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LOCUS NP_001162729 2902 aa linear INV 26-DEC-2023 ACCESSION NP_001162729 VERSION NP_001162729.1 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 DBSOURCE REFSEQ: accession NM_001169258.2 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (residues 1 to 2902) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (residues 1 to 2902) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (residues 1 to 2902) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (residues 1 to 2902) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (residues 1 to 2902) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (residues 1 to 2902) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (residues 1 to 2902) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (residues 1 to 2902) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (residues 1 to 2902) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (residues 1 to 2902) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (residues 1 to 2902) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (residues 1 to 2902) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (residues 1 to 2902) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (residues 1 to 2902) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (residues 1 to 2902) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (residues 1 to 2902) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (residues 1 to 2902) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (residues 1 to 2902) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (residues 1 to 2902) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (residues 1 to 2902) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (residues 1 to 2902) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (residues 1 to 2902) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (residues 1 to 2902) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. The reference sequence is identical to ACZ95264. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## Method: conceptual translation. FEATURES Location/Qualifiers source 1..2902 /organism="Drosophila melanogaster" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" Protein 1..2902 /product="tenascin accessory, isoform G" /name="CG42338 gene product from transcript CG42338-RG" /note="CG42338-PG; Ten-a-PG; Teneurin-a; central-body-defect; teneurin; tenascin-like molecule accessory; central body defect" /calculated_mol_wt=317633 Region 461..484 /region_name="EGF_2" /note="EGF-like domain; pfam07974" /db_xref="CDD:400365" Region 527..549 /region_name="EGF_2" /note="EGF-like domain; pfam07974" /db_xref="CDD:400365" Region 558..581 /region_name="EGF_2" /note="EGF-like domain; pfam07974" /db_xref="CDD:400365" Region <559..670 /region_name="C_rich_MXAN6577" /note="MXAN_6577-like cysteine-rich domain; NF041328" /db_xref="CDD:469225" Region 687..716 /region_name="EGF_CA" /note="Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the...; cd00054" /db_xref="CDD:238011" Region 723..749 /region_name="acid_disulf_rpt" /note="acidic double-disulfide repeat; NF033662" /db_xref="CDD:411265" Region 1137..1442 /region_name="NHL" /note="NHL repeat unit of beta-propeller proteins; cl18310" /db_xref="CDD:302697" Region 1190..1236 /region_name="NHL repeat" /note="NHL repeat [structural motif]" /db_xref="CDD:271320" Region 1260..1302 /region_name="NHL repeat" /note="NHL repeat [structural motif]" /db_xref="CDD:271320" Region 1317..1362 /region_name="NHL repeat" /note="NHL repeat [structural motif]" /db_xref="CDD:271320" Region 1379..1412 /region_name="NHL repeat" /note="NHL repeat [structural motif]" /db_xref="CDD:271320" Region <1633..