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LOCUS NP_001259424 2652 aa linear INV 26-DEC-2023 melanogaster]. ACCESSION NP_001259424 VERSION NP_001259424.1 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 DBSOURCE REFSEQ: accession NM_001272495.1 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (residues 1 to 2652) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (residues 1 to 2652) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (residues 1 to 2652) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (residues 1 to 2652) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (residues 1 to 2652) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (residues 1 to 2652) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (residues 1 to 2652) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (residues 1 to 2652) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (residues 1 to 2652) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (residues 1 to 2652) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (residues 1 to 2652) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (residues 1 to 2652) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (residues 1 to 2652) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (residues 1 to 2652) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (residues 1 to 2652) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (residues 1 to 2652) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (residues 1 to 2652) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (residues 1 to 2652) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (residues 1 to 2652) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (residues 1 to 2652) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (residues 1 to 2652) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (residues 1 to 2652) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (residues 1 to 2652) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. The reference sequence is identical to AGB95267. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## Method: conceptual translation. FEATURES Location/Qualifiers source 1..2652 /organism="Drosophila melanogaster" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" Protein 1..2652 /product="uncharacterized protein, isoform D" /name="CG43347 gene product from transcript CG43347-RD" /note="CG43347-PD" /calculated_mol_wt=281874 Region 1031..1146 /region_name="PR-SET_PRDM-like" /note="PR-SET domain found in PRDM (PRDI-BF1 and RIZ homology domain) family of proteins; cd10534" /db_xref="CDD:380932" Site order(1044..1045,1062,1107..1111,1113,1122..1123) /site_type="active" /db_xref="CDD:380932" Site order(1044..1045,1107..1111,1113) /site_type="other" /note="SAM binding site" /db_xref="CDD:380932" Region 1198..>1268 /region_name="NR_DBD_like" /note="DNA-binding domain of nuclear receptors is composed of two C4-type zinc fingers; cl02596" /db_xref="CDD:413390" Site order(1198,1201,1227,1230,1248,1257,1267) /site_type="other" /note="zinc binding site [ion binding]" /db_xref="CDD:143512" Region 1198..1219 /region_name="C2H2 Zn finger" /note="C2H2 Zn finger [structural motif]" /db_xref="CDD:275368" Site order(1198,1201,1214,1219) /site_type="other" /note="Zn binding site [ion binding]" /db_xref="CDD:275368" Site order(1203,1205,1207,1209..1210,1213..1214,1218,1232,1234, 1238..1239,1242..1243,1255,1264,1266,1268,1270..1271, 1274..1275,1279) /site_type="other" /note="putative nucleic acid binding site [nucleotide binding]" /db_xref="CDD:275368" Site order(1218..1219,1222,1228..1229,1231,1233,1236,1239, 1264..1265,1268) /site_type="DNA binding" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:143512" Region 1227..1255 /region_name="C2H2 Zn finger" /note="C2H2 Zn finger [structural motif]" /db_xref="CDD:275368" Region 1259..1280 /region_name="C2H2 Zn finger" /note="C2H2 Zn finger [structural motif]" /db_xref="CDD:275368" Region 1292..1313 /region_name="C2H2 Zn finger" /note="C2H2 Zn finger [structural