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LOCUS NM_206692 2392 bp mRNA linear INV 26-DEC-2023 variant E (CkIIbeta), mRNA. ACCESSION NM_206692 VERSION NM_206692.3 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2392) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2392) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2392) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2392) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2392) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2392) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2392) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2392) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2392) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2392) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2392) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2392) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2392) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2392) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2392) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2392) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2392) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2392) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2392) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2392) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 2392) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 2392) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 2392) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jan 16, 2013 this sequence version replaced NM_206692.2. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2392 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2392 /gene="CkIIbeta" /locus_tag="Dmel_CG15224" /gene_synonym="And; betaCK2; Cask-II-b; CCK2; CG15224; CK II; CK-2; CK-II beta; Ck-IIbeta; CK-IIbeta; CK2; CK2-beta; ck2beta; Ck2beta; CK2beta; CkII; CKII; CKII beta; CkII-beta; CKII-beta1; CKIIb; Ckiibeta; CKIIbeta; CkIIbeta1; dCK2beta; dCKII; dCKII beta; Dm-CK2-beta; DmCK2beta; DmCkIIbeta; DmCKIIbeta; Dmel\CG15224; Ds cas kin; KC2B_DROME; mbu" /note="Casein kinase II beta subunit" /map="10E3-10E3" /db_xref="FLYBASE:FBgn0000259" /db_xref="GeneID:32132" CDS 159..866 /gene="CkIIbeta" /locus_tag="Dmel_CG15224" /gene_synonym="And; betaCK2; Cask-II-b; CCK2; CG15224; CK II; CK-2; CK-II beta; Ck-IIbeta; CK-IIbeta; CK2; CK2-beta; ck2beta; Ck2beta; CK2beta; CkII; CKII; CKII beta; CkII-beta; CKII-beta1; CKIIb; Ckiibeta; CKIIbeta; CkIIbeta1; dCK2beta; dCKII; dCKII beta; Dm-CK2-beta; DmCK2beta; DmCkIIbeta; DmCKIIbeta; Dmel\CG15224; Ds cas kin; KC2B_DROME; mbu" /note="CG15224 gene product from transcript CG15224-RE; CG15224-PE; CkIIbeta-PE; mushroom bodies undersized; CK2 (beta subunit); casein kinase II beta; casein kinase 2 regulatory subunit; andante" /codon_start=1 /product="casein kinase II beta subunit, isoform E" /protein_id="NP_996415.1" /db_xref="FLYBASE:FBpp0089135" /db_xref="GeneID:32132" /db_xref="FLYBASE:FBgn0000259" /translation="MSSSEEVSWVTWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVP NYRQALDMILDLEPEDELEDNPLQSDMTEQAAEMLYGLIHARYILTNRGIAQMIEKYQ TGDFGHCPRVYCESQPMLPLGLSDIPGEAMVKTYCPKCIDVYTPKSSRHHHTDGAYFG TGFPHMLFMVHPEYRPKRPTNQFVPRLYGFKIHSLAYQIQLQAAANFKMPLRAQRGQP PKDEEPENNADTVPKRL" misc_feature 