., Ohtsubo,E., Nakayama,K., Murata,T., Tanaka,M., Tobe,T., Iida,T., Takami,H., Honda,T., Sasakawa,C., Ogasawara,N., Yasunaga,T., Kuhara,S., Shiba,T., Hattori,M. and Shinagawa,H. TITLE Complete genome sequence of enterohemorrhagic Escherichia coli O157:H7 and genomic comparison with a laboratory strain K-12 JOURNAL DNA Res. 8 (1), 11-22 (2001) PUBMED 11258796 REMARK Erratum:[DNA Res 2001 Apr 27;8(2):96] REFERENCE 2 AUTHORS Yokoyama,K., Makino,K., Kubota,Y., Watanabe,M., Kimura,S., Yutsudo,C.H., Kurokawa,K., Ishii,K., Hattori,M., Tatsuno,I., Abe,H., Yoh,M., Iida,T., Ohnishi,M., Hayashi,T., Yasunaga,T., Honda,T., Sasakawa,C. and Shinagawa,H. TITLE Complete nucleotide sequence of the prophage VT1-Sakai carrying the Shiga toxin 1 genes of the enterohemorrhagic Escherichia coli O157:H7 strain derived from the Sakai outbreak JOURNAL Gene 258 (1-2), 127-139 (2000) PUBMED 11111050 REFERENCE 3 AUTHORS Ohnishi,M., Murata,T., Nakayama,K., Kuhara,S., Hattori,M., Kurokawa,K., Yasunaga,T., Yokoyama,K., Makino,K., Shinagawa,H. and Hayashi,T. TITLE Comparative analysis of the whole set of rRNA operons between an enterohemorrhagic Escherichia coli O157:H7 Sakai strain and an Escherichia coli K-12 strain MG1655 JOURNAL Syst. Appl. Microbiol. 23 (3), 315-324 (2000) PUBMED 11108008 REFERENCE 4 AUTHORS Makino,K., Yokoyama,K., Kubota,Y., Yutsudo,C.H., Kimura,S., Kurokawa,K., Ishii,K., Hattori,M., Tatsuno,I., Abe,H., Iida,T., Yamamoto,K., Onishi,M., Hayashi,T., Yasunaga,T., Honda,T., Sasakawa,C. and Shinagawa,H. TITLE Complete nucleotide sequence of the prophage VT2-Sakai carrying the verotoxin 2 genes of the enterohemorrhagic Escherichia coli O157:H7 derived from the Sakai outbreak JOURNAL Genes Genet. Syst. 74 (5), 227-239 (1999) PUBMED 10734605 REFERENCE 5 (residues 1 to 1400) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (15-AUG-2018) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 6 (residues 1 to 1400) AUTHORS Ogura,Y., Kurokawa,K., Hayashi,T. and Hattori,M. TITLE Direct Submission JOURNAL Submitted (26-JUN-2000) Contact:Yoshitoshi Ogura Kyushu University; 31-1 Maidashi Higashi-ku, Fukuoka, Fukuoka 812-8582, Japan COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence is identical to BAB35484. On Aug 15, 2018 this sequence version replaced NP_310088.1. On May 10, 2018 this sequence version replased gi: 47118301 This update is obtained as follows: the Sakai genome was resequenced by illumina MiSeq and PacBio RS II sequencers and 78 sites of single base error, 11 sites of insertion (10 one-base insertions and a 141-base insertion) and 16 sites of deletion (14 one-base deletions, a three-base deletion and a six-base deletion) were corrected. Annotation was performed using DFAST auto-annotation system with manual curation. This work was done in collaboration