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LOCUS NP_001259267 3218 aa linear INV 26-DEC-2023 melanogaster]. ACCESSION NP_001259267 VERSION NP_001259267.1 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 DBSOURCE REFSEQ: accession NM_001272338.1 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (residues 1 to 3218) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (residues 1 to 3218) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (residues 1 to 3218) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (residues 1 to 3218) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (residues 1 to 3218) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (residues 1 to 3218) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (residues 1 to 3218) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (residues 1 to 3218) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (residues 1 to 3218) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (residues 1 to 3218) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (residues 1 to 3218) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (residues 1 to 3218) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (residues 1 to 3218) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (residues 1 to 3218) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (residues 1 to 3218) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (residues 1 to 3218) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (residues 1 to 3218) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (residues 1 to 3218) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (residues 1 to 3218) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (residues 1 to 3218) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (residues 1 to 3218) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (residues 1 to 3218) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (residues 1 to 3218) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. The reference sequence is identical to AGB95113. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## Method: conceptual translation. FEATURES Location/Qualifiers source 1..3218 /organism="Drosophila melanogaster" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" Protein 1..3218 /product="Ca[2+]-channel protein alpha[[1]] subunit T, isoform F" /name="CG15899 gene product from transcript CG15899-RF" /note="CG15899-PF; Ca-alpha1T-PF; Ca1G" /calculated_mol_wt=355632 Region 300..636 /region_name="Ion_trans" /note="Ion transport protein; pfam00520" /db_xref="CDD:459842" Region 1243..1495 /region_name="Ion_trans" /note="Ion transport protein; pfam00520" /db_xref="CDD:459842" Region 2175..2448 /region_name="Ion_trans" /note="Ion transport protein; pfam00520" /db_xref="CDD:459842" Region 2492..2728 /region_name="Ion_trans" /note="Ion transport protein; pfam00520" /db_xref="CDD:459842" CDS 1..3218 /gene="Ca-alpha1T" /locus_tag="Dmel_CG15899" /gene_synonym="alpha1T; alphaIT; ca-alpha1T; Ca-alphaT-RC; Ca1G; Caalpha1T; cat; CG12544; CG15899; CG4222; DmalphaG; Dmca1G; Dmel\CG15899; T-type Ca[2+]" /coded_by="NM_001272338.1:401..10057" /db_xref="FLYBASE:FBpp0306997" /db_xref="GeneID:31550" /db_xref="FLYBASE:FBgn0264386" ORIGIN 1 mlpqpaaava tatttttqsa tsatstaats aaaaaarngq rrrvaaateg cnsnignsns 61 klssntttnt tkrvsqmhsn eeppmtvivd ggggsnvsvs ggsshrrgsq rlrktssssa 121 naksasanpt ertssgqrss hrqtsnasdg ggssrrryqg kehhdrrdrq drqdrqdrqe 181 rsdrherrdr rdeqqaarrr tgrrhsgass lsdaaaataa grsrsrgggr tggavssstg 