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LOCUS NM_206677 2409 bp mRNA linear INV 26-DEC-2023 2-related protein, transcript variant C (PPP4R2r), mRNA. ACCESSION NM_206677 VERSION NM_206677.2 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2409) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2409) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2409) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2409) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2409) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2409) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2409) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2409) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2409) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2409) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2409) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2409) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2409) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2409) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2409) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2409) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2409) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2409) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2409) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2409) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 2409) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 2409) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 2409) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jan 16, 2013 this sequence version replaced NM_206677.1. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2409 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2409 /gene="PPP4R2r" /locus_tag="Dmel_CG2890" /gene_synonym="BcDNA:LD29930; CG2890; Dmel\CG2890; PP4R; PP4r2; PP4R2; PP4R2r; Ppp4R2; PPP4R2; R2" /note="Protein phosphatase 4 regulatory subunit 2-related protein" /map="9D1-9D2" /db_xref="FLYBASE:FBgn0030208" /db_xref="GeneID:31979" CDS 144..1973 /gene="PPP4R2r" /locus_tag="Dmel_CG2890" /gene_synonym="BcDNA:LD29930; CG2890; Dmel\CG2890; PP4R; PP4r2; PP4R2; PP4R2r; Ppp4R2; PPP4R2; R2" /note="CG2890 gene product from transcript CG2890-RC; CG2890-PC; PPP4R2r-PC; PP4 regulatory subunit; protein phosphatase 4 regulatory subunit 2-related protein" /codon_start=1 /product="protein phosphatase 4 regulatory subunit 2-related protein, isoform C" /protein_id="NP_996400.1" /db_xref="FLYBASE:FBpp0089154" /db_xref="GeneID:31979" /db_xref="FLYBASE:FBgn0030208" /translation="MVTMENSDEIMQILERFTDLKQKEIPKELEEYLQYVAKTGDTIF KWSSLKYLFREKLLSVIKHFNEDSPRLEEIPNYPNVDPFNYETMKSSLLERLDLFNAA PFTVQRLCELLIDPRKQYSRIDKFMRALEKNILVVSTIDPGRKRTESENGDSLDSVVN GDLSMEVNIDIEMENNNGNADEGSSPGAGSAGCAQKASCPRSDDNDQPKAKKAKLEID GEERSEASDETDTEVATRVKNEKDEKNDNDETDSPHEAAEIEEPDEEVDEADQETKTT KQPAYGSQKEGEQEESFPSSADDEAEDPMVSKSIEAEKELVAQEKKREEDKKVAIEPK EEIVKKEEVVESDKPDGKVAQLGDKAVVKKSTPPADGENQEPVKVKAENEKEEKKHAP IKTEKQDDIDSTETDDAPSAEKPAEEKIASSESKPKTKSEDDPEAETKKSQPEKTETE AAEKSVSDEKQAAEPNAESENRNDLTTSKATEAAQESVEKSPVEDASSPAVEDLAAAT TPQSPLGAADSAAETPPAETGDDSQASPLVAAVTPPVLALNDQPMEDTPAEEEARVSP SATVEEVVMAESANAGAMATEEAAKDDPAAMEIDDTSQEVMMQ" misc_feature 180..1049 /gene="PPP4R2r" /locus_tag="Dmel_CG2890" /gene_synonym="BcDNA:LD29930; CG2890; Dmel\CG2890; PP4R; PP4r2; PP4R2; PP4R2r; Ppp4R2; PPP4R2; R2" /note="Region: PPP4R2; pfam09184" /db_xref="CDD:462710" misc_feature <771..