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LOCUS NM_206689 2160 bp mRNA linear INV 26-DEC-2023 ACCESSION NM_206689 VERSION NM_206689.2 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2160) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2160) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2160) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2160) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2160) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2160) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2160) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2160) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2160) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2160) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2160) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2160) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2160) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2160) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2160) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2160) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2160) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2160) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2160) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2160) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 2160) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 2160) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 2160) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On May 8, 2012 this sequence version replaced NM_206689.1. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2160 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2160 /gene="pkm" /locus_tag="Dmel_CG1561" /gene_synonym="CG1561; Dmel\CG1561; Dro37-0" /note="Pinkman" /map="10C7-10C7" /db_xref="FLYBASE:FBgn0030317" /db_xref="GeneID:32108" CDS 16..1923 /gene="pkm" /locus_tag="Dmel_CG1561" /gene_synonym="CG1561; Dmel\CG1561; Dro37-0" /note="CG1561 gene product from transcript CG1561-RB; CG1561-PB; pkm-PB" /codon_start=1 /product="pinkman" /protein_id="NP_996412.1" /db_xref="FLYBASE:FBpp0073384" /db_xref="GeneID:32108" /db_xref="FLYBASE:FBgn0030317" /translation="MEQPSEKTQEGEQKDRQSQEVIEVASDQGNSPDSTESYPDVDQK SPKRIDVEEPKEENSNNSEAVQDLEDNRVKKEELVAELEEPRGAEVEHIEKQLAKEID SKVIDKQELKGIEELDKKIPQLNQTFGDQLLEGDDEPEAKSKDELAENADREKLAEIS ASEIQLTGNLAAPAEQVDQKEAEPDPHEDTEDERNGEVNREHPDRMESPVEQQEDTAK PDEDLPNEQVTQFLRQLVSQLWPELGANPELRLERASAKGDNYLGVVWRLQAASDSKR SLVVKLPPQNRVRRKQFFARPCFLRETAAYEVFLPLTALIQDKWKIIGDDRFRQHALC FGTRQDEPNECIVLEDLSCAGFSLHNRFLDLSVEHVRRVMLTYAKLHAISLAGKRQLP EKMQQLQQLVDIFEQRRDDHALGVYFENLKESALSALLAPADDAYRVRLEAYFARGSY FELLLPLVSGFNCEPFAVICHGDCWNNNILYKSTERGELEDVRLIDWQLMRYASPVTD LAYFLFTCTSRRFRQRHLENMLEDYYEELGLQLIRLGERVEQLFPRPAFDEQVATKAA VGLLLAMMVLPIVTMQGQDVPDLQAISERIEAGATTDLHGAGFLGAGNEATFKQRIRE VILDCVDFNYI" misc_feature <34..681 /gene="pkm" /locus_tag="Dmel_CG1561" /gene_synonym="CG1561; Dmel\CG1561; Dro37-0" /note="MAEBL; Provisional; Region: PTZ00121" /db_xref="CDD:173412" misc_feature 784..1653 /gene="pkm" /locus_tag="Dmel_CG1561" /gene_synonym="CG1561; Dmel\CG1561; Dro37-0" /note="Ecdysteroid kinase-like family; Region: EcKL; pfam02958" /db_xref="CDD:397213" ORIGIN 1 gtggcgtagt gtgccatgga acagcccagt gagaagacgc aggaggggga gcagaaagat 61 cgccaaagtc aggaagtgat agaagtggca tccgatcaag gaaattcacc agactcaaca 121 gaaagttatc cagatgtcga tcagaagtca cctaaacgaa ttgatgttga ggaaccaaag 181 gaggagaact caaataacag cgaagcagtg caggatttag aagataatcg tgtgaaaaag 241 gaggaattgg tggcagagtt ggaggaaccg agaggtgctg aggtggagca cattgaaaaa 301 caactagcca aagagattga ttcgaaagtg atcgacaaac aagagctcaa aggcatagag 361 gagcttgata aaaaaattcc ccagttgaat caaacatttg gagatcagtt gttggaagga 421 gatgatgagc ctgaggcgaa atcaaaggat gagctggcag agaatgcgga cagggaaaaa 481 ctagcagaaa tctctgcgag tgagattcag ctcactggca acctagcagc tccagcagag 541 caagttgatc agaaggaagc cgaaccagat ccacatgaag acaccgaaga tgaacgaaat 601 ggggaggtga atagagagca cccagacagg atggagagtc ctgtagagca acaagaggac 661 acagccaagc cagacgaaga tctgcccaac gagcaggtta cacagttcct tcgccaactg 721 gtcagccagc tgtggccaga gctgggcgcc aatccggaac tgcgtctgga aagggcgagt 781 gccaagggcg acaactattt gggcgtggtg tggcgcctac aggcggcatc cgattcgaaa 841 cgcagcctgg tggttaaact gccgccacag aatcgcgtgc gccgcaagca attctttgca 901 cgaccatgtt tcctgcgcga gacggcagca tatgaggtct ttctgccgct gactgcgtta 961 attcaggata agtggaagat aatcggagat gatcgtttcc ggcagcacgc gctctgtttc 1021 ggaactcgcc aggatgagcc caacgagtgc atcgtgctgg aggatctgtc ttgtgccggc 1081 ttctcactgc acaatcgctt tctcgaccta tccgtcgagc atgtgcgtcg cgtaatgctc 1141 acctatgcca aattacatgc tatatcattg gccgggaaac ggcagttgcc cgagaaaatg 1201 caacaactgc agcagctggt ggatatcttt gagcagcgac gcgatgatca tgccttgggg 1261 gtctacttcg agaatctgaa ggaaagcgcc ctatccgcac tgctcgcacc ggcggatgat 1321 gcatacagag ttcgtctgga ggcgtacttc gccagaggat cgtactttga gctgctgctg 1381 cctttggtca gcggattcaa ttgcgaaccc ttcgctgtta tttgccacgg cgattgctgg 1441 aataacaaca ttctctacaa gagtacagag cggggcgagc tcgaggacgt gcgcctgatc 1501 gactggcaac tgatgcgata tgcctcgccg gtcaccgatc tagcttactt cctcttcact 1561 tgcacttcgc ggcgattccg gcagcgacac ctcgaaaata tgctcgagga ttactatgaa 1621 gagttgggcc tgcagctgat tagactaggc gagcgggtgg agcaactttt tccccgtcct 1681 gcattcgatg aacaggtggc taccaaagcg gctgtgggcc tgcttctcgc catgatggtt 1741 ctacccattg taacgatgca gggtcaggat gtgcccgacc ttcaggcaat tagcgagcgc 1801 atcgaggcgg gggccactac ggatctccat ggagctggtt tcctgggcgc gggcaacgag 1861 gctacattta aacagcgtat acgcgaggtg atcctcgact gtgtggactt taattacata 1921 tagatggctc accttctggc gcgccacttg catcggattc agccgaagct tcttggcact 1981 ggtgccaaaa cgcagggtgg acaacgtctc gctgagatcg cattgatgcg gactgatgca 2041 ggccagaaag gtcagatacg actgcgcggt tagcgaggct gcaaagaatg aaaacggcaa 2101 gaagttgcag tcaatattta tagtagtcac taagtcgcta atcaataaag gcttgaaccc