Unfortunately due to lack of commercial feasibility, the SkyBLAST service has been suspended from December 1st, 2025.
All subscriptions for paid accounts have been paused. For further information or enquiries, please email [email protected]
LOCUS NP_001245545 3200 aa linear INV 26-DEC-2023 melanogaster]. ACCESSION NP_001245545 VERSION NP_001245545.1 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 DBSOURCE REFSEQ: accession NM_001258616.1 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (residues 1 to 3200) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (residues 1 to 3200) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (residues 1 to 3200) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (residues 1 to 3200) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (residues 1 to 3200) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (residues 1 to 3200) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (residues 1 to 3200) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (residues 1 to 3200) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (residues 1 to 3200) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (residues 1 to 3200) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (residues 1 to 3200) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (residues 1 to 3200) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (residues 1 to 3200) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (residues 1 to 3200) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (residues 1 to 3200) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (residues 1 to 3200) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (residues 1 to 3200) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (residues 1 to 3200) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (residues 1 to 3200) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (residues 1 to 3200) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (residues 1 to 3200) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (residues 1 to 3200) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (residues 1 to 3200) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. The reference sequence is identical to AFH07259. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## Method: conceptual translation. FEATURES Location/Qualifiers source 1..3200 /organism="Drosophila melanogaster" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" Protein 1..3200 /product="Ca[2+]-channel protein alpha[[1]] subunit T, isoform E" /name="CG15899 gene product from transcript CG15899-RE" /note="CG15899-PE; Ca-alpha1T-PE; Ca1G" /calculated_mol_wt=353354 Region 300..623 /region_name="Ion_trans" /note="Ion transport protein; pfam00520" /db_xref="CDD:459842" Region 1225..1477 /region_name="Ion_trans" /note="Ion transport protein; pfam00520" /db_xref="CDD:459842" Region 2157..2430 /region_name="Ion_trans" /note="Ion transport protein; pfam00520" /db_xref="CDD:459842" Region 2474..2710 /region_name="Ion_trans" /note="Ion transport protein; pfam00520" /db_xref="CDD:459842" CDS 1..3200 /gene="Ca-alpha1T" /locus_tag="Dmel_CG15899" /gene_synonym="alpha1T; alphaIT; ca-alpha1T; Ca-alphaT-RC; Ca1G; Caalpha1T; cat; CG12544; CG15899; CG4222; DmalphaG; Dmca1G; Dmel\CG15899; T-type Ca[2+]" /coded_by="NM_001258616.1:401..10003" /db_xref="FLYBASE:FBpp0293152" /db_xref="GeneID:31550" /db_xref="FLYBASE:FBgn0264386" ORIGIN 1 mlpqpaaava tatttttqsa tsatstaats aaaaaarngq rrrvaaateg cnsnignsns 61 klssntttnt tkrvsqmhsn eeppmtvivd ggggsnvsvs ggsshrrgsq rlrktssssa 121 naksasanpt ertssgqrss hrqtsnasdg