Unfortunately due to lack of commercial feasibility, the SkyBLAST service has been suspended from December 1st, 2025.
All subscriptions for paid accounts have been paused. For further information or enquiries, please email [email protected]
LOCUS NP_001284849 2779 aa linear INV 26-DEC-2023 ACCESSION NP_001284849 VERSION NP_001284849.1 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 DBSOURCE REFSEQ: accession NM_001297920.1 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (residues 1 to 2779) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (residues 1 to 2779) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (residues 1 to 2779) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (residues 1 to 2779) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (residues 1 to 2779) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (residues 1 to 2779) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (residues 1 to 2779) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (residues 1 to 2779) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (residues 1 to 2779) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (residues 1 to 2779) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (residues 1 to 2779) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (residues 1 to 2779) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (residues 1 to 2779) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (residues 1 to 2779) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (residues 1 to 2779) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (residues 1 to 2779) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (residues 1 to 2779) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (residues 1 to 2779) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (residues 1 to 2779) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (residues 1 to 2779) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (residues 1 to 2779) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (residues 1 to 2779) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (residues 1 to 2779) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. The reference sequence is identical to AHN59320. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## Method: conceptual translation. FEATURES Location/Qualifiers source 1..2779 /organism="Drosophila melanogaster" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" Protein 1..2779 /product="lava lamp, isoform D" /name="CG6450 gene product from transcript CG6450-RD" /note="CG6450-PD; lva-PD; Lava-Lamp; actin-binding protein 2; LAVA LAMP; lavalamp" /calculated_mol_wt=315770 Region <215..>740 /region_name="Smc" /note="Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; COG1196" /db_xref="CDD:440809" Region <666..>911 /region_name="COG4913" /note="Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]" /db_xref="CDD:443941" Region <875..1632 /region_name="SMC_prok_B" /note="chromosome segregation protein SMC, common bacterial type; TIGR02168" /db_xref="CDD:274008" Region <1449..>1857 /region_name="Smc" /note="Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; COG1196" /db_xref="CDD:440809" Region <2058..