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LOCUS NP_001245544 3180 aa linear INV 26-DEC-2023 melanogaster]. ACCESSION NP_001245544 VERSION NP_001245544.1 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 DBSOURCE REFSEQ: accession NM_001258615.1 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (residues 1 to 3180) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (residues 1 to 3180) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (residues 1 to 3180) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (residues 1 to 3180) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (residues 1 to 3180) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (residues 1 to 3180) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (residues 1 to 3180) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (residues 1 to 3180) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (residues 1 to 3180) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (residues 1 to 3180) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (residues 1 to 3180) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (residues 1 to 3180) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (residues 1 to 3180) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (residues 1 to 3180) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (residues 1 to 3180) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (residues 1 to 3180) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (residues 1 to 3180) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (residues 1 to 3180) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (residues 1 to 3180) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (residues 1 to 3180) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (residues 1 to 3180) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (residues 1 to 3180) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (residues 1 to 3180) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. The reference sequence is identical to AFH07258. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## Method: conceptual translation. FEATURES Location/Qualifiers source 1..3180 /organism="Drosophila melanogaster" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" Protein 1..3180 /product="Ca[2+]-channel protein alpha[[1]] subunit T, isoform D" /name="CG15899 gene product from transcript CG15899-RD" /note="CG15899-PD; Ca-alpha1T-PD; Ca1G" /calculated_mol_wt=351212 Region 300..623 /region_name="Ion_trans" /note="Ion transport protein; pfam00520" /db_xref="CDD:459842" Region 1222..1457 /region_name="Ion_trans" /note="Ion transport protein; pfam00520" /db_xref="CDD:459842" Region 2137..2410 /region_name="Ion_trans" /note="Ion transport protein; pfam00520" /db_xref="CDD:459842" Region 2454..2690 /region_name="Ion_trans" /note="Ion transport protein; pfam00520" /db_xref="CDD:459842" CDS 1..3180 /gene="Ca-alpha1T" /locus_tag="Dmel_CG15899" /gene_synonym="alpha1T; alphaIT; ca-alpha1T; Ca-alphaT-RC; Ca1G; Caalpha1T; cat; CG12544; CG15899; CG4222; DmalphaG; Dmca1G; Dmel\CG15899; T-type Ca[2+]" /coded_by="NM_001258615.1:401..9943" /db_xref="FLYBASE:FBpp0293151" /db_xref="GeneID:31550" /db_xref="FLYBASE:FBgn0264386" ORIGIN 1 mlpqpaaava tatttttqsa tsatstaats aaaaaarngq rrrvaaateg cnsnignsns 61 klssntttnt tkrvsqmhsn eeppmtvivd ggggsnvsvs ggsshrrgsq rlrktssssa 121 naksasanpt ertssgqrss hrqtsnasdg ggssrrryqg kehhdrrdrq drqdrqdrqe 181 rsdrherrdr rdeqqaarrr tgrrhsgass lsdaaaataa