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LOCUS NP_001138157 3400 aa linear INV 26-DEC-2023 ACCESSION NP_001138157 VERSION NP_001138157.2 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 DBSOURCE REFSEQ: accession NM_001144685.2 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (residues 1 to 3400) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (residues 1 to 3400) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (residues 1 to 3400) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (residues 1 to 3400) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (residues 1 to 3400) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (residues 1 to 3400) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (residues 1 to 3400) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (residues 1 to 3400) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (residues 1 to 3400) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (residues 1 to 3400) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (residues 1 to 3400) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (residues 1 to 3400) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (residues 1 to 3400) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (residues 1 to 3400) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (residues 1 to 3400) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (residues 1 to 3400) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (residues 1 to 3400) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (residues 1 to 3400) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (residues 1 to 3400) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (residues 1 to 3400) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (residues 1 to 3400) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (residues 1 to 3400) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (residues 1 to 3400) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. The reference sequence is identical to ACL82890. On Jul 15, 2014 this sequence version replaced NP_001138157.1. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## Method: conceptual translation. FEATURES Location/Qualifiers source 1..3400 /organism="Drosophila melanogaster" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" Protein 1..3400 /product="rugose, isoform O" /name="CG44835 gene product from transcript CG44835-RO" /note="CG44835-PO; rg-PO; facetious; pebbled; drosophila A kinase anchor protein; A-kinase anchoring protein; A kinase anchor protein 550; rugose" /calculated_mol_wt=377188 Region 210..358 /region_name="Laminin_G_3" /note="Concanavalin A-like lectin/glucanases superfamily; pfam13385" /db_xref="CDD:463865" Region 629..1113 /region_name="DUF4704" /note="Neurobeachin/BDCP, DUF4704 alpha solenoid region; pfam15787" /db_xref="CDD:464870" Region <1423..1797 /region_name="PspC_subgroup_2" /note="pneumococcal surface protein PspC, LPXTG-anchored form; NF033839" /db_xref="CDD:468202" Region 2406..2587 /region_name="DUF1088" /note="Neurobeachin-like, DUF1088; pfam06469" /db_xref="CDD:461925" Region 2611..2708 /region_name="PH_BEACH" /note="PH domain associated with Beige/BEACH; pfam14844" /db_xref="CDD:434260" Region 2740..3016 /region_name="Beach" /note="Beige/BEACH domain; pfam02138" /db_xref="CDD:460459" Region 3117..3389 /region_name="NBCH_WD40" /note="Neurobeachin beta propeller domain; pfam20426" /db_xref="CDD:466575" Region 3139..3175 /region_name="WD40 repeat" /note="WD40 repeat [structural motif]" /db_xref="CDD:293791" Region 3181..3232 /region_name="WD40 repeat" /note="WD40 repeat [structural motif]" /db_xref="CDD:293791" Region 3237..3272 /region_name="WD40 repeat" /note="WD40 repeat [structural motif]" /db_xref="CDD:293791" Region 3284..3314 /region_name="WD40 repeat" /note="WD40 repeat [structural motif]" /db_xref="CDD:293791" Region 3319..3354 /region_name="WD40 repeat" /note="WD40 repeat [structural motif]" /db_xref="CDD:293791" CDS 1..3400 /gene="rg" /locus_tag="Dmel_CG44835" /old_locus_tag="Dmel_CG15464" /old_locus_tag="Dmel_CG6775" /gene_synonym="AKAP; Akap550; CG15464; CG15466; CG44835; CG6775; DAKAP550; Dmel\CG44835; fas; Rg" /coded_by="NM_001144685.2:1089..11291" /db_xref="FLYBASE:FBpp0310997" /db_xref="GeneID:44531" /db_xref="FLYBASE:FBgn0266098" ORIGIN 