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LOCUS NP_001245641 3013 aa linear INV 26-DEC-2023 ACCESSION NP_001245641 VERSION NP_001245641.1 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 DBSOURCE REFSEQ: accession NM_001258712.2 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (residues 1 to 3013) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (residues 1 to 3013) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (residues 1 to 3013) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (residues 1 to 3013) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (residues 1 to 3013) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (residues 1 to 3013) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (residues 1 to 3013) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (residues 1 to 3013) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (residues 1 to 3013) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (residues 1 to 3013) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (residues 1 to 3013) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (residues 1 to 3013) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (residues 1 to 3013) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (residues 1 to 3013) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (residues 1 to 3013) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (residues 1 to 3013) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (residues 1 to 3013) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (residues 1 to 3013) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (residues 1 to 3013) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (residues 1 to 3013) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (residues 1 to 3013) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (residues 1 to 3013) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (residues 1 to 3013) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. The reference sequence is identical to AFH07355. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## Method: conceptual translation. FEATURES Location/Qualifiers source 1..3013 /organism="Drosophila melanogaster" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" Protein 1..3013 /product="tenascin accessory, isoform L" /name="CG42338 gene product from transcript CG42338-RL" /note="CG42338-PL; Ten-a-PL; Teneurin-a; central-body-defect; teneurin; tenascin-like molecule accessory; central body defect" /calculated_mol_wt=328376 Region 563..586 /region_name="EGF_2" /note="EGF-like domain; pfam07974" /db_xref="CDD:400365" Region 629..651 /region_name="EGF_2" /note="EGF-like domain; pfam07974" /db_xref="CDD:400365" Region 660..683 /region_name="EGF_2" /note="EGF-like domain; pfam07974" /db_xref="CDD:400365" Region <661..772 /region_name="C_rich_MXAN6577" /note="MXAN_6577-like cysteine-rich domain; NF041328" /db_xref="CDD:469225" Region 789..818 /region_name="EGF_CA" /note="Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the...; cd00054" /db_xref="CDD:238011" Region 825..851 /region_name="acid_disulf_rpt" /note="acidic double-disulfide repeat; NF033662" /db_xref="CDD:411265" Region 1248..1553 /region_name="NHL" /note="NHL repeat unit of beta-propeller proteins; cl18310" /db_xref="CDD:302697" Region 1301..1347 /region_name="NHL repeat" /note="NHL repeat [structural motif]" /db_xref="CDD:271320" Region 1371..1413 /region_name="NHL repeat" /note="NHL repeat [structural motif]" /db_xref="CDD:271320" Region 1428..1473 /region_name="NHL repeat" /note="NHL repeat [structural motif]" /db_xref="CDD:271320" Region 1490..1523 /region_name="NHL repeat" /note="NHL repeat [structural motif]" /db_xref="CDD:271320" Region <1744..