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LOCUS NP_001259491 3607 aa linear INV 26-DEC-2023 ACCESSION NP_001259491 VERSION NP_001259491.1 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 DBSOURCE REFSEQ: accession NM_001272562.1 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (residues 1 to 3607) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (residues 1 to 3607) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (residues 1 to 3607) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (residues 1 to 3607) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (residues 1 to 3607) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (residues 1 to 3607) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (residues 1 to 3607) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (residues 1 to 3607) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (residues 1 to 3607) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (residues 1 to 3607) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (residues 1 to 3607) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (residues 1 to 3607) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (residues 1 to 3607) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (residues 1 to 3607) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (residues 1 to 3607) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (residues 1 to 3607) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (residues 1 to 3607) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (residues 1 to 3607) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (residues 1 to 3607) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (residues 1 to 3607) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (residues 1 to 3607) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (residues 1 to 3607) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (residues 1 to 3607) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. The reference sequence is identical to AGB95333. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## Method: conceptual translation. FEATURES Location/Qualifiers source 1..3607 /organism="Drosophila melanogaster" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" Protein 1..3607 /product="smrter, isoform G" /name="CG4013 gene product from transcript CG4013-RG" /note="CG4013-PG; Smr-PG; smarter; smrter; SMRT-related ecdysone receptor interacting factor; SMRT-related ecdysone receptor-interacting factor; SANT domain protein; silencing mediator of retinoid and thyroid hormone receptors-related ecdysone receptor-interacting factor; lethal (1) G0060" /calculated_mol_wt=379718 Region 708..>776 /region_name="GPS2_interact" /note="G-protein pathway suppressor 2-interacting domain; pfam15784" /db_xref="CDD:464868" Region <725..1020 /region_name="TPH" /note="Trichohyalin-plectin-homology domain; pfam13868" /db_xref="CDD:464007" Region 1009..1048 /region_name="Myb_DNA-binding" /note="Myb-like DNA-binding domain; pfam00249" /db_xref="CDD:459731" Region <2187..>2323 /region_name="Atrophin-1" /note="Atrophin-1 family; pfam03154" /db_xref="CDD:460830" CDS 1..3607 /gene="Smr" /locus_tag="Dmel_CG4013" /gene_synonym="anon-WO0153538.73; CG12719; CG4013; Dmel\CG4013; E52; l(1)G0060; l(1)G0361; lincRNA.983; smr; SMR; SMRTER" /coded_by="NM_001272562.1:1281..12104" /exception="nonconsensus splice site" /note="unusual splice" /db_xref="FLYBASE:FBpp0305909" /db_xref="GeneID:32225" /db_xref="FLYBASE:FBgn0265523" ORIGIN 1 meaairstsv qvgappptnn nnsssssssn snnnntsnnn nnssnsgnnn tpngaqqqqq 61 qhhqqqqqhh qqqrvvassn qqqqqqqlqq qqqqqqqqqq qqqqqqhdng ptshhlhqss 121 isisnqqnka tqqqqqqqqq qhqkqqqqqa ssmsayqqrl psnaasihsp hwsyraleqq 181 qqyakqaahl qqqqqhqshq qqqqqqqqdq rtnlhlqihh hhqqqqqqqq qqqqqqqqqq 241 qqqqqkqqqh hmqqqqqqqp lspphppgss snsssaaaaa aaaaaaaaav npgyppssaa 301 aaavnsgypp rppqhrfiqn