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LOCUS NP_308621 869 aa linear CON 12-FEB-2021 Sakai]. ACCESSION NP_308621 VERSION NP_308621.1 DBLINK BioProject: PRJNA226 BioSample: SAMN01911278 DBSOURCE REFSEQ: accession NC_002695.2 KEYWORDS RefSeq. SOURCE Escherichia coli O157:H7 str. Sakai ORGANISM Escherichia coli O157:H7 str. Sakai Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia. REFERENCE 1 AUTHORS Hayashi,T., Makino,K., Ohnishi,M., Kurokawa,K., Ishii,K., Yokoyama,K., Han,C.G., Ohtsubo,E., Nakayama,K., Murata,T., Tanaka,M., Tobe,T., Iida,T., Takami,H., Honda,T., Sasakawa,C., Ogasawara,N., Yasunaga,T., Kuhara,S., Shiba,T., Hattori,M. and Shinagawa,H. TITLE Complete genome sequence of enterohemorrhagic Escherichia coli O157:H7 and genomic comparison with a laboratory strain K-12 JOURNAL DNA Res. 8 (1), 11-22 (2001) PUBMED 11258796 REMARK Erratum:[DNA Res 2001 Apr 27;8(2):96] REFERENCE 2 AUTHORS Yokoyama,K., Makino,K., Kubota,Y., Watanabe,M., Kimura,S., Yutsudo,C.H., Kurokawa,K., Ishii,K., Hattori,M., Tatsuno,I., Abe,H., Yoh,M., Iida,T., Ohnishi,M., Hayashi,T., Yasunaga,T., Honda,T., Sasakawa,C. and Shinagawa,H. TITLE Complete nucleotide sequence of the prophage VT1-Sakai carrying the Shiga toxin 1 genes of the enterohemorrhagic Escherichia coli O157:H7 strain derived from the Sakai outbreak JOURNAL Gene 258 (1-2), 127-139 (2000) PUBMED 11111050 REFERENCE 3 AUTHORS Ohnishi,M., Murata,T., Nakayama,K., Kuhara,S., Hattori,M., Kurokawa,K., Yasunaga,T., Yokoyama,K., Makino,K., Shinagawa,H. and Hayashi,T. TITLE Comparative analysis of the whole set of rRNA operons between an enterohemorrhagic Escherichia coli O157:H7 Sakai strain and an Escherichia coli K-12 strain MG1655 JOURNAL Syst. Appl. Microbiol. 23 (3), 315-324 (2000) PUBMED 11108008 REFERENCE 4 AUTHORS Makino,K., Yokoyama,K., Kubota,Y., Yutsudo,C.H., Kimura,S., Kurokawa,K., Ishii,K., Hattori,M., Tatsuno,I., Abe,H., Iida,T., Yamamoto,K., Onishi,M., Hayashi,T., Yasunaga,T., Honda,T., Sasakawa,C. and Shinagawa,H. TITLE Complete nucleotide sequence of the prophage VT2-Sakai carrying the verotoxin 2 genes of the enterohemorrhagic Escherichia coli O157:H7 derived from the Sakai outbreak JOURNAL Genes Genet. Syst. 74 (5), 227-239 (1999) PUBMED 10734605 REFERENCE 5 (residues 1 to 869) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (15-AUG-2018) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 6 (residues 1 to 869) AUTHORS Ogura,Y., Kurokawa,K., Hayashi,T. and Hattori,M. TITLE Direct Submission JOURNAL Submitted (26-JUN-2000) Contact:Yoshitoshi Ogura Kyushu University; 31-1 Maidashi Higashi-ku, Fukuoka, Fukuoka 812-8582, Japan COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence is identical to BAB34017. On May 10, 2018 this sequence version replased gi: 47118301 This update is obtained as follows: the Sakai genome was resequenced by illumina MiSeq and PacBio RS II sequencers and 78 sites of single base error, 11 sites of insertion (10 one-base insertions and a 141-base insertion) and 16 sites of deletion (14 one-base deletions, a three-base deletion and a six-base deletion) were corrected. Annotation was performed using DFAST auto-annotation system with manual curation. This work was done in collaboration with Tetsuya Hayashi, Makoto Ohnishi, Keisuke Nakayama (Miyazaki Medical College), Kozo Makino, Ken Kurokawa, Katsushi Yokoyama, Masashi Tanaka, Takeshi Honda, Teruo Yasunaga, Hideo Shinagawa (Osaka University), Takahiro Murata (Shinshu University), Chang-Gyun Han, Eiichi Ohtsubo, Toru Tobe, Chihiro Sasakawa (University of Tokyo), Hideto Takami (Japan Marine Science and Technology Center), Naotake Ogasawara (Nara Institute of Science and Technology), Satoru Kuhara (Kuyshu University), and supported by the Research for the Future Program of the Japan Society for the Promotion of Science. Method: conceptual translation. FEATURES Location/Qualifiers source 1..869 /organism="Escherichia coli O157:H7 str. Sakai" /strain="Sakai" /sub_strain="RIMD 0509952" /serovar="O157:H7" /db_xref="taxon:386585" Protein 1..869 /product="outer membrane usher protein FimD" /calculated_mol_wt=95969 Region 10..869 /region_name="PRK15198" /note="outer membrane usher protein FimD" /db_xref="CDD:185120" CDS 1..869 /gene="fimD" /locus_tag="ECs_0594" /coded_by="NC_002695.2:652150..654759" /transl_table=11 /db_xref="GeneID:916950" CONTIG join(WP_001301865.1:1..869) ORIGIN 1 mkiptttdip qrytwclagi cysslailps flsyaesyfn pafllengtf vadlsrferg 61 nhqpagvyrv dlwrndefig sqdivfestt entgdksggl mpcfnqvlle riglnssafp 121 elaqqqnnkc inllkavpda tinfdfaamr lnitipqial lssahgyipp eewdegipal 181 llnynftgnr gngndsyffs elsginigpw rlrnngswny frgngyhseq wnnigtwvqr 241 aiiplkselv mgdgntgsdi fdgvgfrgvr lyssdnmypd sqqgfaptvr giartaaqlt 301 irqngfiiyq syvspgafei tdlhptssng dldvtiderd gnqqnytipy stvpilqreg 361 rfkfdltagd frsgnsqqss pfffqgtalg glpqeftayg gtqlsanyta fllglgrnlg 421 nwgavsldvt harsqladds rhegdsirfl yaksmntfgt nfqlmgyrys tqgfytlddv 481 ayrrmegyey dydydgehrd epiivnyhnl rfsrkdrlql nisqslndfg slyisgthqk 541 ywntsdsdtw yqvgytsswv gisyslsfsw nesvgipdne rivglnvsvp fnvltkrryt 601 renaldraya sfnanrnsng qnswlagvgg tlleghnlsy hvsqgdtsnn gytgsatanw 661 qaaygtlgvg ynydrdqhdv nwqlsggvvg hengitlsqp lgdtnvlika pgaggvrien 721 qtgiltdwrg yavmpyatvy rynrialdtn tmgnsidvek nissvvptqg alvranfdtr 781 igvralitvt qggkpvpfgs lvrenstgit smvgddgqvy lsgaplsgel lvqwgdgans 841 rciahyvlpk qslqqavtvi savcthpgs