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LOCUS NP_001259183 3417 aa linear INV 26-DEC-2023 ACCESSION NP_001259183 VERSION NP_001259183.2 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 DBSOURCE REFSEQ: accession NM_001272254.2 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (residues 1 to 3417) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (residues 1 to 3417) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (residues 1 to 3417) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (residues 1 to 3417) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (residues 1 to 3417) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (residues 1 to 3417) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (residues 1 to 3417) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (residues 1 to 3417) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (residues 1 to 3417) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (residues 1 to 3417) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (residues 1 to 3417) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (residues 1 to 3417) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (residues 1 to 3417) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (residues 1 to 3417) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (residues 1 to 3417) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (residues 1 to 3417) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (residues 1 to 3417) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (residues 1 to 3417) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (residues 1 to 3417) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (residues 1 to 3417) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (residues 1 to 3417) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (residues 1 to 3417) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (residues 1 to 3417) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. The reference sequence is identical to AGB95029. On Jul 15, 2014 this sequence version replaced NP_001259183.1. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## Method: conceptual translation. FEATURES Location/Qualifiers source 1..3417 /organism="Drosophila melanogaster" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" Protein 1..3417 /product="pecanex, isoform E" /name="CG3443 gene product from transcript CG3443-RE" /note="CG3443-PE; pcx-PE" /calculated_mol_wt=365697 Region 2523..2747 /region_name="Pecanex_C" /note="Pecanex protein (C-terminus); pfam05041" /db_xref="CDD:461533" CDS 1..3417 /gene="pcx" /locus_tag="Dmel_CG3443" /gene_synonym="CG3443; Dmel\CG3443; DMPCX; EG:30B8.4; fs(1)12-1012; fs(1)12-1743; fs(1)12-2135; fs(1)12-3014; fs(1)12-3102; fs(1)12-4169; fs(1)14-1153; fs(1)14-567; fs(1)A387; fs(1)M10; fs(1)pcx; mel(1)R; mel(1)R1" /coded_by="NM_001272254.2:416..10669" /db_xref="FLYBASE:FBpp0309618" /db_xref="GeneID:31204" /db_xref="FLYBASE:FBgn0003048" ORIGIN 1 mgsqtleilr qgvwasltgg yfydphqgvf cnvvhlylwl yllcspfvay liflqyfpst 61 wltwclycvi tsltilmvkl anlalhrlyd raqtmsegnl kgqfvkvtke teprhddegg 121 iemkvirpgg srisgeqain easeensims idnvnsiidl kvdvhrknss esielmfyap 181 smlsggsqqd qqslagsasv sksirstgpg gnsstsaaaq admfnkyltv ypevveaags 241 sagsadggss ggdsrsgaav stlghtgagt apaqhvrtgh lsrkcsevfs rrhrrrlerq 301 ssldtaaaaa nsnaenklmr nqsdtiataa psflhsqptn kargqtnprq hfitsapstg 361 igggdaptss tavvviapas nslvnpgrss rlqrhrsset hderlkhqsr gglfqpilql 421 phhsaassig alavlggggn vaandvedme