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LOCUS NM_206661 2515 bp mRNA linear INV 26-DEC-2023 D (CG12065), mRNA. ACCESSION NM_206661 VERSION NM_206661.3 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2515) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2515) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2515) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2515) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2515) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2515) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2515) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2515) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2515) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2515) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2515) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2515) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2515) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2515) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2515) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2515) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2515) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2515) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2515) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2515) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 2515) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 2515) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 2515) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jul 15, 2014 this sequence version replaced NM_206661.2. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2515 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2515 /gene="CG12065" /locus_tag="Dmel_CG12065" /gene_synonym="Dmel\CG12065" /map="7F5-7F7" /db_xref="FLYBASE:FBgn0030052" /db_xref="GeneID:31798" CDS 229..2154 /gene="CG12065" /locus_tag="Dmel_CG12065" /gene_synonym="Dmel\CG12065" /note="CG12065 gene product from transcript CG12065-RD; CG12065-PD" /codon_start=1 /product="uncharacterized protein, isoform D" /protein_id="NP_996384.1" /db_xref="FLYBASE:FBpp0071163" /db_xref="GeneID:31798" /db_xref="FLYBASE:FBgn0030052" /translation="MSERRSHIQMAPPPPPPKPNKSQTANGNGIGNGTGIGTGTGNGT LPNGNKNYNKIVAVQDQEPLAQNSSGVQRSQSPPRTEQVVMTPRGKTANSTVILIERK LVDEINDRVHVAGGDHTGIIINKDTVAGQKSASKAAALSLEFRVFLVSANTGKHSQES RTLRFWFRDWLTNEEKQAHIAQDFFKELVSPQDFPRDYVGFIKKIMKLLQHGYSEIQS IEIELRILEETSAPPSRPLSLEESQFESPPLTQEKVLELIEQAYPNPVSPEDLAKDYG WSEQDVLLVIKSLQERGLIKSMEYNAYTRIHHEDKEIKVVKQMPTIASNKQPTIAIIT AQYCEKLAVDAMLENKETFVRYTTVGESNVYTLGNIGAHRIVSTKLPSVGSNREAMTA TGNTTTRLLGTFQKVDYVFIVGVAGGVPHYTDYKKHVRLGDVVISYVDKQRALISNSK EKPYVYLYKSGEDVKTYFPVNDSLQQIAESLQANMQVKRPWEDYLNQAQQALAQKTDA DFNRPDARTDKLFMNIGNNEVIEVAHPIAADEVDGVNRLRLHLGPIGSGRDLVRSDEL RTQFARKYGLLATDVEMSSVLDSIIGNCRESFILVKGIADYKDGTSTRKWQNFAAISA ASVVKSVICGMDAPTNV" misc_feature 958..