>1874 /region_name="RHS_core" /note="RHS element core protein; NF041261" /db_xref="CDD:469161" Region <1992..2641 /region_name="RhsA" /note="Uncharacterized conserved protein RhaS, contains 28 RHS repeats [General function prediction only]; COG3209" /db_xref="CDD:442442" Region 2898..2975 /region_name="Tox-GHH" /note="GHH signature containing HNH/Endo VII superfamily nuclease toxin; pfam15636" /db_xref="CDD:464783" CDS 1..3013 /gene="Ten-a" /locus_tag="Dmel_CG42338" /old_locus_tag="Dmel_CG12720" /old_locus_tag="Dmel_CG15733" /old_locus_tag="Dmel_CG32659" /gene_synonym="1.2; cbd; CG11270; CG12720; CG15733; CG18182; CG2578; CG2590; CG32659; CG42338; Dmel\CG42338; Dmtena; DmtenA; ten-a; Ten11A; tenA; tenA(AT)[[14]]; ten[a]; Ten[a]" /coded_by="NM_001258712.2:1018..10059" /db_xref="FLYBASE:FBpp0300542" /db_xref="GeneID:32183" /db_xref="FLYBASE:FBgn0267001" ORIGIN 1 mtmksmkysd cdtimdgynp vppplprrvp pvrniyaepf ahepnhssrl gghpqqmpqs 61 mstgsntigh ggidrggvgl pmgagtmpgg vgggpggvag ggpqvgvgpp gsgnggncqi 121 sgsqplvmpg fplrnshsah aphyspysps rfhidkrcqh rcswkclsia lifvsvvlta 181 mlayfaavss mkpnmdstnc ilvqdvksqp hdlrgglaks nekgvatafp teesiqtsts 241 dhgqnghglm npsagsggsn sgiqqqlllq qqqphsinqp ltpldatnth lqdhhqltyg 301 galpggvggi gmsgggimng glngglggql mqqpggglng hhhqalqpql ggvvelkefn 361 eayhatipay qfwtlefrnk hpafirfnft lpwgahfavy srrnvapsvt qhdfvefikg 421 grldshlrhr rssanatttg qdmelyrqdk dqsaesaqdq dseqdesrsf dssesydvet 481 pldtakqhlq rigkpqshwv nkrsagdglp aldvdamtvn vsllqyldtg lwfisvynde 541 lvahsvslla eeaegvsttc pndcsgrgsc ylgkcdcidg yqgvdcsksv cpvlcsahgh 601 ygggvchcee gwkgaecdip vgecevpncs shgrciegec hcergwkgpy cdqhdcldpl 661 csghgtcvag qcyckagwqg edcgtidqqv yqclpgcseh gtydletgqc vcerhwtgpd 721 csqavcsldc grngvcesgk crcnsgwtgn lcdqlpcdsr csehgqckng tcvcsqgwng 781 rhctlpgcen gcsrhgqctl engeyrcdci egwagrdcsi alelnckdni dndgdgmtdc 841 sdseccshpa csehimclss ndpvevllrk qppsvtasfy qrvkflieen svqsyahmde 901 ysenlfwssf tpcrvsvmrg qvitpqglgi vgirvsvdrd srfgftltrq ggwfdvlvng 961 ggavtlqfqr spfrpltrtv fvpwnrivvl ppvqmqlsdd dettsrnikv aplnpaltfl 1021 nsihyhtade andaskvcmd hdheklrpql istwmpngvg ampgkrvifa etqivqesiq 1081 ipgsdlhlty qssqasgyls ivrmrltget ipptlthvhv gveiegalhv ktyeadpslv 1141 htfawnkrnv yrqkvygvtv arisvgyqhs tcqspvwiaq taklqgydvd isdiggwgld 1201 ihhhynfheg ilqkgdgstl hmkeyprtvk vvmgtglqrp ltcpdycngv akdaklltpi 1261 alatgpdgsl yvgdfnlvrr itpdgkvyti lqlsatqvsy qyylavspad ghlyisdper 1321 hqilrlvrle kvkdpsinsd pvvgsgqrci pgdegncgdg gpallarlsh pkglaiaadr 1381 tmyiadgtni ravdpkgvih tlighhghhn hwspapcsgt lmanqaqlqw ptglalspld 1441 gslhfiddrl vlrltsdmki rvvagtplhc snggqdgrvn ktgadnvlgt vlamafspfg 1501 nlyiadsdsr rvnsirvvdt agnmryfagk qegtgsqtcd caigggsngs atnsgvggag 1561 gsaysttvnp trpnggttpt tpsggngngn gngssatssg gsvggsngsg gganggacic 1621 aggialstgt gsssgsnggg tlasivgsgg lmstgptttt tvllgaktta agigaatlnd 1681 dgtlsnaetl lssnarfqai saiavaqdgv invadqgslh vlalehylps hdengefhip 1741 fppsseiyvf nrygqhvatk dltsgktrys flyskntsfg rlstvtdasg nkiqflrdys 1801 nvvssientq dhkseiqing igimtklsek grqeieldyd sntgllnsrs sggetyiyqy 1861 defgrvtgmi lpsgeivrit sqladsqglt vyvhasvesl fsreriagea nellvlggvr 1921 stflkrgqah adaelkannt lvihgdngvv veasavarhp lleaalpvea emlamwshqs 1981 vtmgegltns mysvyslvgd vrnpqqtlnr eiwvnqsrvi gvefdqftnr etfydarrtp 2041 ilivaydqsg lpksyyptng ypvnitydrf nrvegwawgp aelkysydrh gllseitsqq 2101 dgivsfvynd wnlvseigla sqrkfvlqyd dagglrhvvl psgtrhsfsm qtsigfirct 2161 ytppgstray lqhyshagal lqtilpgdga rivyrynaag qltevvhgdg rsefqyneat 2221 gmpstvshte releyrwdfe yaagllaeer idyvaktgls nakfsyeyds qlrvvalqgr 2281 iggqslptqa faydprtgrp sligqfrfsq paqnqtqlhd gtasftrtvd grfqtqrmal 2341 aihrlevfrm efsygvhgri sqtrtytrnm avnsytnvkn ytwdcdgqlv gveaqepwgf 2401 ryddngnlls ltyrgntipm eynaqdrivk fgegqykyda rglvaqnare erfhyntqgl 2461 lvraskrgrf dvryyydhlk rlttrkdnfg nvtqffytnq qrpyevsqiy sprdgklmsl 2521 tyddvghliy aqvyrhkyyv atdqsgtplm lfnqygegir eimrspfghi vydsnpylyl 2581 pidfcggild qvttlvhmgd grvydpligq wmspdwqrva eriitptrlh lyrfngndpi 2641 nvgherhype dfaawmrtlg ynvgnlvpql ardlwqppal wgrppanpva lnlrrpfdni 2701 ptmavesgfl ahlnvrrmsd feqlsapprs alkcdvmdps pktigsdtep pfgkgivvsr 2761 tadgqaivss vpaanaiyrd vytsvfnrsk llpftfvvhn aqqdsfffvk edawratedr 2821 qqlkrlqgqv nttfheitre atvgsgpaga anggagssss sssssgggss sntgnyldvk 2881 ihgahaiinl rygttvakeq qrlmhhaklt avrkawhrek ealrsgltta lewsqqetde 2941 ilkqsyanny egeyihdvnl ypelaedpyn ikfvkkkgat ggaagvpnsr rrrrrstdli 3001 qeeeeelhre adc