ggssrrryqg kehhdrrdrq drqdrqdrqe 181 rsdrherrdr rdeqqaarrr tgrrhsgass lsdaaaataa grsrsrgggr tggavssstg 241 sscngscssd dgdsshtsss ssssssgepn lpypgfpeis iraltqytrp rnwclmlitn 301 pwfervsilv illncitlgm yqpcvddacv tnrckilqif ddiifaffal emtikmvamg 361 icgkntylad swnrldffiv laglleyvmh venlnltair tirvlrplra inripsmril 421 vmllldtlpm lgnvlllcff vffifgiigv qlwegilrqr cslmrtegmv ypltlsqyye 481 fskdqdyics tpndsgmhlc gnfppyrigs lvcneeaklf dfneptntsc vnwnqyyttc 541 kqsgenpfqg tisfdnigma wvaiflvisl egwtdimyyv qdahsfwdwi yfvllivigs 601 ffminlclvv iatqfsetkk remermrqer arytststla sstnnsepat cyaeivkyia 661 hlwrrfkrrm lkkyqrqqrk egllpnadnl tfspsrikch hpkcpkysnr kpssiqdqmi 721 tvmvplnsas nninnnnnnn snssnhngsg nhtaagggnn nnnnnnnnaa scttvalvng 781 ingsaasvtm ssahhqqhql lqhqqqqhqn qqqqqqqqqh sssdnteqsl apdglprsss 841 lkkstahhql kpegsaaeqk tillkfpqqm idseqlilql gnlgkshpct sgflspptsa 901 srrpsvmfne yvllhtppal nadpatagtt ttvaptvatv agtaaaaaaa aatgsgsgnn 961 nhqnggasgg agtggtteks nifstekmtq agdgsiwqvn lpqtigtian pyadcselgi 1021 hdamtcqell afsvafsaal ptgqstlesf ytslarcdph taealrahhk prsvptgqnq 1081 ttpgaegatv mvastagdtg qtlqpstvsa vvggtidsha anhrrkehhq qshhhhnnnn 1141 ttshsrnyrs rqgqgnsrmr epraptgnym edyaccydly qnalsplder prqrspttrc 1201 lisvyrcmsr vcswirryir rlvehkyfqq gillailint lsmgieyhnq ppeltaivet 1261 snvvfsgifa vemllkvvae gpfryiangf nvfdgiivil saieicqtfm gngtggggsg 1321 lsvlrtfrll rilklvrfmp nlrrqlfvml rtmdnvavff sllvlfifif silgmylfgg 1381 kfckfldesg lerectcpei isrhpqcecd rkhfnnilwa tvtvfqiltq edwnvvlfng 1441 mektshwaal yfvalmtfgn yvlfnllvai lvegfssern errereqrel vkklreetla 1501 enysdgmyde srseadsstt ndsyyevrnr wrsaedvrkl qdsveliiea ksnmhrqrll 1561 qpthdyqine lpassaapsa sgtsgasapg drerdrdrdr drerdrdrdr erdreagggg 1621 keegaqhakp rgglkktysi kerrseaprl skirlardpp iitttaatpq dspsttlepg 1681 msfrqwgdme ppsppspsll rppniftggq rsldegipsi dlippspvls hkplnilnas 1741 qlgvgmgggv pstagssssm hsviiddisk sssstaaatp iyvptissta daqsqshsln 1801 dvsvgsspgg eipatgmsrn antgastsgs ssserlplap ppqqgsfkqr lrrgsskkrr 1861 asalalatdd nparrtldnq arrtqdeeee qqqlnnggdn scllrnsnav vsgsssgtke 1921 tnrlspqnsi rrlsntlsig sgpvgsrras acifnsqvyq nlnqppklrp gsgqrrmssi 1981 elafsktshl nlhnleanrk slsytnskmd ldkwnksygn lnepdnmlqq ymeardkrkn 2041 sishynlkkr leekelqqlq qlhqqqllqq rqdsfssttq qqqqqlqqhr lskdqqqlam 2101 qphsmvpggg erysklkmli eqltpkhftt eredyslyif pednrfrqic twfvnqkwfd 2161 nvvllfialn citlamerpn ippssterlf latanyvftv vftvemfikv vatgmfyghd 2221 ayftsgwnim dgslvtisii dllmslises sprifgilrv frllrslrpl rvinrapglk 2281 lvvqtllssl rpignivlic ctffiifgil gvqlfkgtfy ycegenikgv rnadecrrip 2341 gnvwtnrkyn fddlgkalms lfvlssrdgw vnimytglda vgvdqqpivn ynewrllyfi 2401 afillvgffv lnmfvgvvve nfhrcreeqe keekirraak ralqmekkrr rmheppyytn 2461 ysptrmfvhn vvtskyfdla iaaviglnvv tmameyykmp sglkyalkif nyfftavfil 2521 eanmklvalg wklylkdrwn qldvgivlls ivgivleele tnthqiipin ptiirvmrvl 2581 riarvlkllk mangiralld tvmqalpqvg nlgllffllf fifaalgvel fgrlecsdei 2641 pcqglgehah fanfgmaflt lfrvatgdnw ngimkdtlrd ncddaadcvr nccvssviap 2701 iffvifvlma qfvlvnvvva vlmkhleesh kqmedeldme velerelvre qefaqeqklc 2761 qqlaeaqska aapprplakv kslpknfiys tpsldkkfpa vsgvnnpslt ssaatnlnqv 2821 atagsggaap gavpagsgag prrqtvqyfq qppqsmlggl slaemggtlt pqalgarlge 2881 pfgggggnks gprrqsywqi npirkrgvls kersldeqai rrrnleakrt scdslpwggd 2941 aldcrrgtif eslesdgggv ggggsggggg glgggvsydl rsvrsadvgh semdgdvsls 3001 vvsalvpsvt tplppplslp ivtptstptp lqlpmpmpmp mahppprrpf gwsqsvdqgc 3061 lrsnlllsvp rsmpprsrsg stkqlfkqqa ldedadmden slllptaagg gsgpgsvavi 3121 asssldlpdq sgsskqilpd ialgvsksds sdilriiser rrmdqreqre peqdqdneae 3181 drdsdykell lvkspqssmd