>1116 /gene="CG12065" /locus_tag="Dmel_CG12065" /gene_synonym="Dmel\CG12065" /note="Predicted transcriptional regulator, contains CW (cell wall-binding) repeats and an HTH domain [General function prediction only]; Region: COG2512" /db_xref="CDD:442002" misc_feature 1213..2124 /gene="CG12065" /locus_tag="Dmel_CG12065" /gene_synonym="Dmel\CG12065" /note="Nucleoside phosphorylase/nucleosidase, includes 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase MtnN and futalosine hydrolase MqnB [Nucleotide transport and metabolism, Coenzyme transport and metabolism]; Region: MtnN; COG0775" /db_xref="CDD:440538" ORIGIN 1 tcagttgaaa agcgaacttt gaacaaaacg gactttgaaa agggtttcca tccatcaaca 61 tctatccccg tgttttcatt ttgtttttgc cggcattttg gccaccagca gcagcaagtt 121 tgggctcaag gacgtcgccg gagcagcggt atcgtatcgg atcgaaggag cagcagttcc 181 agcaccaagg aacaggagga gcaaggcgga gcaactagca ccagcaccat gtcggagcgc 241 aggagtcaca tacagatggc gccgccaccg ccgcccccca agccaaacaa atcgcagaca 301 gccaatggaa atggtattgg gaacggcaca ggcataggaa cgggcactgg caacggaacc 361 ctgccgaatg gcaataaaaa ctataacaaa attgtcgcag tccaagacca ggagccgctg 421 gctcagaact cgagcggcgt tcaaaggagc cagtcgccac cacgcacaga acaggttgtg 481 atgacgccac gcggtaaaac ggccaacagt acggtgatcc tcatcgaacg caaactggtc 541 gatgagatca atgatcgcgt tcatgtcgcc ggcggtgatc atacgggcat catcattaac 601 aaggacacgg tcgccggaca gaagagcgcc agcaaggcgg cagcgctatc gctggaattc 661 cgcgtctttc tggtcagcgc caatacgggc aagcattcgc aggagtcgcg caccctgcgc 721 ttctggttcc gcgactggct gaccaacgag gagaagcagg cgcacatagc ccaggacttc 781 ttcaaggagc tggtcagtcc gcaggacttt cccagagact acgtgggctt catcaagaag 841 ataatgaagc tcctgcagca cggatactcg gagatccagt cgatcgagat tgagctgcgc 901 atcctggagg agacatccgc accaccctcg cgaccacttt cgctcgagga atcgcagttc 961 gaatcaccgc cgttgactca ggagaaggtg ctggagctca tcgagcaggc atatcccaat 1021 cccgtgtccc ccgaggatct ggccaaggat tacggctgga gcgagcagga tgtgctgctg 1081 gtgatcaagt cactgcagga gcgcggtctg atcaagtcga tggagtacaa tgcgtacact 1141 cgcatccatc acgaggacaa ggagattaag gtggtcaagc agatgcccac gatcgcctcc 1201 aacaagcagc ccaccattgc catcatcacg gcgcaatatt gcgagaagct cgccgtggac 1261 gcaatgctcg agaacaagga gacattcgtc cgatacacca cagtcggcga atcgaatgtg 1321 tatactctgg gcaatatcgg ggcgcacagg atcgtgagca ccaagctccc gtcggtgggc 1381 agcaatcggg aggcgatgac ggcgacgggc aataccacaa cccgtctgtt gggcacattc 1441 caaaaggtcg actatgtttt catcgtgggc gtagccggtg gcgttcccca ctacacggac 1501 tataagaagc acgtgcgact gggcgatgtg gtcatctcgt atgtggacaa acagcgggca 1561 ctgatcagca atagcaagga gaaaccgtac gtgtacttgt acaagagcgg cgaggacgtg 1621 aagacctact tcccggtgaa cgattcgctg cagcagatcg ccgagagcct gcaggccaac 1681 atgcaggtga agcggccgtg ggaggactac ctgaaccagg cccaacaggc gttggcccag 1741 aagacggatg ccgacttcaa ccggccggac gcgcggacgg acaaactgtt tatgaacatt 1801 ggaaataacg aggtgatcga ggtggcccat cccattgccg ccgacgaggt ggacggtgtc 1861 aatcggttgc gactccatct gggtcccatt ggatccggaa gggatctggt gaggagcgac 1921 gagctgcgca cccagttcgc caggaagtac ggcctactgg ccaccgatgt ggagatgagc 1981 agcgtgctgg acagcatcat tggcaattgc agagagagct ttatactggt gaagggcatc 2041 gctgactaca aggacggcac gtccaccagg aagtggcaaa acttcgctgc catttcggcg 2101 gcgtcggtgg ttaagtcggt tatctgcggc atggacgcgc ccacgaatgt ataggaggcg 2161 gggcttcgaa taccccattt cctccattac accccaaccc ccccgcccac cccttccctg 2221 caatcgtagc atttgatttg cctccaattt tcgtaccaat cccgctgcgg cgtcccttta 2281 tttttttgtg gccagacaca tggggaccac tattcgtaaa ccaaaatgtg catagattgc 2341 atcatatata atgtatgttc gcgtaatatt gtattaaatg atttcttgtt atttattttg 2401 ttataacttt tgtactacaa tcaatctaat ttacacacaa acacttgacg tatataaaaa 2461 cacatatata caacagtaaa taaatatcgc aactaagctt gcaaaaacta agaat