tgysiapapt yrdnpysrht qiqqqqqqqq qqqqqqqqqq 361 qqqqqaaasm peyqraaara avaavsagkg nvsgqssnss ssssgggggg gsaggsappg 421 ggvvqvsqsg gvlvmeamph yasqpnsnps qqqqqqhqqq qggnpsgaga tsgagggggg 481 sggsvmvgsl grilmphpqa lqytseyltn ataavaaamv nqrqhlqlqq qqqqqhppep 541 fggqqpykkq rlseanannm nhlpphpqqq hqqqqqqqqq hqahqqqhqr sspaqvqqqq 601 qqqmnssrqs hndmcrqvvt tpmgmqlkve tlpqqqqkqq qhqqqqqqqq qqgrsqpvvs 661 smstvvsqpv gtvtvttagl sashsgssgn vaaglgtgnt gsasteayhp qveaisptlp 721 sdssieergr tsakedllmq iqkvdneiks aettmetlrk kekslmeeaa lakeqraake 781 lndnnndqep mvelswrsqm laekiyaanr ktaqaqhsml qnaaadessp gsvagrpwlp 841 lynqpldvea lamlirqhqs qiraplllhi rklkaerwah nqglvekytk dqadwqrrce 901 rmeasakrka reaknreffe kvftelrkqr edkerfnrvg srikseadle eimdglqeqa 961 ledkkmrsya vipplmhdar qrrcayhnen gliedmvavh qqrkalnmwt ageketfkek 1021 ylqhpknfga iaasldrksp qdcvryyyls kktenykqll rksrqrtrss rnpakaqaaq 1081 pqciidsmtt gvmtrlqreq qqksggrssa vaereraera aerervaeka aadaakaaes 1141 aaekasaatk aveataagek vakaaaaaaa aaattattat tttssstsss sssassasta 1201 ssstaspatl agiaadktda gktasasdkn aataggptat gtptaattpa tatappeisa 1261 ggeaksknae eeaaatagaa tvatagtpat gasaasagea ttatgatata aakgvgkpet 1321 atepagtaak gadsrpdand plaktaskai naegynaigg nssssssnat gasapvqgvt 1381 lngfkpgyqt vvmanvkast ggddsganag gaapgslaat nasiatsgdk ivkttpssra 1441 pnstsstaan esssgagvnt yghtattagn ylgqklkaaq veglgagnel hsdvseskrk 1501 rfelnsgeag gnatsamtns stsgsmnisn shglkanakd gsmmaktsma stssasvvvt 1561 stpsassssl ssassmllis aasvmstaag atssstattt atasaislpl ladgsgnsmv 1621 naneilaldg kdklascfvc kaeacprtrp lkkgrgqqyg ipdetipaga rvcnscqcks 1681 vrsrypncpl ptcpnpkdra qrlrnipsrl felapevrdp lmaefqipph atrccsaclm 1741 rirrkldpql nltdgssgga gsgsggdetd vstsscdere pggsdtasve spenlqrhks 1801 ltmvkqqqqq qqqqqqqqqq qqqqqqqqls qpqppppapq qqkgssgrgg dqgtpliitp 1861 trmssksgsg gaqtagdner llppaagqap kkqktseeyd ssatetadee nenspanrqs 1921 pkvlfhghgh ghgghannva glqppvanmg tgggvqpgga agqqvngpis mrreavnnvq 1981 dcvfsviers lkhkgpqpkg gqgqqqgqgq gqgqgqgqtp gqsqspsqqq qqqqqqqsan 2041 nlerkeltiv reyrqdpgil kqqqqqqqag gapptsaags lphgtsvqkl ttrpaavapp 2101 ppahpltpts tgcagsnngt sdslatlsvv nshmgmvgig hpgpmahass aggigvdkat 2161 itpvvksssg ssksgggsas shstatppet iiynvpvahp qrgipppsqh svhpahpsht 2221 qhpahpqhss hgqhtqlqvp epepqtldls ikkpprdghs phtgaggsss sgsgsggpss 2281 sdrhhgpppp tmsmkhivrs ggmyrgdtvt vpslaapssy lyptrsvkti ggggvvpgvl 2341 pgvpgsalyl qpvpvpvpis isgqgqlppr agqpppaqpp sgrgvakvpp klspqqahhl 2401 hpshghspsq qqqqqqqqqq qqqqqaaaaq qqllvksgsi thgtpansaq qqiivhapat 2461 aaaapsslls pkfdglvrqt tpegvgsvgp ggasgsgkhg sitqgtplhm pphhleskrp 2521 yesyykssqr hspaqqpggn qqlppppqqs spqapppqgy gvgvsspyar spfagvveqp 2581 qvlstrqivm hdyitsqqmq gqqqqqqqqq qqqrnmsrgs sasggggggg sdkespsprn 2641 svgsasgfay ggdkesaprg rpeyssrasp adhvnstpsp hrtpppqrqg viqrhntgsk 2701 ppspaappps rmhmppyqya psghdalasf vdvavqqpql pvpsqkddks pgpstapgqv 2761 pgsgpplgps plpphavvgv aqpppptahh dqryrdltlh hhhhtlvqqq iaqqqhyrsl 2821 nvaaqvdmqr qmdqakrvmr hqqhqvqqqq qqqqqqqhnh alerdremqe rmrerdrere 2881 rerereqrer ererererer ererreqdra rrvvaeereh dsrrmermfa gnvvtgsgga 2941 ggggpspgqf lrasvpetgp prsipdrere syyrqahggp apedtpgqls aqslidaiik 3001 heinrsndat agpgrefprp sfvhaplppr gsgsgggtgt rsspanvlhp mylrdlrqpl 3061 dggagsmlta enngkpsssg spsvinidld qerisaaaaa vaqqqqqqqa pppsqssqsr 3121 svhgqlrtpt sqaggsapsp qqihtksitf geltdsiits dygtnphlrp pymaylqetq 3181 silppdrwkq nrrmqqkaee akhhsqqqqq qqhqqqhhaq qqqqqqqqhh aqqhhpqmpg 3241 tgsgsapgga gqgggsggpg sggggagras tpgedgrnii rmpqavsprk fnhemmlhhv 3301 mgttgaggea gqfflpsrvv lpeqrgtpsg gggapgaggp gsgggattie kyvktriaev 3361 mrddigygkn rtvevrtede vtadmvahsh aavhaahvah aahvahaaam elqhrskepp 3421 ppeisvsrkt pnqyevvdas grrsagsgsv svsvsgansh hspyhppaaa yapstyafpy 3481 salnvpgaag glpphqplql ahqavappga fakakaahal selgavgggv slvvgggsgg 3541 iaggpggvsv gvgvpggggp gsgggggggh nssssqasaa vaaavaaaas eskplllsky 3601 dalsded