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LOCUS NP_001284878 3446 aa linear INV 26-DEC-2023 ACCESSION NP_001284878 VERSION NP_001284878.1 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 DBSOURCE REFSEQ: accession NM_001297949.1 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (residues 1 to 3446) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (residues 1 to 3446) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (residues 1 to 3446) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (residues 1 to 3446) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (residues 1 to 3446) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (residues 1 to 3446) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (residues 1 to 3446) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (residues 1 to 3446) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (residues 1 to 3446) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (residues 1 to 3446) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (residues 1 to 3446) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (residues 1 to 3446) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (residues 1 to 3446) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (residues 1 to 3446) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (residues 1 to 3446) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (residues 1 to 3446) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (residues 1 to 3446) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (residues 1 to 3446) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (residues 1 to 3446) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (residues 1 to 3446) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (residues 1 to 3446) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (residues 1 to 3446) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (residues 1 to 3446) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. The reference sequence is identical to AHN59349. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## Method: conceptual translation. FEATURES Location/Qualifiers source 1..3446 /organism="Drosophila melanogaster" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" Protein 1..3446 /product="rugose, isoform P" /name="CG44835 gene product from transcript CG44835-RP" /note="CG44835-PP; rg-PP; facetious; pebbled; drosophila A kinase anchor protein; A-kinase anchoring protein; A kinase anchor protein 550; rugose" /calculated_mol_wt=380952 Region 256..404 /region_name="Laminin_G_3" /note="Concanavalin A-like lectin/glucanases superfamily; pfam13385" /db_xref="CDD:463865" Region 675..1159 /region_name="DUF4704" /note="Neurobeachin/BDCP, DUF4704 alpha solenoid region; pfam15787" /db_xref="CDD:464870" Region <1469..1843 /region_name="PspC_subgroup_2" /note="pneumococcal surface protein PspC, LPXTG-anchored form; NF033839" /db_xref="CDD:468202" Region 2452..2633 /region_name="DUF1088" /note="Neurobeachin-like, DUF1088; pfam06469" /db_xref="CDD:461925" Region 2657..2754 /region_name="PH_BEACH" /note="PH domain associated with Beige/BEACH; pfam14844" /db_xref="CDD:434260" Region 2786..3062 /region_name="Beach" /note="Beige/BEACH domain; pfam02138" /db_xref="CDD:460459" Region 3163..3435 /region_name="NBCH_WD40" /note="Neurobeachin beta propeller domain; pfam20426" /db_xref="CDD:466575" Region 3185..3221 /region_name="WD40 repeat" /note="WD40 repeat [structural motif]" /db_xref="CDD:293791" Region 3227..3278 /region_name="WD40 repeat" /note="WD40 repeat [structural motif]" /db_xref="CDD:293791" Region 3283..3318 /region_name="WD40 repeat" /note="WD40 repeat [structural motif]" /db_xref="CDD:293791" Region 3330..3360 /region_name="WD40 repeat" /note="WD40 repeat [structural motif]" /db_xref="CDD:293791" Region 3365..3400 /region_name="WD40 repeat" /note="WD40 repeat [structural motif]" /db_xref="CDD:293791" CDS 1..3446 /gene="rg" /locus_tag="Dmel_CG44835" /old_locus_tag="Dmel_CG15464" /old_locus_tag="Dmel_CG6775" /gene_synonym="AKAP; Akap550; CG15464; CG15466; CG44835; CG6775; DAKAP550; Dmel\CG44835; fas; Rg" /coded_by="NM_001297949.1:4968..15308" /db_xref="FLYBASE:FBpp0310998" /db_xref="GeneID:44531" /db_xref="FLYBASE:FBgn0266098" ORIGIN 