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LOCUS NP_001096889 3205 aa linear INV 26-DEC-2023 melanogaster]. ACCESSION NP_001096889 VERSION NP_001096889.1 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 DBSOURCE REFSEQ: accession NM_001103419.2 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (residues 1 to 3205) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (residues 1 to 3205) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (residues 1 to 3205) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (residues 1 to 3205) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (residues 1 to 3205) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (residues 1 to 3205) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (residues 1 to 3205) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (residues 1 to 3205) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (residues 1 to 3205) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (residues 1 to 3205) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (residues 1 to 3205) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (residues 1 to 3205) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (residues 1 to 3205) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (residues 1 to 3205) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (residues 1 to 3205) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (residues 1 to 3205) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (residues 1 to 3205) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (residues 1 to 3205) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (residues 1 to 3205) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (residues 1 to 3205) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (residues 1 to 3205) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (residues 1 to 3205) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (residues 1 to 3205) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. The reference sequence is identical to ABW09342. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## Method: conceptual translation. FEATURES Location/Qualifiers source 1..3205 /organism="Drosophila melanogaster" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" Protein 1..3205 /product="Ca[2+]-channel protein alpha[[1]] subunit T, isoform C" /name="CG15899 gene product from transcript CG15899-RC" /note="CG15899-PC; Ca-alpha1T-PC; Ca1G" /calculated_mol_wt=354078 Region 300..623 /region_name="Ion_trans" /note="Ion transport protein; pfam00520" /db_xref="CDD:459842" Region 1230..1482 /region_name="Ion_trans" /note="Ion transport protein; pfam00520" /db_xref="CDD:459842" Region 2162..2435 /region_name="Ion_trans" /note="Ion transport protein; pfam00520" /db_xref="CDD:459842" Region 2479..2715 /region_name="Ion_trans" /note="Ion transport protein; pfam00520" /db_xref="CDD:459842" CDS 1..3205 /gene="Ca-alpha1T" /locus_tag="Dmel_CG15899" /gene_synonym="alpha1T; alphaIT; ca-alpha1T; Ca-alphaT-RC; Ca1G; Caalpha1T; cat; CG12544; CG15899; CG4222; DmalphaG; Dmca1G; Dmel\CG15899; T-type Ca[2+]" /coded_by="NM_001103419.2:401..10018" /db_xref="FLYBASE:FBpp0111866" /db_xref="GeneID:31550" /db_xref="FLYBASE:FBgn0264386" ORIGIN 1 mlpqpaaava tatttttqsa tsatstaats aaaaaarngq rrrvaaateg cnsnignsns 61 klssntttnt tkrvsqmhsn eeppmtvivd ggggsnvsvs ggsshrrgsq rlrktssssa 121 naksasanpt ertssgqrss hrqtsnasdg ggssrrryqg kehhdrrdrq drqdrqdrqe 181 rsdrherrdr rdeqqaarrr tgrrhsgass lsdaaaataa grsrsrgggr