1 madimrppys eikrpdeivr mttadnlkfa vliglievgq vtnrevvntv lhllvggefd 61 melnfviqda qnikhmlell dhcppnlqae iwsvfiailr ksvrnlqact dvgliehvlv 121 rlqrsetvva dlliemlgvl asysitvkel kllfgtmkat ngkwprhsak llnvlrqmph 181 rngpdvffsf pgrkgsamvl pplakwpyen gftfttwfrl dpinsvnier ekpylycfkt 241 skgvgytahf vgnclvltsm kvkgkgfqhc vkyefqprkw ymiaivyiyn rwtkseikcl 301 vngqlasste mawfvstndp fdkcyigatp eldeervfcg qmsaiylfse alttqqicam 361 hrlgpgyksq frfdnecyln lpdnhkrvsh fqllpatlga salsggsgsg tgsgtgndas 421 aaaaaavaag qqqqlqlqfq ilaaeqeara idwsdekldl naafvkirav ltarnavtla 481 gssstgttav ataaaaaaaa gagagttaaa tsaaaaaaat qnendaavgq qqhathhhat 541 aatgsaddpl ghlptgnass ssssfeqlrr mssvsslnsm vgsadteevn qlkavlydgk 601 lsnaivfmyn pvatdgqlcl qsspkgnvsy fvhtphalml qdvkavvths ihctlnsigg 661 iqvlfplfsq ldmaheglgd ikrdptlcsk llgficelve tsqtvqqhmi qnrgflvisf 721 mlqrssrehl tlevlgsfln ltkylvtcls ansdlllkql ldhvlfnpal wiytpanvqa 781 rlysylatef lsdtqiysnv rrvstvlqtv htlkyyywvv npraksgiip kgldgprpaq 841 kdilairayi llflkqlimi gngvkedelq silnylttmh edenlhdvlq mlislmsehp 901 ssmvpafdvk hgvrsifkll aaesqlirlq alkllgffls rsthkrkydv msphnlytll 961 aerlllyees lslptynvly eimtehisqq ilytrhpepe shyrlenpmi lkvvatlirq 1021 skqteslidv kklflqdmtl lcnsnrenrr tvlqmsvwqe wliamayihp ksseeqkisd 1081 mvyslfrmll hhaikheygg wrvwvdtlai vhskvsyeef klqfaqmyeh yerqrtdnit 1141 dpalrqarpi stisgweree lhqqqnggsa aavatnqtaa vkgsvsiasl edvppvveee 1201 veeleleeve iqegpiteet eqksvianis dvyneqlktd atcngnledv keeepvqqqi 1261 gdlekqpeps tplgalretl qlgddmdvee lelatakdal naeqhvsrvl qaseaalndc 1321 kmavddvlqe sssvlkdeei elavnevvqg vlnnekktqs qdnkdnkeqp geqdvnvsll 1381 nsknllnnnn nnnnnspspt pttatataet eaetevnane ivssteapka etetsvapev 1441 etpetakpsp ivpspvlatn qktedaankl nnneklaeis aspeppivve tpeadllqls 1501 dsetkpnket eaedsvalav rdiveqlidk vidateaesa setktetnnn eipkkekqts 1561 eepedvetae tlaaaakeiv qevveaalvm vqeestqekp ekganseeek neigkeeill 1621 qleekpaste vqetkiegdl kkpedpkghs svepktpnle epkpqeteqq ksqevaeelp 1681 qkpeeqvvai vnqvldtlvd dtvkavaaeq ttqtspapee qspqilames patsvrvkpt 1741 evdsttqttp kneagssllv eqvqqvlqed daqqsagmti ededysnqqa aaavenanss 1801 qldanhygpg npeskqqqqr sksgstrpmf spgptrppfr ipefkwsyih qrllsdvlfs 1861 letdiqvwrs hstksvldfv nssenaifvv ntvhlisqla dnliiacggl lpllasatsp 1921 nseldvlept qgmplevavs flqrlvnmad vlifatslnf geleaeknms sggilrqclr 1981 lvctcavrnc leckertryn vgalardvpg aahlqalirg aqaspknive sitgqlspvk 2041 dpekllqdmd vnrlraviyr dveetkqaqf lslaivyfis vlmvskyrdi leppaepqiq 2101 rqspvlqrta ggggrqiqds dyeiivvden npsvladnds hssgppsiks vdsdvgslnm 2161 nstenevpev essseilidd hkpshsndes wtdvnlneda avqaasagiv vglvdnrgnv 2221 isdkhdpshh nqqqqqqagi igqqqqhgsl ghsergdkpd seisvvrvpd gyggagsggg 2281 vnsgqgqgvp snqrprpeel pmkapalvaq lplttpsrea sltqkleial gpvcpllrei 2341 mvdfapflsk tlvgshgqel lmegkglttf knshsvvelv mllcsqewqn slqkhaglaf 2401 ielinegrll shamkdhivr vaneaefiln rmraddvlkh adfesqcaqt llerreeerm 2461 cdhlitaarr rdnviasrll ekvrnimcnr hgawgdssst ssggaivgav qkspywklda 2521 weddarrrkr mvqnprgssh pqatlkaale nggpedailq trdefhtqia vsrthpsgqh 2581 ngellddael liedreldld ltgpvnistk arliapglva pgtvsitste mffevdeehp 2641 efqkidgevl kycdhlhgkw yfsevraifs rryllqnval eiflasrtsi lfafpdqhtv 2701 kkvikalprv gvgikygipq trrasmmspr qlmrnsnmtq kwqrreisnf eylmflntia 2761 grtyndlnqy pifpwvltny eskdldlslp snyrdlskpi galnpsrray feeryeswds 2821 dtippfhygt hystaaftln wlvrvepftt mflalqggkf dypdrlfssv slswkncqrd 2881 tsdvkelipe wyflpemfyn ssgyrlghre dgalvddiel ppwakspeef vrinrmales 2941 efvscqlhqw idlifgykqr gpeairatnv fyyltyegsv dldgvldpvm reavenqirn 3001 fgqtpsqllm ephpprssam hlspmmfsam pedlcqmlkf yqnspvihis antypqlslp 3061 svvtvtaghq favnrwncny tasvqspsya espqspgsnq pltidpvlav hgtnnnsnaa 3121 srrhlgdnfs qmlkirsncf vttvdsrfli acgfwdnsfr vfatetakiv qivfghfgvv 3181 tcmarsecni tsdcyiasgs adctvllwhw nartqsivge gdvptpratl tgheqavtsv 3241 visaelglvv sgssngpvli httfgdllrs ldppaefhsp elitmsregf ivinydkgnv 3301 aaytingkkl rhethndnlq cmllsrdgey lmtagdrgiv evwrtfnlap lyafpacnag 3361 irslalthdq kyllaglstg siivfhidfn rwhheyqqry