grsrsrgggr tggavssstg 241 sscngscssd dgdsshtsss ssssssgepn lpypgfpeis iraltqytrp rnwclmlitn 301 pwfervsilv illncitlgm yqpcvddacv tnrckilqif ddiifaffal emtikmvamg 361 icgkntylad swnrldffiv laglleyvmh venlnltair tirvlrplra inripsmril 421 vmllldtlpm lgnvlllcff vffifgiigv qlwegilrqr cslmrtegmv ypltlsqyye 481 fskdqdyics tpndsgmhlc gnfppyrigs lvcneeaklf dfneptntsc vnwnqyyttc 541 kqsgenpfqg tisfdnigma wvaiflvisl egwtdimyyv qdahsfwdwi yfvllivigs 601 ffminlclvv iatqfsetkk remermrqer arytststla sstnnsepat cyaeivkyia 661 hlwrrfkrrm lkkyrlykyq rqqrkegllp nadnltfsps rikchhpkcp kysnrkpssi 721 qdqmitvmvp lnsasnninn nnnnnsnssn hngsgnhtaa gggnnnnnnn nnnaascttv 781 alvngingsa asvtmssahh qqhqllqhqq qqhqnqqqqq qqqqhsssdn teqslapdgl 841 prssslkkst ahhqlkpegs aaeqktillk fpqqmidseq lishpctsgf lspptsasrr 901 psvmfneyvl lhtppalnad patagttttv aptvatvagt aaaaaaaaat gsgsgnnnhq 961 nggasggagt ggtteksnif stekmtqagd gsiwqvnlpq tigtianpya dcselgihda 1021 mtcqellafs vafsaalptg qstlesfyts larcdphtae alrahhkprs vptgqnqttp 1081 gaegatvmva stagdtgqtl qpstvsavvg gtidshaanh rrkehhqqsh hhhnnnntts 1141 hsrnyrsrqg qgnsrmrepr aptgnymedy accydlyqna lsplderprq rspttrclis 1201 vyrcmsrvcs wirryirrlv ehkyfqqgil lailintlsm gieyhnqppe ltaivetsnv 1261 vfsgifavem llkvvaegpf ryiangfnvf dgiivilsai eicqtfmgng tggggsglsv 1321 lrtfrllril klvrfmpnlr rqlfvmlrtm dnvavffsll vlfififsil gmnlfgckfc 1381 ekvngemicd rknfdsllwa lvtvfqiltq edwnvvlfng mektshwaal yfvalmtfgn 1441 yvlfnllvai lvegfssern errereqrel vkklreetla enysdgmyde srseadsstt 1501 ndsyyevrnr wrsaedvrkl qdsveliiea ksnmhrqrll qpthdyqine lpassaapsa 1561 sgtsgasapg drerdrdrdr drerdrdrdr erdreagggg keegaqhakp rgglkktysi 1621 kerrseaprl skirlardpp iitttaatpq dspsttlepg msfrqwgdme ppsppspsll 1681 rppniftggq rsldegipsi dlippspvls hkplnilnas qlgvgmgggv pstagssssm 1741 hsviiddisk sssstaaatp iyvptissta daqsqshsln dvsvgsspgg eipatgmsrn 1801 antgastsgs ssserlplap ppqqgsfkqr lrrgsskkrr asalalatdd nparrtldnq 1861 arrtqdeeee qqqlnnggdn scllrnsnav vsgsssgtke tnrlspqnsi rrlsntlsig 1921 sgpvgsrras acifnsqvyq nlnqppklrp gsgqrrmssi elafsktshl nlhnleanrk 1981 slsytnskmd ldkwnksygn lnepdnmlqq ymeardkrkn sishynlkkr leekelqqlq 2041 qlhqqqllqq rqdsfssttq qqqqqlqqhr lskdqqqlam qphsmvpggg erysklkmli 2101 eqltpkhftt eredyslyif pednrfrqic twfvnqkwfd nvvllfialn citlamerpn 2161 ippssterlf latanyvftv vftvemfikv vatgmfyghd ayftsgwnim dgslvtisii 2221 dllmslises sprifgilrv frllrslrpl rvinrapglk lvvqtllssl rpignivlic 2281 ctffiifgil gvqlfkgtfy ycegenikgv rnadecrrip gnvwtnrkyn fddlgkalms 2341 lfvlssrdgw vnimytglda vgvdqqpivn ynewrllyfi afillvgffv lnmfvgvvve 2401 nfhrcreeqe keekirraak ralqmekkrr rmheppyytn ysptrmfvhn vvtskyfdla 2461 iaaviglnvv tmameyykmp sglkyalkif nyfftavfil eanmklvalg wklylkdrwn 2521 qldvgivlls ivgivleele tnthqiipin ptiirvmrvl riarvlkllk mangiralld 2581 tvmqalpqvg nlgllffllf fifaalgvel fgrlecsdei pcqglgehah fanfgmaflt 2641 lfrvatgdnw ngimkdtlrd ncddaadcvr nccvssviap iffvifvlma qfvlvnvvva 2701 vlmkhleesh kqmedeldme velerelvre qefaqeqklc qqlaeaqska aapprplakv 2761 kslpknfiys tpsldkkfpa vsgvnnpslt ssaatnlnqv atagsggaap gavpagsgag 2821 prrqtvqyfq qppqsmlggl slaemggtlt pqalgarlge pfgggggnks gprrqsywqi 2881 npirkrgvls kersldeqai rrrnleakrt scdslpwggd aldcrrgtif eslesdgggv 2941 ggggsggggg glgggvsydl rsvrsadvgh semdgdvsls vvsalvpsvt tplppplslp 3001 ivtptstptp lqlpmpmpmp mahppprrpf gwsqsvdqgc lrsnlllsvp rsmpprsrsg 3061 stkqlfkqqa ldedadmden slllptaagg gsgpgsvavi asssldlpdq sgsskqilpd 3121 ialgvsksds sdilriiser rrmdqreqre peqdqdneae drdsdykell lvkspqssmd