motif]" /db_xref="CDD:275368" Site order(1292,1295,1308,1313) /site_type="other" /note="Zn binding site [ion binding]" /db_xref="CDD:275368" Site order(1297,1299,1301,1303..1304,1307..1308,1312,1327,1329, 1333..1334,1337..1338,1341,1357,1359,1361,1363..1364, 1367..1368,1372) /site_type="other" /note="putative nucleic acid binding site [nucleotide binding]" /db_xref="CDD:275368" Region 1322..1342 /region_name="C2H2 Zn finger" /note="C2H2 Zn finger [structural motif]" /db_xref="CDD:275368" Region 1350..1373 /region_name="C2H2 Zn finger" /note="C2H2 Zn finger [structural motif]" /db_xref="CDD:275368" CDS 1..2652 /gene="CG43347" /locus_tag="Dmel_CG43347" /old_locus_tag="Dmel_CG15295" /old_locus_tag="Dmel_CG9817" /gene_synonym="BcDNA:RH11383; CG15295; CG9817; Dmel\CG43347" /coded_by="NM_001272495.1:357..8315" /db_xref="FLYBASE:FBpp0304664" /db_xref="GeneID:31991" /db_xref="FLYBASE:FBgn0263072" ORIGIN 1 mkkkqkqkqq qqqqqrqska pseaeseadr pgsnssstsn nkhsppaast ttttkrrqvs 61 ssnnntsnhk nnskrcsrss ssssscssss ssssnasvgs smsktssgnp aaagatnaan 121 aadfsafdfn dssdnsdtpl vprppflsra aataaaaaaa aaalsisnns nnsagsagql 181 phstssssnn nnnnnnnnga nsvnsnannn nyghsssssq ssmdeeeedd eeedeeeeee 241 qdvsqqqqqq qqlaaeqqqr aaaaaavvaa avsalhngnk qqhynnnnnn nnngntksrd 301 radhhlqsqq qqehdddedd deeegeeded eddeeqhqeq qqqhqgnghd ltptdlrhvm 361 pasnnlqqqh tqqqqepaay ddegeeeded dddedevass hldsratlss ghlnsaaaae 421 ssglhmsvaa aaaaaaaaaa avsaaklnaq leqqqsanal dmasgssatp iappppssll 481 ggnsntsfst nnnsnhalss thgslgpggq gtncsndlma tgggnsrggs slslginsss 541 aaalqhqhqq qqqqqqhggg sggssaaser rkyrhqnysk niyigtknae kwehmrtrlq 601 fkndvefvay llnladndtd rlnnlpppsp antptkgfdg nfklepnlsa kdfatpaess 661 ingngsgnts gngngdsasa asipmvtptp pqrkrykkrv qftsetlngf agktkgsgsg 721 gagagfsyak skkqeakaat aalkasaaaa aaaaassalp evldcriaek ikseleansk 781 eslpnalclk kaaaaaaaaa aaaaavaaaa ngseeedede dqpphphllp vlppadavdg 841 itasngqagn fhvrsksqgs kksqaakaaa aammppnsyd ehddepgagl ggndeddddd 901 eeldeealar emkmeqnfve eedehdiafr shqscrecsi ahdhklcplr nacgnvtdav 961 dlgewierrn lealaklkad aqrqakrasg rqrhedddme dmedmdmdmd essqlselet 1021 kplitfaeas vpaefelhnv epnvtgvfar tevraftklg pligqpvqtg evregsdmkw 1081 ifemceagad ksyllccdnp nasnwlrfvr papsyeernv nlvsidrqay fvscrdlrng 1141 mellywsddc ntmwrkkhte ktncggcnlk fehplyyrth csvfhdpsms ltirkyhckv 1201 cgepvlgkdn imkhaaekhd gkgayqcqfc skfflrlnyl emhrtygcas npnrsrpvcd 1261 fcgrkfcqpq klkahikrmh sdmaevlrdf qcklcskllg sraalqrhsk evhsrnstvv 1321 scprcqklfq nrsnlkihml thsgvrpfkc aepecnaaft tkqclqfhyk kvhnytqeqm 1381 pkiersvayt fdaysggmkv dfleqaprrr rksledqssm lsgslqsdae fsddnlfeai 1441 kksgksikdl crnepnlsll sskissifgd kvpsatasls asvsavassg arkrkrkkep 1501 vvpaqqqlhl hqqqqqqqqq qqqsqhqqqh qqqhaqqlqh qqlqqqhaqq hqqqqhhlhq 1561 qhqqlhhdpq qqhpqyhphq lhahalphqq qqqqqqqqqq qqqlhgdpdd eevenarleq 1621 vrrkqnaqls lvesflttta qrlsaqqqvq qvvaaaaavs amagagedpa klghmmghmg 1681 vgvgvgmdee edddeddddg gggggggggs avqhhphvha hqahhshvha hahphhahsh 1741 ahphqhpasq gagqqdyrha aamnaalgqn lvvskgskkw iqevqdssdv ggegaggggg 1801 gpgdsggpgg ggacgqlagg sgpgpdlgfa vpptavdehs kllgqnrdfl arlmssasas 1861 hahahahaha hahqphqthq qhqhsahsre edenssfldv vesnnnaaaa aaaaaalshy 1921 gggagsgsag ggsggqtptg patgggsvag gdepqmqmns lahsqsfmss fynnanarvg 1981 gvgggvvgvg vgggsssasm lveaalnsvg nmidsessdl kvptdnhins dspmsahvdp 2041 esqrfgagsa ggaggggggg ggggssggss ggangsgigg gmdnlenelk mmknlgsfpm 2101 qipplpmfqg acnispsast ptnpqsnqnq ndvdvdagst prpqhpdsdg fssshhrtpp 2161 spppispgrd yggmfgagng gggpgsnstp agsssggggg ggggagggga nsmsassplp 2221 alqpqrrnas svgstypehe lispasspsi prynfngdmm rhkravqeqe hqerqrqnis 2281 rhnqmssdee nsimpqnsag qdmrmkfpqs qidlmyskye smasnlkyns qdldspaeyr 2341 qggagnggna aasaaaaaaa aasaandlsd lqgldmssrs naassnyhhn fqlpssryhh 2401 hiydilsdre qqsqqaqqag gavvgggggg gagaasvvhq qehghgqhha mqqhqqsaaa 2461 mhnmlseqlg eqehdqttsv dlsrtanyvv ssppqlpynh pthhdmlrma sldltpntan 2521 mavgnnrsfl ssqmqhqsre slehhrllst veqhrilaas naadqhrllv dptahllmeq 2581 nnrllgtadq srllgesaaa aaqnrhmars fgayhqvass nyhpgvrppp vlpsanhhas 2641 npsnyhpfpa yy