lglvrnagsg gvadacsral qswildpfpd 481 gyleddsytk sdlgieqphq ptfrtqhrhh hhhhhlhhhl ggaiirkdpt stmsalqlaa 541 vtqpgtggsv tggggaaggg gsaagmkrrr hsnatsykhg ssqsnksslv ggggsrgpsg 601 eagtsggagg tggvrriksa alevlcpqps vsnlsphpns veaisgqqqm rnplpppsks 661 lvrnqhlnly ptqgygdgtp saggggpgns stcsslffgs ssacgsttal ieppvypive 721 hsdektahee hgddclgigq gnaddddevd dvpirrrtra lgcsqthysv esdvggflad 781 evgadedvfk dfddnlehil selqqthnql ddvlkthdlh hhshlhhhka asvegagpsg 841 gsvavgvsag nddedeeted nntgsrspll ndrnrqpatl reiqadkqlr qelshqsgav 901 ipapnppvpi rseadsgcps sdceqvsass kdqllsgiel elqqyqilqr cqldeeqpct 961 skmaakslga ipkvvkyrev delrrrrrgg spadaaeagn efalvkqtkq asrnssssns 1021 thsisltdsl tadihkmlwl mhggavddrg rpitgtsadg tpipassslv ppnmsnahfq 1081 fyqdaiqalq gthptsgssv ehmtnielar dklrldaklm ceqlvaaaea nsgvrgntla 1141 tqqmtqqqvg mlmrggsssr hpssapfsvq glinvirser paarsqldal qqlsdaaaal 1201 aanaseaasv sasgagggas sggggvlsal glanhpsnqi sqisqlsqms qpmlnvdghf 1261 apycdywrpa cllsatekpa apksfykyrf kwcgqehefk iamdrlella lfdrdlhwmh 1321 vllasllctl vaclgaailq hdhykdlcal lfcaviagaq yslvksvqpd aaspvhgfnk 1381 tvaysraiyf claggmllll krldtdyger tpdpvvffgm ryspadvval llqalyilll 1441 cfpiifsvgl cpqintflmy lleqidmhvf ggnaassllg sflcvvrsvl avmllygply 1501 galdeqrgtq yilfsifcam lvplgyhlsr casdfshlwr liktcivsty rddededlsq 1561 mqhiatgtvt gsgtanstal qlttstpkqh rqtdvktehe qielsslekl tvneehhekd 1621 hgaddqletd qdlplqqkhs ksktsslgss qqtlgktiss skraitasss ctsigtgepa 1681 veagalteea vegeeqrrnt lagevgskhe laenydqaak idecedkiss ssatnpgdms 1741 tltagagtat tdatpaclea dpdaeaeapa dekqhqgilg tgtgtgtgtt easengsggg 1801 angntnsngt gndlpdplpr klqatvttrl kndlvvmtll avsvlglhcs tvftalqpdl 1861 nvvlysfigv lglllhyivp qmrkhmpwlc fsrpllrqre fgqfevlnap kimwfeklyi 1921 ylsvlernvl fpllaisslt adsqlivakf glpwgtliva icalkfvrna ysdptnqyli 1981 iiftvllfri dfamatetfi idyffvslaf rkccdfllkl qfivtyiapw qitwgsafha 2041 faqpfsvphs amlflqaais avlstplnpf lgsaifltsy vrpikfwerd yntrridhsn 2101 trlssqlerd lgaddnnlns ifyehltrsl qhslcgdllm grwgnvnqgd cfvlasddln 2161 clvhiielgn glctfqmrgl efrgtycqqr eveaitedve dndgccccdp ghlpqllsan 2221 amfstrwlaw qvvaaqyvie gysisdnlas atlqvfeyrk vlityyiksi iyyvvknpkl 2281 eqwlasgpiq dalqhtlsrq fvdldpifnf nldedfdfra vgitrssfcy vylkwinycv 2341 dmrrdansmg gappaqapaa aggassapat agvappapvt pahndskstp nlsahggqag 2401 pssgqsksqs qqqlrrpqks vaqetsvggg gvvvggttvp gtggvtgggg dpqlssshsf 2461 anisrqtses apglggyvay mdqnvfvkla ksstttgaga gaptsrkesq ekpalrlkla 2521 svgkdaplvs lclalgllar rslatashsa ltgvefflhg lhalfkgdfr itsprdewvf 2581 admellhsvv apavkmalkl qqdhitnpde fldphalyda idncsnelvi sheadpvwrs 2641 avlrgapnll alrhvmedgs deyriirltk rclsfrvikl nrecvrglwa gqqqeliylr 2701 nrnpergsiq nakqalrnii nsscdqpigy piyvspltts yadtnaqlce viggaitldt 2761 irhtvlgwwh rirercrqgc ssgsalephp gsgpvqlgac nfgsggsvvg aastatgvga 2821 stgsglgvaa pgtagstgge sgdlapvfis aplyntltvn syysvrpgnv pggpipgnlg 2881 gnyvsdslav vrgglavmpv kptsttliag llnrerdets gsgimgagas gptratssgg 2941 vrsrrpevgs srgrdherra tlpiasggag gepgkdltap qtqvehepsp rstklssssg 3001 slglgmgvgl gniittpgdy prktkgpicl tavdtgtsss aaegkpagsg tvagtgvggv 3061 irkprieifk kviivddtgi ydcldiidav vwptermrnn ggrlswkdwe psagmvghvv 3121 hcwtpnhkdi rfrshvnryv ylveigdhyv pveelglrey nqimgsteem ansrrssiqr 3181 dfheyniqlk laglapiigg gesstattsd askshkakir avsssssede dtsstrsipl 3241 pqgddgdltn ftrlvsmwke iildnnkrrl ydmgelspel lqklddavqq qqqledalae 3301 eskekgtatv tanegeegvg emeiepeqeq kevvyleeqs pleevtvskp deqpaqptip 3361 aspvpaetss tssakstssp slcqeeedav dpeetpelas eespsdenge seagttv