tggavssstg 241 sscngscssd dgdsshtsss ssssssgepn lpypgfpeis iraltqytrp rnwclmlitn 301 pwfervsilv illncitlgm yqpcvddacv tnrckilqif ddiifaffal emtikmvamg 361 icgkntylad swnrldffiv laglleyvmh venlnltair tirvlrplra inripsmril 421 vmllldtlpm lgnvlllcff vffifgiigv qlwegilrqr cslmrtegmv ypltlsqyye 481 fskdqdyics tpndsgmhlc gnfppyrigs lvcneeaklf dfneptntsc vnwnqyyttc 541 kqsgenpfqg tisfdnigma wvaiflvisl egwtdimyyv qdahsfwdwi yfvllivigs 601 ffminlclvv iatqfsetkk remermrqer arytststla sstnnsepat cyaeivkyia 661 hlwrrfkrrm lkkyrlykyq rqqrkegllp nadnltfsps rikchhpkcp kysnrkpssi 721 qdqmitvmvp lnsasnninn nnnnnsnssn hngsgnhtaa gggnnnnnnn nnnaascttv 781 alvngingsa asvtmssahh qqhqllqhqq qqhqnqqqqq qqqqhsssdn teqslapdgl 841 prssslkkst ahhqlkpegs aaeqktillk fpqqmidseq lilqlgnlgk shpctsgfls 901 pptsasrrps vmfneyvllh tppalnadpa tagttttvap tvatvagtaa aaaaaaatgs 961 gsgnnnhqng gasggagtgg tteksnifst ekmtqagdgs iwqvnlpqti gtianpyadc 1021 selgihdamt cqellafsva fsaalptgqs tlesfytsla rcdphtaeal rahhkprsvp 1081 tgqnqttpga egatvmvast agdtgqtlqp stvsavvggt idshaanhrr kehhqqshhh 1141 hnnnnttshs rnyrsrqgqg nsrmreprap tgnymedyac cydlyqnals plderprqrs 1201 pttrclisvy rcmsrvcswi rryirrlveh kyfqqgilla ilintlsmgi eyhnqppelt 1261 aivetsnvvf sgifavemll kvvaegpfry iangfnvfdg iivilsaiei cqtfmgngtg 1321 gggsglsvlr tfrllrilkl vrfmpnlrrq lfvmlrtmdn vavffsllvl fififsilgm 1381 ylfggkfckf ldesglerec tcpeiisrhp qcecdrkhfn nilwatvtvf qiltqedwnv 1441 vlfngmekts hwaalyfval mtfgnyvlfn llvailvegf ssernerrer eqrelvkklr 1501 eetlaenysd gmydesrsea dssttndsyy evrnrwrsae dvrklqdsve liieaksnmh 1561 rqrllqpthd yqinelpass aapsasgtsg asapgdrerd rdrdrdrerd rdrdrerdre 1621 aggggkeega qhakprgglk ktysikerrs eaprlskirl ardppiittt aatpqdspst 1681 tlepgmsfrq wgdmeppspp spsllrppni ftggqrslde gipsidlipp spvlshkpln 1741 ilnasqlgvg mgggvpstag ssssmhsvii ddisksssst aaatpiyvpt isstadaqsq 1801 shslndvsvg sspggeipat gmsrnantga stsgsssser lplapppqqg sfkqrlrrgs 1861 skkrrasala latddnparr tldnqarrtq deeeeqqqln nggdnscllr nsnavvsgss 1921 sgtketnrls pqnsirrlsn tlsigsgpvg srrasacifn sqvyqnlnqp pklrpgsgqr 1981 rmssielafs ktshlnlhnl eanrkslsyt nskmdldkwn ksygnlnepd nmlqqymear 2041 dkrknsishy nlkkrleeke lqqlqqlhqq qllqqrqdsf ssttqqqqqq lqqhrlskdq 2101 qqlamqphsm vpgggerysk lkmlieqltp khftteredy slyifpednr frqictwfvn 2161 qkwfdnvvll fialncitla merpnippss terlflatan yvftvvftve mfikvvatgm 2221 fyghdayfts gwnimdgslv tisiidllms lisessprif gilrvfrllr slrplrvinr 2281 apglklvvqt llsslrpign ivlicctffi ifgilgvqlf kgtfyycege nikgvrnade 2341 crripgnvwt nrkynfddlg kalmslfvls srdgwvnimy tgldavgvdq qpivnynewr 2401 llyfiafill vgffvlnmfv gvvvenfhrc reeqekeeki rraakralqm ekkrrrmhep 2461 pyytnysptr mfvhnvvtsk yfdlaiaavi glnvvtmame yykmpsglky alkifnyfft 2521 avfileanmk lvalgwklyl kdrwnqldvg ivllsivgiv leeletnthq iipinptiir 2581 vmrvlriarv lkllkmangi ralldtvmqa lpqvgnlgll ffllffifaa lgvelfgrle 2641 csdeipcqgl gehahfanfg mafltlfrva tgdnwngimk dtlrdncdda adcvrnccvs 2701 sviapiffvi fvlmaqfvlv nvvvavlmkh leeshkqmed eldmeveler elvreqefaq 2761 eqklcqqlae aqskaaappr plakvkslpk nfiystpsld kkfpavsgvn npsltssaat 2821 nlnqvatags ggaapgavpa gsgagprrqt vqyfqqppqs mlgglslaem ggtltpqalg 2881 arlgepfggg ggnksgprrq sywqinpirk rgvlskersl deqairrrnl eakrtscdsl 2941 pwggdaldcr rgtifesles dgggvggggs gggggglggg vsydlrsvrs advghsemdg 3001 dvslsvvsal vpsvttplpp plslpivtpt stptplqlpm pmpmpmahpp prrpfgwsqs 3061 vdqgclrsnl llsvprsmpp rsrsgstkql fkqqaldeda dmdenslllp taagggsgpg 3121 svaviasssl dlpdqsgssk qilpdialgv sksdssdilr iiserrrmdq reqrepeqdq 3181 dneaedrdsd ykelllvksp qssmd