>1763 /region_name="RHS_core" /note="RHS element core protein; NF041261" /db_xref="CDD:469161" Region <1881..2530 /region_name="RhsA" /note="Uncharacterized conserved protein RhaS, contains 28 RHS repeats [General function prediction only]; COG3209" /db_xref="CDD:442442" Region 2787..2864 /region_name="Tox-GHH" /note="GHH signature containing HNH/Endo VII superfamily nuclease toxin; pfam15636" /db_xref="CDD:464783" CDS 1..2902 /gene="Ten-a" /locus_tag="Dmel_CG42338" /old_locus_tag="Dmel_CG12720" /old_locus_tag="Dmel_CG15733" /old_locus_tag="Dmel_CG32659" /gene_synonym="1.2; cbd; CG11270; CG12720; CG15733; CG18182; CG2578; CG2590; CG32659; CG42338; Dmel\CG42338; Dmtena; DmtenA; ten-a; Ten11A; tenA; tenA(AT)[[14]]; ten[a]; Ten[a]" /coded_by="NM_001169258.2:303..9011" /db_xref="FLYBASE:FBpp0289438" /db_xref="GeneID:32183" /db_xref="FLYBASE:FBgn0267001" ORIGIN 1 mtmksmkysd cdtimdgynp vppplprrvp pvrniyaepf ahepnhssrf hidkrcqhrc 61 swkclsiali fvsvvltaml ayfaavssmk pnmdstncil vqdvksqphd lrgglaksne 121 kgvatafpte esiqtstsdh gqnghglmnp sagsggsnsg iqqqlllqqq qphsinqplt 181 pldatnthlq dhhqltygga lpggvggigm sgggimnggl ngglggqlmq qpggglnghh 241 hqalqpqlgg vvelkefnea yhatipayqf wtlefrnkhp afirfnftlp wgahfavysr 301 rnvapsvtqh dfvefikggr ldshlrhrrs sanatttgqd melyrqdkdq saesaqdqds 361 eqdesrsfds sesydvetpl dtakqhlqri gkpqshwvnk rsagdglpal dvdamtvnvs 421 llqyldtglw fisvyndelv ahsvsllaee aegvsttcpn dcsgrgscyl gkcdcidgyq 481 gvdcsksvcp vlcsahghyg ggvchceegw kgaecdipvg ecevpncssh grciegechc 541 ergwkgpycd qhdcldplcs ghgtcvagqc yckagwqged cgtidqqvyq clpgcsehgt 601 ydletgqcvc erhwtgpdcs qavcsldcgr ngvcesgkcr cnsgwtgnlc dqlpcdsrcs 661 ehgqckngtc vcsqgwngrh ctlpgcengc srhgqctlen geyrcdcieg wagrdcsial 721 elnckdnidn dgdgmtdcsd seccshpacs ehimclssnd pvevllrkqp psvtasfyqr 781 vkflieensv qsyahmdeys enrvsvmrgq vitpqglgiv girvsvdrds rfgftltrqg 841 gwfdvlvngg gavtlqfqrs pfrpltrtvf vpwnrivvlp pvqmqlsddd ettsrnikva 901 plnpaltfln sihyhtadea ndaskvcmdh dheklrpqli stwmpngvga mpgkrvifae 961 tqivqesiqi pgsdlhltyq ssqasgylsi vrmrltgeti pptlthvhvg veiegalhvk 1021 tyeadpslvh tfawnkrnvy rqkvygvtva risvgyqhst cqspvwiaqt aklqgydvdi 1081 sdiggwgldi hhhynfhegi lqkgdgstlh mkeyprtvkv vmgtglqrpl tcpdycngva 1141 kdaklltpia latgpdgsly vgdfnlvrri tpdgkvytil qlsatqvsyq yylavspadg 1201 hlyisdperh qilrlvrlek vkdpsinsdp vvgsgqrcip gdegncgdgg pallarlshp 1261 kglaiaadrt myiadgtnir avdpkgviht lighhghhnh wspapcsgtl manqaqlqwp 1321 tglalspldg slhfiddrlv lrltsdmkir vvagtplhcs nggqdgrvnk tgadnvlgtv 1381 lamafspfgn lyiadsdsrr vnsirvvdta gnmryfagkq egtgsqtcdc aigggsngsa 1441 tnsgvggagg saysttvnpt rpnggttptt psggngngng ngssatssgg svggsngsgg 1501 ganggacica ggialstgtg sssgsngggt lasivgsggl mstgpttttt vllgakttaa 1561 gigaatlndd gtlsnaetll ssnarfqais aiavaqdgvi nvadqgslhv lalehylpsh 1621 dengefhipf ppsseiyvfn rygqhvatkd ltsgktrysf lyskntsfgr lstvtdasgn 1681 kiqflrdysn vvssientqd hkseiqingi gimtklsekg rqeieldyds ntgllnsrss 1741 ggetyiyqyd efgrvtgmil psgeivrits qladsqgltv yvhasveslf sreriagean 1801 ellvlggvrs tflkrgqaha daelkanntl vihgdngvvv easavarhpl leaalpveae 1861 mlamwshqsv tmgegltnsm ysvyslvgdv rnpqqtlnre iwvnqsrvig vefdqftnre 1921 tfydarrtpi livaydqsgl pksyyptngy pvnitydrfn rvegwawgpa elkysydrhg 1981 llseitsqqd givsfvyndw nlvseiglas qrkfvlqydd agglrhvvlp sgtrhsfsmq 2041 tsigfircty tppgstrayl qhyshagall qtilpgdgar ivyrynaagq ltevvhgdgr 2101 sefqyneatg mpstvshter eleyrwdfey aagllaeeri dyvaktglsn akfsyeydsq 2161 lrvvalqgri ggqslptqaf aydprtgrps ligqfrfsqp aqnqtqlhdg tasftrtvdg 2221 rfqtqrmala ihrlevfrme fsygvhgris qtrtytrnma vnsytnvkny twdcdgqlvg 2281 veaqepwgfr yddngnllsl tyrgntipme ynaqdrivkf gegqykydar glvaqnaree 2341 rfhyntqgll vraskrgrfd vryyydhlkr lttrkdnfgn vtqffytnqq rpyevsqiys 2401 prdgklmslt yddvghliya qvyrhkyyva tdqsgtplml fnqygegire imrspfghiv 2461 ydsnpylylp idfcggildq vttlvhmgdg rvydpligqw mspdwqrvae riitptrlhl 2521 yrfngndpin vgherhyped faawmrtlgy nvgnlvpqla rdlwqppalw grppanpval 2581 nlrrpfdnip tmavesgfla hlnvrrmsdf eqlsapprsa lkcdvmdpsp ktigsdtepp 2641 fgkgivvsrt adgqaivssv paanaiyrdv ytsvfnrskl lpftfvvhna qqdsfffvke 2701 dawratedrq qlkrlqgqvn ttfheitrea tvgsgpagaa nggagsssss ssssgggsss 2761 ntgnyldvki hgahaiinlr ygttvakeqq rlmhhaklta vrkawhreke alrsglttal 2821 ewsqqetdei lkqsyannye geyihdvnly pelaedpyni kfvkkkgatg gaagvpnsrr 2881 rrrrstdliq eeeeelhrea dc