180..731 /gene="CkIIbeta" /locus_tag="Dmel_CG15224" /gene_synonym="And; betaCK2; Cask-II-b; CCK2; CG15224; CK II; CK-2; CK-II beta; Ck-IIbeta; CK-IIbeta; CK2; CK2-beta; ck2beta; Ck2beta; CK2beta; CkII; CKII; CKII beta; CkII-beta; CKII-beta1; CKIIb; Ckiibeta; CKIIbeta; CkIIbeta1; dCK2beta; dCKII; dCKII beta; Dm-CK2-beta; DmCK2beta; DmCkIIbeta; DmCKIIbeta; Dmel\CG15224; Ds cas kin; KC2B_DROME; mbu" /note="Casein kinase II regulatory subunit; Region: CK_II_beta; smart01085" /db_xref="CDD:198153" ORIGIN 1 atcgattggc aatcgcctgc ggacagcgca ggacagcggt aatcgatagt cgagattgca 61 tacctgatat catcgtcttc gctacaatat ttgcctttac cggttcagct gcagtacaaa 121 agtcgatcaa tttgagtaat tattaacaat ttggcaaaat gagcagctcc gaggaagtct 181 cctgggtcac ctggttctgt ggacttcgtg gcaatgagtt cttctgcgag gtggatgagg 241 actacataca ggataaattc aatttaactg gtttaaatga gcaggtaccc aactatcggc 301 aagcgttgga catgatcttg gacttggaac cggaggacga gctcgaggac aatccactgc 361 agtccgacat gaccgagcag gccgccgaga tgctctacgg cctcatacac gccagatata 421 tactaacaaa tcgcggcatc gctcaaatga tcgagaaata tcaaactggc gatttcggac 481 attgtccacg tgtctactgt gaaagtcagc ccatgctgcc attgggtctg tcggacatcc 541 ccggcgaggc aatggttaag acctattgcc ccaagtgcat tgacgtgtac acaccaaaat 601 cgtcgcgtca ccaccatacc gatggcgcct atttcggcac tggatttcca cacatgctct 661 tcatggtgca tcccgaatat cgtcccaagc gtcctactaa tcagtttgtt ccaaggctat 721 atggatttaa aatacacagc ttagcttatc aaattcagct gcaggcagca gccaatttta 781 aaatgccact acgagcgcaa cgtggtcagc cgcccaagga cgaagagcct gagaataatg 841 ccgatacggt gcccaagcgc ctctaagcgc aagcagtgca gccaagcagt ccagcagccg 901 atacacccac acacacctga atacagacac agatacagat acagatacat acacacatac 961 agggcggccc acactgagga aaacaatttg gatatagaca ggaggaccaa catcaaaatc 1021 ttcaacgctg gatccaaaaa caacaacaac aagtcaccag taaaacgcat acagacatac 1081 agacacacac acacacagtc agctcctgtt cgaaaaaaga aggaaagtgg gatcaggtgc 1141 agtgtgtcca gagttttgaa cgcaaaggta aaaactaatc taataacaag tacaaaattg 1201 agtaatgcat tattattccc atgttttgta gttttcgatc ctaaaattat tgtaagattt 1261 gttattattt ccctatttaa cattcgagtg catcaaatgt gctactttaa agttgacgca 1321 cttcaaatat gaaactattt atacttgtac tttaaatatt tgatgttgtg ttagagaatt 1381 tttgaaaatt tgtttctcat ttgagagtta ttagattact ttttacgctg gtcacactga 1441 acaggtgtcg tcaactatat tctttgcatt ttatttatta agtgaaatga aaggggctaa 1501 accgatttag atatatagta tctttaaaat atttagtcaa gtggccgtat acccacccac 1561 ctttgttccc tcatttccaa tacttccctc ctgcccgcaa agagtccatt tcgatttcga 1621 atcgcccagc ctgtttgctt cctcttcaaa gcgtactact actacttcaa aaacttggat 1681 atatcgaaag ctgctgaatg cagaaaatct acaaacaaca aaaacaataa gaacagaaaa 1741 caaaaattca aaactgaacg tgacccgaat tcgaatgcga aatcgttcgg cgttcccttt 1801 cgaaatctga gagtgcatat acttatatag aaatacatat acataaacat ataaacaata 1861 taccgttagc ttatttatat atgtacacac aacacacaca cacacacaca gacatagaga 1921 acatatacac ccacacaaat ccagacctgt tcccaaattc gaatcgggtt taaattgagc 1981 gaaaccggaa attcagttgt tttcactcac cagcgaagcc aagaaattgt taagttcttc 2041 gatggggtca aaatcgccgc tattcccgag ttcgttaaat tcaagatcaa atgcgaaaac 2101 gagaacagaa ctgatattga aaacaaacaa gaacaacaac aaacaaaaca aaacggaaac 2161 caacaaaata ttttatgtat ttttttaatg tatttaagaa taattaagat taaaacaaga 2221 aaaaacaaaa atgagagaaa gcagttggcg taagatgatg ataatgcagt tatcgcagga 2281 attatatagc aaaaagcaga gataaggttg ataatgttga gcaaggaaat gaaatgataa 2341 tgaatttcga tgccagcgaa tgaggagaaa acaataaaga tgaagaaaaa cg