>2544 /region_name="Smc" /note="Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; COG1196" /db_xref="CDD:440809" CDS 1..2779 /gene="lva" /locus_tag="Dmel_CG6450" /gene_synonym="ABP2; CG#6450; CG6450; Dmel\CG6450; lava; Lava; Lva; LVA; LVA_DROME; lvl; Lvl" /coded_by="NM_001297920.1:254..8593" /db_xref="FLYBASE:FBpp0309608" /db_xref="GeneID:31350" /db_xref="FLYBASE:FBgn0029688" ORIGIN 1 maedsgales sydfsivqpd dheygeadir lagssndlss lqnvsasttr gtkgkgrlds 61 lkenlykqqe rltalkeral rksqderhks smsdsmeslk tlgqkltvlk trsgdsstpl 121 vsptkdsdpg dvsllqtsgs ekllmltqrt eqnralleqr krdlakslls vksnighqtt 181 aelgssmtdl rhaasvsnpp vsrhrsaldl eaqgqeavde srvkllrsrm kltelkqgrq 241 eqelnelrte lakraklier lelsgaelqr tltqrneele qlrvvqaeed slkvqensrl 301 qgevlvlrer laelenvndl lettrcelqe elttarerqr nleleqeqek asrspqseaa 361 htdaqvsael akqlqeltnq ladlqatnee lrqqvaaqak lqvtdeivsq rleeleatia 421 aqllelqeqk samaaqneel aekttelnvl nvnlrlleek laqssrskpl fledhsedsa 481 askqmqedlq qlklkldetn kaniklklkc kqaekklqkf qsqdgqqqla slladneelq 541 qriavledek gqwqlanmqe ddrqpeqste snnplqleti rlleeqklel qqaleallss 601 sssaesieiv erhhleclgq rrpasegdaq eqkqvhppgp shvseltqte qteeedssge 661 tlsqlrerle lftqergevl dkleqlsaen lqlqarlees ssslqllqre rekdlissts 721 tssnlsqels smqrssevva tldageggpv lfekceksls klnseleayr kandrqakfn 781 vskklakeak nchtqlsell hkvkeastav etvtvvetvv avtapngkal aeyeqlnaqn 841 aelkavisrl rqeldelres ypeteaplai vgsdsqrede ilqlqsqled arslqaeqrq 901 qieeqvdqik elrqteaeql qlvarqsaei tqlqlqseqf dqllnskems hekqleqqtr 961 irrelearae slegelsilq tlvaeqkqql iesvseseha lnlkmlelqs aqeelrelra 1021 kedpdqlrea lrvskslvaq qvreltssqe tvdalnqqiq eyqglehahk eeqfknrelr 1081 eklkkyalnl kkrtqdnadl eqkvqeltsq lqeqqelvkq keeverepiv dnhrveqlqq 1141 qvsklnedlk akihlnlenr dalrqlkqqi qeqeqliqer daelqdanlv skelrrerqe 1201 adqevfqlgq ensrlreeis klqeeihnlg qrvneeptav edlrrqleak skkfekskel 1261 iklrnatiqs lqrelqqlqq dqdsevehvr naraaheqlr lekdaeital rqeilklers 1321 raagegddti tktshqlles qsqqqaeslq vaerelqqlr vqltaaqeqh allaqqyasd 1381 kanfemtiar letlhegiqa klqedasyie sleaqntelq arsaaleeqa asqanqqaas 1441 qdkvqileqq lkeqreqeeq krqqdqqlqe rfyelgqreq aqsrqlellt seaeesrqql 1501 aglrteyesl lakhsqltat aqaereqmss hsqeelaelr qqldvkeadl hrqrqvydak 1561 laakatelde lecdlnshve raaaetrelc qqlersqelv aqrteelqrl neefqevere 1621 rstlsrevtl lrlqhdsaeq dvlelqelrm qamqdktemd nlrtqidalc anhsqelqal 1681 qqriaeldtl gqnqtddqvy ietenkrlae qlselqaqla rqqhqqqqqq hhhpavqsqq 1741 hpppaslffg gdalaapspf deiaqplrvs slaasapppi sppptiedlq rnvsdlekha 1801 qdletkllar nqnlaeqeer rlqleqrlse verllsertq qladiqtane erdrlaalek 1861 liqpaaaptl dmffggqaee tvpdavshhl dlglpqtepv vepliqpkka ylcqpkqeiq 1921 eqtaqtidwg vdedpwasaa neapqtdveh lhtriaqlel qlsnaeqqkt elqtkaaklm 1981 krlkeyktka tttatptvtv dndldstiie elkhqlqlqe srlskaeeis qqhalekekl 2041 akridvltag ndrmaemker qdmdvqmyqa rirelqekls qldqwgepaa tvsssldgde 2101 aarieslqqe iqqlrqqvse ledertrdqa elgalrqssq gydeaednqk lelqqlrqqe 2161 selealrtrd qselealrqs cqghdetvri atlqqdnqql elqqlrqaii eletlrardq 2221 telealrqss qghdeaaria ieqrdnqqle lqqlrqqlie lealrardqa elealrqscq 2281 gqqlsvdmas rndeqmaqlq ekeseivhlk qrieelmred qteklvfeil tknqelqllr 2341 mqvkqleedk edqqvsaapp kddgetvekl kslcqqlqqe ksdmeeelrv lnnhvlssle 2401 ledrmkqtll qldtknieit elrrsleilq sqnlgqnsaa eqipdlsain qqweqlveqk 2461 cgevasiwqe hlsqreaafk aqleevtqqq qrelpqsqqs tqgeatsdim qkmqkaletq 2521 emeivtlkeq lairsaeyar laaqydpfrl qnrggasggn pasttvsagg ppsltanepl 2581 peyvlkadld yalmmlhqrd mrveemivel vqlleerdhl qlklsdtlrq letersrvsd 2641 epsatasssa asssspskis sagsnsellg ttsaagsdlk qklaelqtvk hskdkvivde 2701 reqrlqqmlq lqkdmakqgs gsqsgagava avaaptsaap taigvdlsqs glrspsmmlm 2761 dwilgnnnke eeaghqttg