1 mdslerlmra aplprmltsg vvataaaaas aaagkgmvsv gggataiaag ggqqralvha 61 slaaatvgrk grhltgtfcl tgdtmegiiq clvflkafsl vggefdmeln fviqdaqnik 121 hmlelldhcp pnlqaeiwsv fiailrksvr nlqactdvgl iehvlvrlqr setvvadlli 181 emlgvlasys itvkelkllf gtmkatngkw prhsakllnv lrqmphrngp dvffsfpgrk 241 gsamvlppla kwpyengftf ttwfrldpin svnierekpy lycfktskgv gytahfvgnc 301 lvltsmkvkg kgfqhcvkye fqprkwymia ivyiynrwtk seikclvngq lasstemawf 361 vstndpfdkc yigatpelde ervfcgqmsa iylfsealtt qqicamhrlg pgyksqfrfd 421 necylnlpdn hkrvshfqll patlgasals ggsgsgtgsg tgndasaaaa aavaagqqqq 481 lqlqfqilaa eqearaidws dekldlnaaf vkiravltar navtlagsss tgttavataa 541 aaaaaagaga gttaaatsaa aaaaatqnen daavgqqqha thhhataatg saddplghlp 601 tgnassssss feqlrrmssv sslnsmvgsa dteevnqlka vlydgklsna ivfmynpvat 661 dgqlclqssp kgnvsyfvht phalmlqdvk avvthsihct lnsiggiqvl fplfsqldma 721 heglgdikrd ptlcskllgf icelvetsqt vqqhmiqnrg flvisfmlqr ssrehltlev 781 lgsflnltky lvtclsansd lllkqlldhv lfnpalwiyt panvqarlys ylateflsdt 841 qiysnvrrvs tvlqtvhtlk yyywvvnpra ksgiipkgld gprpaqkdil airayillfl 901 kqlimigngv kedelqsiln ylttmheden lhdvlqmlis lmsehpssmv pafdvkhgvr 961 sifkllaaes qlirlqalkl lgfflsrsth krkydvmsph nlytllaerl llyeeslslp 1021 tynvlyeimt ehisqqilyt rhpepeshyr lenpmilkvv atlirqskqt eslidvkklf 1081 lqdmtllcns nrenrrtvlq msvwqewlia mayihpksse eqkisdmvys lfrmllhhai 1141 kheyggwrvw vdtlaivhsk vsyeefklqf aqmyehyerq rtdnitdpal rqarpistis 1201 gwereelhqq qnggsaaava tnqtaavkgs vsiasledvp pvveeeveel eleeveiqeg 1261 piteeteqks vianisdvyn eqlktdatcn gnledvkeee pvqqqigdle kqpepstplg 1321 alretlqlgd dmdveelela takdalnaeq hvsrvlqase aalndckmav ddvlqesssv 1381 lkdeeielav nevvqgvlnn ekktqsqdnk dnkeqpgeqd vnvsllnskn llnnnnnnnn 1441 nspsptptta tataeteaet evnaneivss teapkaetet svapevetpe takpspivps 1501 pvlatnqkte daanklnnne klaeisaspe ppivvetpea dllqlsdset kpnketeaed 1561 svalavrdiv eqlidkvida teaesasetk tetnnneipk kekqtseepe dvetaetlaa 1621 aakeivqevv eaalvmvqee stqekpekga nseeekneig keeillqlee kpastevqet 1681 kiegdlkkpe dpkghssvep ktpnleepkp qeteqqksqe vaeelpqkpe eqvvaivnqv 1741 ldtlvddtvk avaaeqttqt spapeeqspq ilamespats vrvkptevds ttqttpknea 1801 gssllveqvq qvlqeddaqq sagmtieded ysnqqaaaav enanssqlda nhygpgnpes 1861 kqqqqrsksg strpmfspgp trppfripef kwsyihqrll sdvlfsletd iqvwrshstk 1921 svldfvnsse naifvvntvh lisqladnli iacggllpll asatspnsel dvleptqgmp 1981 levavsflqr lvnmadvlif atslnfgele aeknmssggi lrqclrlvct cavrncleck 2041 ertrynvgal ardvpgaahl qalirgaqas pknivesitg qlspvkdpek llqdmdvnrl 2101 raviyrdvee tkqaqflsla ivyfisvlmv skyrdilepp aepqiqrqsp vlqrtagggg 2161 rqiqdsdyei ivvdennpsv ladndshssg ppsiksvdsd vgslnmnste nevpevesss 2221 eiliddhkps hsndeswtdv nlnedaavqa asagivvglv dnrgnvisdk hdpshhnqqq 2281 qqqagiigqq qqhgslghse rgdkpdseis vvrvpdgygg agsgggvnsg qgqgvpsnqr 2341 prpeelpmka palvaqlplt tpsreasltq kleialgpvc pllreimvdf apflsktlvg 2401 shgqellmeg kglttfknsh svvelvmllc sqewqnslqk haglafieli negrllsham 2461 kdhivrvane aefilnrmra ddvlkhadfe sqcaqtller reeermcdhl itaarrrdnv 2521 iasrllekvr nimcnrhgaw gdssstssgg aivgavqksp ywkldawedd arrrkrmvqn 2581 prgsshpqat lkaalenggp edailqtrde fhtqiavsrt hpsgqhngel lddaellied 2641 reldldltgp vnistkarli apglvapgtv sitstemffe vdeehpefqk idgevlkycd 2701 hlhgkwyfse vraifsrryl lqnvaleifl asrtsilfaf pdqhtvkkvi kalprvgvgi 2761 kygipqtrra smmsprqlmr nsnmtqkwqr reisnfeylm flntiagrty ndlnqypifp 2821 wvltnyeskd ldlslpsnyr dlskpigaln psrrayfeer yeswdsdtip pfhygthyst 2881 aaftlnwlvr vepfttmfla lqggkfdypd rlfssvslsw kncqrdtsdv kelipewyfl 2941 pemfynssgy rlghredgal vddielppwa kspeefvrin rmalesefvs cqlhqwidli 3001 fgykqrgpea iratnvfyyl tyegsvdldg vldpvmreav enqirnfgqt psqllmephp 3061 prssamhlsp mmfsampedl cqmlkfyqns pvihisanty pqlslpsvvt vtaghqfavn 3121 rwncnytasv qspsyaespq spgsnqplti dpvlavhgtn nnsnaasrrh lgdnfsqmlk 3181 irsncfvttv dsrfliacgf wdnsfrvfat etakivqivf ghfgvvtcma rsecnitsdc 3241 yiasgsadct vllwhwnart qsivgegdvp tpratltghe qavtsvvisa elglvvsgss 3301 ngpvlihttf gdllrsldpp aefhspelit msregfivin ydkgnvaayt ingkklrhet 3361 hndnlqcmll srdgeylmta gdrgivevwr tfnlaplyaf pacnagirsl althdqkyll 3421 aglstgsiiv fhidfnrwhh eyqqry