with Tetsuya Hayashi, Makoto Ohnishi, Keisuke Nakayama (Miyazaki Medical College), Kozo Makino, Ken Kurokawa, Katsushi Yokoyama, Masashi Tanaka, Takeshi Honda, Teruo Yasunaga, Hideo Shinagawa (Osaka University), Takahiro Murata (Shinshu University), Chang-Gyun Han, Eiichi Ohtsubo, Toru Tobe, Chihiro Sasakawa (University of Tokyo), Hideto Takami (Japan Marine Science and Technology Center), Naotake Ogasawara (Nara Institute of Science and Technology), Satoru Kuhara (Kuyshu University), and supported by the Research for the Future Program of the Japan Society for the Promotion of Science. Method: conceptual translation. FEATURES Location/Qualifiers source 1..1400 /organism="Escherichia coli O157:H7 str. Sakai" /strain="Sakai" /sub_strain="RIMD 0509952" /serovar="O157:H7" /db_xref="taxon:386585" Protein 1..1400 /product="type IV secretion protein Rhs" /calculated_mol_wt=156338 Region 1..1256 /region_name="RHS_core" /note="RHS element core protein; NF041261" /db_xref="CDD:469161" CDS 1..1400 /gene="rhsC" /locus_tag="ECs_2061" /coded_by="NC_002695.2:2046050..2050252" /transl_table=11 /db_xref="GeneID:917262" CONTIG join(WP_000014822.1:1..1400) ORIGIN 1 msgkpaarqg dmtqyggpiv qgsagvriga ptgvacsvcp ggmtsgnpvn pllgakvlpg 61 etdlalpgpl pfilsrtyss yrtrtpapvg ifgpgwkaps dirlqlrdda lvlndnggrs 121 ihfepllpge avysrsesmw lvrggkaaqp dghtlarlwg alppdirlsp hlylatnsaq 181 gpwwilgwse rvpgaedvlp aplppyrvlt gmadrfgrtl tyrreaagdl ageitgvtdg 241 agrefrlvlt tqaqraeear kqhtaslssp dtprplsdsa fpdtlpgtey gpdrgirlsa 301 vwlthdpayp eslpgaplar ytyteagell avydrsntqv raftydaqhp grmvahryag 361 rpemryrydd tgrvveqlnp aglsyryqye qdritvtdsl nrrevlhteg gaglkrvvkk 421 eladgsvths gydaagrlta qtdaagrrte yglnvvsgdi tdittpdgre tkfyyndgnq 481 ltavvspdgl esrraydepg rlvsetsrcg dviryaydnp hselpatttd atgstrqmtw 541 srygqllaft dcsgyqtrye ydrfgqmtav hreegisryr rydnrgrlts vkdaqghetr 601 yeynaagdlt avitpdgnrs etqydawgka vsttqggltr smeydlagri ttltnengsr 661 seftydaldr lvqqrgfdgr tqryhydltg kltqsedegl vtlwhydesd rlthrtvnge 721 paeqwqydeh gwlteishls eghqvavhyg yddkgrlage rqtvhnpetg ellwqheteh 781 ayneqglanr vtpdslprve wltygsgyla gmklggtplv eftrdrlhre tvrsfgnnay 841 eltstytpag hlqsqrlnsq vydrdydwnd ngdlvrisgp rqtweygysa tgrlesvrtl 901 asdldiripy atdpagnrlp dpelhpdstl tawpdnriae dahyvyrhde ygrltektdr 961 ipagvirtdd erthhyhyds qhrlvfytri qhgeplvesr ylydplgrrm akrvwrrerd 1021 ltgwmslsrk pevtwygwdg drlttvqtdt triqtvyepg sftplirvet engerekaqr 1081 rslaetlqqe gsenghgvvf paelvrlldr leeeiradrv ssesrawlaq cgltveqlar 1141 qvepeytpar kvhfyhcdhr glplalised gntawrgeyd ewgnqlneen pyylhqpyrl 1201 pgqqhdeesg lyynrnryyd plqgryitqd piglaggwnl ynyplnpiir mdplglynly 1261 qllydvwhdd sygtssidit gsgdlislgg haglgvafak kkgemlsdic iyatacghag 1321 iggginaait ysetkslpts gvsnsvgvtv gggvgghfay tyvvdvdnpe sstesvgiga 1381 gvdasvmtla crtwqecwvn