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LOCUS NP_001138159 3203 aa linear INV 26-DEC-2023 ACCESSION NP_001138159 VERSION NP_001138159.2 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 DBSOURCE REFSEQ: accession NM_001144687.2 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (residues 1 to 3203) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (residues 1 to 3203) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (residues 1 to 3203) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (residues 1 to 3203) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (residues 1 to 3203) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (residues 1 to 3203) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (residues 1 to 3203) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (residues 1 to 3203) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (residues 1 to 3203) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (residues 1 to 3203) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (residues 1 to 3203) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (residues 1 to 3203) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (residues 1 to 3203) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (residues 1 to 3203) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (residues 1 to 3203) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (residues 1 to 3203) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (residues 1 to 3203) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (residues 1 to 3203) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (residues 1 to 3203) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (residues 1 to 3203) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (residues 1 to 3203) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (residues 1 to 3203) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (residues 1 to 3203) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. The reference sequence is identical to ACL82891. On Jul 15, 2014 this sequence version replaced NP_001138159.1. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## Method: conceptual translation. FEATURES Location/Qualifiers source 1..3203 /organism="Drosophila melanogaster" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" Protein 1..3203 /product="rugose, isoform M" /name="CG44835 gene product from transcript CG44835-RM" /note="CG44835-PM; rg-PM; facetious; pebbled; drosophila A kinase anchor protein; A-kinase anchoring protein; A kinase anchor protein 550; rugose" /calculated_mol_wt=358424 Region 210..358 /region_name="Laminin_G_3" /note="Concanavalin A-like lectin/glucanases superfamily; pfam13385" /db_xref="CDD:463865" Region 422..916 /region_name="DUF4704" /note="Neurobeachin/BDCP, DUF4704 alpha solenoid region; pfam15787" /db_xref="CDD:464870" Region <1226..1600 /region_name="PspC_subgroup_2" /note="pneumococcal surface protein PspC, LPXTG-anchored form; NF033839" /db_xref="CDD:468202" Region 2209..2390 /region_name="DUF1088" /note="Neurobeachin-like, DUF1088; pfam06469" /db_xref="CDD:461925" Region 2414..2511 /region_name="PH_BEACH" /note="PH domain associated with Beige/BEACH; pfam14844" /db_xref="CDD:434260" Region 2543..2819 /region_name="Beach" /note="Beige/BEACH domain; pfam02138" /db_xref="CDD:460459" Region 2920..3192 /region_name="NBCH_WD40" /note="Neurobeachin beta propeller domain; pfam20426" /db_xref="CDD:466575" Region 2942..2978 /region_name="WD40 repeat" /note="WD40 repeat [structural motif]" /db_xref="CDD:293791" Region 2984..3035 /region_name="WD40 repeat" /note="WD40 repeat [structural motif]" /db_xref="CDD:293791" Region 3040..3075 /region_name="WD40 repeat" /note="WD40 repeat [structural motif]" /db_xref="CDD:293791" Region 3087..3117 /region_name="WD40 repeat" /note="WD40 repeat [structural motif]" /db_xref="CDD:293791" Region 3122..3157 /region_name="WD40 repeat" /note="WD40 repeat [structural motif]" /db_xref="CDD:293791" CDS 1..3203 /gene="rg" /locus_tag="Dmel_CG44835" /old_locus_tag="Dmel_CG15464" /old_locus_tag="Dmel_CG6775" /gene_synonym="AKAP; Akap550; CG15464; CG15466; CG44835; CG6775; DAKAP550; Dmel\CG44835; fas; Rg" /coded_by="NM_001144687.2:1089..10700" /db_xref="FLYBASE:FBpp0310995" /db_xref="GeneID:44531" /db_xref="FLYBASE:FBgn0266098" ORIGIN 1 madimrppys eikrpdeivr mttadnlkfa vliglievgq vtnrevvntv lhllvggefd 61 melnfviqda qnikhmlell dhcppnlqae iwsvfiailr ksvrnlqact dvgliehvlv 121 rlqrsetvva dlliemlgvl asysitvkel kllfgtmkat ngkwprhsak llnvlrqmph 181 rngpdvffsf pgrkgsamvl pplakwpyen gftfttwfrl dpinsvnier ekpylycfkt 241 skgvgytahf vgnclvltsm kvkgkgfqhc vkyefqprkw ymiaivyiyn rwtkseikcl 301 vngqlasste mawfvstndp fdkcyigatp eldeervfcg qmsaiylfse alttqqicam 361 hrlgpgyksq frfdnecyln lpdnhkrvly dgklsnaivf mynpvatdgq lclqsspkgn 421 vsyfvhtpha lmlqdvkavv thsihctlns iggiqvlfpl fsqldmaheg lgdikrdptl 481 cskllgfice lvetsqtvqq hmiqnrgflv isfmlqrssr ehltlevlgs flnltkylvt 541 clsansdlll kqlfcfsflt wqlldhvlfn palwiytpan vqarlysyla teflsdtqiy 601 snvrrvstvl qtvhtlkyyy wvvnpraksg iipkgldgpr paqkdilair ayillflkql 661 imigngvked elqsilnylt tmhedenlhd vlqmlislms ehpssmvpaf dvkhgvrsif 721 kllaaesqli rlqalkllgf flsrsthkrk ydvmsphnly tllaerllly eeslslptyn 781 vlyeimtehi sqqilytrhp epeshyrlen pmilkvvatl irqskqtesl idvkklflqd 841 mtllcnsnre nrrtvlqmsv wqewliamay ihpksseeqk isdmvyslfr mllhhaikhe 901 yggwrvwvdt laivhskvsy eefklqfaqm yehyerqrtd nitdpalrqa rpistisgwe 961 reelhqqqng gsaaavatnq taavkgsvsi asledvppvv eeeveelele eveiqegpit 1021 eeteqksvia nisdvyneql ktdatcngnl edvkeeepvq qqigdlekqp epstplgalr 1081 etlqlgddmd veelelatak dalnaeqhvs rvlqaseaal ndckmavddv lqesssvlkd 1141 eeielavnev vqgvlnnekk tqsqdnkdnk eqpgeqdvnv sllnsknlln nnnnnnnnsp 1201 sptpttatat aeteaetevn aneivsstea pkaetetsva pevetpetak pspivpspvl 1261 atnqktedaa nklnnnekla eisaspeppi vvetpeadll qlsdsetkpn keteaedsva 1321 lavrdiveql idkvidatea esasetktet nnneipkkek qtseepedve taetlaaaak 1381 eivqevveaa lvmvqeestq ekpekganse eekneigkee illqleekpa stevqetkie 1441 gdlkkpedpk ghssvepktp nleepkpqet eqqksqevae elpqkpeeqv vaivnqvldt 1501 lvddtvkava aeqttqtspa peeqspqila mespatsvrv kptevdsttq ttpkneagss 1561 llveqvqqvl qeddaqqsag mtiededysn qqaaaavena nssqldanhy gpgnpeskqq 1621 qqrsksgstr pmfspgptrp pfripefkws yihqrllsdv lfsletdiqv wrshstksvl 1681 dfvnssenai fvvntvhlis qladnliiac ggllpllasa tspnseldvl eptqgmplev 1741 avsflqrlvn madvlifats lnfgeleaek nmssggilrq clrlvctcav rncleckert 1801 rynvgalard vpgaahlqal irgaqaspkn ivesitgqls pvkdpekllq dmdvnrlrav 1861 iyrdveetkq aqflslaivy fisvlmvsky rdileppaep qiqrqspvlq rtaggggrqi 1921 qdsdyeiivv dennpsvlad ndshssgpps iksvdsdvgs lnmnstenev pevessseil 1981 iddhkpshsn deswtdvnln edaavqaasa givvglvdnr gnvisdkhdp shhnqqqqqq 2041 agiigqqqqh gslghsergd kpdseisvvr vpdgyggags gggvnsgqgq gvpsnqrprp 2101 eelpmkapal vaqlplttps reasltqkle ialgpvcpll reimvdfapf lsktlvgshg 2161 qellmegkgl ttfknshsvv elvmllcsqe wqnslqkhag lafielineg rllshamkdh 2221 ivrvaneaef ilnrmraddv lkhadfesqc aqtllerree ermcdhlita arrrdnvias 2281 rllekvrnim cnrhgawgds sstssggaiv gavqkspywk ldaweddarr rkrmvqnprg 2341 sshpqatlka alenggpeda ilqtrdefht qiavsrthps gqhngelldd aelliedrel 2401 dldltgpvni stkarliapg lvapgtvsit stemffevde ehpefqkidg evlkycdhlh 2461 gkwyfsevra ifsrryllqn valeiflasr tsilfafpdq htvkkvikal prvgvgikyg 2521 ipqtrrasmm sprqlmrnsn mtqkwqrrei snfeylmfln tiagrtyndl nqypifpwvl 2581 tnyeskdldl slpsnyrdls kpigalnpsr rayfeeryes wdsdtippfh ygthystaaf 2641 tlnwlvrvep fttmflalqg gkfdypdrlf ssvslswknc qrdtsdvkel ipewyflpem 2701 fynssgyrlg hredgalvdd ielppwaksp eefvrinrma lesefvscql hqwidlifgy 2761 kqrgpeaira tnvfyyltye gsvdldgvld pvmreavenq irnfgqtpsq llmephpprs 2821 samhlspmmf sampedlcqm lkfyqnspvi hisantypql slpsvvtvta ghqfavnrwn 2881 cnytasvqsp syaespqspg snqpltidpv lavhgtnnns naasrrhlgd nfsqmlkirs 2941 ncfvttvdsr fliacgfwdn sfrvfateta kivqivfghf gvvtcmarse cnitsdcyia 3001 sgsadctvll whwnartqsi vgegdvptpr atltgheqav tsvvisaelg lvvsgssngp 3061 vlihttfgdl lrsldppaef hspelitmsr egfivinydk gnvaayting kklrhethnd 3121 nlqcmllsrd geylmtagdr givevwrtfn laplyafpac nagirslalt hdqkyllagl 3181 stgsiivfhi dfnrwhheyq qry