>1649 /gene="PPP4R2r" /locus_tag="Dmel_CG2890" /gene_synonym="BcDNA:LD29930; CG2890; Dmel\CG2890; PP4R; PP4r2; PP4R2; PP4R2r; Ppp4R2; PPP4R2; R2" /note="MAEBL; Provisional; Region: PTZ00121" /db_xref="CDD:173412" misc_feature <1464..1886 /gene="PPP4R2r" /locus_tag="Dmel_CG2890" /gene_synonym="BcDNA:LD29930; CG2890; Dmel\CG2890; PP4R; PP4r2; PP4R2; PP4R2r; Ppp4R2; PPP4R2; R2" /note="DNA polymerase III subunit gamma/tau; Region: PRK12323; cl46901" /db_xref="CDD:481241" ORIGIN 1 cacatcactc tcaatattaa ttgataagca aaaaattgag caagttctcg cataaacttt 61 gcaatcggaa aagcgtagtt gtgataaaaa caagtagaat aacaaaaaca aaaaaacaac 121 aaacaaaaaa aacgatcgcc taaatggtca ccatggaaaa cagcgacgag ataatgcaga 181 tcctagagcg ctttacggat cttaaacaaa aggagatccc aaaggagctg gaggagtacc 241 tacagtatgt ggccaagacc ggcgacacca tcttcaagtg gtccagcctg aagtacttgt 301 tccgcgagaa gctgctcagc gtgatcaagc actttaatga ggattcgccg cgtttggagg 361 agattcccaa ctatccgaat gtggaccctt tcaactacga gaccatgaag tcctcgttgc 421 tggagcgctt ggaccttttc aatgcagctc cttttaccgt gcagcggttg tgcgagctac 481 taatcgatcc tcggaagcag tactcgcgca tcgataagtt tatgcgtgct ttggaaaaga 541 atattttagt ggttagcaca atcgatcctg gacgcaagcg taccgaaagt gagaatggcg 601 actcgctgga ctcagtggtc aacggggacc tctccatgga ggtgaacatt gacattgaaa 661 tggagaataa taacggtaac gccgatgagg gctcatctcc cggcgccggt tcggcaggtt 721 gtgcccagaa ggcaagctgc ccgcgttcgg acgacaatga tcagcccaag gccaagaagg 781 caaaactgga gatcgatggt gaagagcgtt cggaagcgag cgatgaaacg gacacagaag 841 tggcaaccag ggtcaaaaat gaaaaggatg agaagaatga caacgatgag actgattcgc 901 cgcatgaggc tgccgagatc gaggagcccg atgaagaggt ggatgaggct gatcaggaga 961 ccaagaccac caagcagcct gcttacggca gtcagaagga gggcgagcag gaggaaagtt 1021 tcccatcatc tgccgatgac gaggcggagg acccaatggt gagcaaatcc atagaagctg 1081 agaaagaact tgttgctcag gaaaagaaga gggaggagga caaaaaggtg gcaatcgagc 1141 caaaagaaga gattgtaaag aaggaagagg tcgtcgagtc tgataaaccg gacggaaagg 1201 tggcacagtt aggcgacaag gcagttgtca agaaatctac accgcctgcc gatggggaaa 1261 accaggagcc tgtcaaagtc aaggcagaaa acgaaaagga ggagaaaaaa catgcaccaa 1321 ttaaaactga aaagcaggac gatatcgact ctactgagac tgacgatgcc ccatcagcag 1381 aaaaacccgc tgaagaaaag atagcttcct ccgaatcgaa accgaagacc aaatctgagg 1441 acgatccaga ggccgagacc aagaagagcc aaccggaaaa gactgaaact gaggcggccg 1501 agaagtcggt ttcggatgaa aagcaggctg ccgagccgaa tgcagaaagc gagaatagga 1561 acgacttgac cacttccaaa gcgaccgagg cagcccagga gtcagtcgag aagtcgccgg 1621 ttgaggatgc ttctagtcct gctgtggaag atctggcagc tgcaaccaca ccgcaatctc 1681 ctttgggcgc tgccgattcc gctgctgaga cgccgcctgc tgagacaggc gatgactcgc 1741 aggcttcgcc cttggtcgcc gctgtaactc cgcctgtctt ggccctcaac gaccagccca 1801 tggaggatac tccagccgag gaggaggcac gcgtctcgcc gtcggccacc gtcgaggagg 1861 tggtaatggc cgaaagcgcc aatgccggcg caatggccac cgaagaggcc gccaaggacg 1921 atccggccgc catggagatc gatgacacca gccaggaggt gatgatgcag tagattgggc 1981 ccattcagga gccgtaaaca cctttattta actactactc catataacta gtattttaag 2041 acaaaagccg caaataatgt agatgtaatc ctgccctgct ttccctttta tatcccaaca 2101 gatcccaata ctttccaata aggcaagcag tggtagctcc cccttcgtag ccgtaagtcg 2161 cagcccggac acgatccaac actagactct gttggcggtt cggtgtttca tgctctgtgg 2221 cctccccttt tgttttgtat ttatgttgtg ctgtccaccc ccttgcgaat gacaattttg 2281 agtatctcaa ccccctcgcc actgttccca aattttttta aataatctag ttttagacgc 2341 tgtccgtggc acgaacttcg gcaagctgtg agcgcgatta aacacagaat aaacactact 2401 cgtaataac