241 sscngscssd dgdsshtsss ssssssgepn lpypgfpeis iraltqytrp rnwclmlitn 301 pwfervsilv illncitlgm yqpcvddacv tnrckilqif ddiifaffal emtikmvamg 361 icgkntylad swnrldffiv laglleyvmh venlnltair tirvlrplra inripsmril 421 vmllldtlpm lgnvlllcff vffifgiigv qlwegilrqr cslmrtegmv ypltvpevyr 481 vrvrvnslsq yyefskdqdy icstpndsgm hlcgnfppyr igslvcneea klfdfneptn 541 tscvnwnqyy ttckqsgenp fqgtisfdni gmawvaiflv islegwtdim yyvqdahsfw 601 dwiyfvlliv igsffminlc lvviatqfse tkkremermr qerarytsts tlasstnnse 661 patcyaeivk yiahlwrrfk rrmlkkyrly kyqrqqrkeg llpnadnltf spsrikchhp 721 kcpkysnrkp ssiqdqmitv mvplnsasnn innnnnnnsn ssnhngsgnh taagggnnnn 781 nnnnnnaasc ttvalvngin gsaasvtmss ahhqqhqllq hqqqqhqnqq qqqqqqqhss 841 sdnteqslap dglprssslk kstahhqlkp egsaaeqkti llkfpqqmid seqlilqlgn 901 lgkshpctsg flspptsasr rpsvmfneyv llhtppalna dpatagtttt vaptvatvag 961 taaaaaaaaa tgsgsgnnnh qnggasggag tggtteksni fstekmtqag dgsiwqvnlp 1021 qtigtianpy adcselgihd amtcqellaf svafsaalpt gqstlesfyt slarcdphta 1081 ealrahhkpr svptgqnqtt pgaegatvmv astagdtgqt lqpstvsavv ggtidshaan 1141 hrrkehhqqs hhhhnnnntt shsrnyrsrq gqgnsrmrep raptgnymed yaccydlyqn 1201 alsplderpr qrspttrcli svyrcmsrvc swirryirrl vehkyfqqgi llailintls 1261 mgieyhnqpp eltaivetsn vvfsgifave mllkvvaegp fryiangfnv fdgiivilsa 1321 ieicqtfmgn gtggggsgls vlrtfrllri lklvrfmpnl rrqlfvmlrt mdnvavffsl 1381 lvlfififsi lgmylfggkf ckfldesgle rectcpeiis rhpqcecdrk hfnnilwatv 1441 tvfqiltqed wnvvlfngme ktshwaalyf valmtfgnyv lfnllvailv egfsserner 1501 rereqrelvk klreetlaen ysdgmydesr seadssttnd syyevrnrwr saedvrklqd 1561 sveliieaks nmhrqrllqp thdyqinelp assaapsasg tsgasapgdr erdrdrdrdr 1621 erdrdrdrer dreaggggke egaqhakprg glkktysike rrseaprlsk irlardppii 1681 tttaatpqds psttlepgms frqwgdmepp sppspsllrp pniftggqrs ldegipsidl 1741 ippspvlshk plnilnasql gvgmgggvps tagssssmhs viiddiskss sstaaatpiy 1801 vptisstada qsqshslndv svgsspggei patgmsrnan tgastsgsss serlplappp 1861 qqgsfkqrlr rgsskkrras alalatddnp arrtldnqar rtqdeeeeqq qlnnggdnsc 1921 llrnsnavvs gsssgtketn rlspqnsirr lsntlsigsg pvgsrrasac ifnsqvyqnl 1981 nqppklrpgs gqrrmssiel afsktshlnl hnleanrksl sytnskmdld kwnksygnln 2041 epdnmlqqym eardkrknsi shynlkkrle ekelqqlqql hqqqllqqrq dsfssttqqq 2101 qqqlqqhrls kdqqqlamqp hsmvpggger ysklkmlieq ltpkhftter edyslyifpe 2161 dnrfrqictw fvnqkwfdnv vllfialnci tlamerpnip pssterlfla tanyvftvvf 2221 tvemfikvva tgmfyghday ftsgwnimdg slvtisiidl lmslisessp rifgilrvfr 2281 llrslrplrv inrapglklv vqtllsslrp ignivlicct ffiifgilgv qlfkgtfyyc 2341 egenikgvrn adecrripgn vwtnrkynfd dlgkalmslf vlssrdgwvn imytgldavg 2401 vdqqpivnyn ewrllyfiaf illvgffvln mfvgvvvenf hrcreeqeke ekirraakra 2461 lqmekkrrrm heppyytnys ptrmfvhnvv tskyfdlaia aviglnvvtm ameyykmpsg 2521 lkyalkifny fftavfilea nmklvalgwk lylkdrwnql dvgivllsiv givleeletn 2581 thqiipinpt iirvmrvlri arvlkllkma ngiralldtv mqalpqvgnl gllffllffi 2641 faalgvelfg rlecsdeipc qglgehahfa nfgmafltlf rvatgdnwng imkdtlrdnc 2701 ddaadcvrnc cvssviapif fvifvlmaqf vlvnvvvavl mkhleeshkq medeldmeve 2761 lerelvreqe faqeqklcqq laeaqskaaa pprplakvks lpknfiystp sldkkfpavs 2821 gvnnpsltss aatnlnqvat agsggaapga vpagsgagpr rqtvqyfqqp pqsmlgglsl 2881 aemggtltpq algarlgepf gggggnksgp rrqsywqinp irkrgvlske rsldeqairr 2941 rnleakrtsc dslpwggdal dcrrgtifes lesdgggvgg ggsggggggl gggvsydlrs 3001 vrsadvghse mdgdvslsvv salvpsvttp lppplslpiv tptstptplq lpmpmpmpma 3061 hppprrpfgw sqsvdqgclr snlllsvprs mpprsrsgst kqlfkqqald edadmdensl 3121 llptaagggs gpgsvavias ssldlpdqsg sskqilpdia lgvsksdssd ilriiserrr 3181 mdqreqrepe qdqdneaedr dsdykelllv kspqssmd