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LOCUS NM_206643 2559 bp mRNA linear INV 26-DEC-2023 ACCESSION NM_206643 VERSION NM_206643.2 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2559) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2559) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2559) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2559) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2559) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2559) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2559) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2559) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2559) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2559) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2559) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2559) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2559) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2559) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2559) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2559) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2559) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2559) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2559) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2559) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 2559) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 2559) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 2559) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jan 16, 2013 this sequence version replaced NM_206643.1. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2559 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2559 /gene="orion" /locus_tag="Dmel_CG2206" /gene_synonym="CG2206; Dmel\CG2206; l(1)G0193; l(1)G0327; Orion" /map="7C9-7C9" /db_xref="FLYBASE:FBgn0027280" /db_xref="GeneID:31712" CDS 393..2333 /gene="orion" /locus_tag="Dmel_CG2206" /gene_synonym="CG2206; Dmel\CG2206; l(1)G0193; l(1)G0327; Orion" /note="CG2206 gene product from transcript CG2206-RB; CG2206-PB; orion-PB; lethal (1) G0193" /codon_start=1 /product="orion, isoform B" /protein_id="NP_996366.1" /db_xref="FLYBASE:FBpp0071082" /db_xref="GeneID:31712" /db_xref="FLYBASE:FBgn0027280" /translation="MAPPFGLLAAVVAVLVTLVICGNTKSASSEGWMHPSTPQMEVDA LRTEYIALERALWNYLAKTANSQNNKETQIRKVYDSHRDFDAKPQMRRTFEEHRYKIL NHYEWSLLERDLIYISKLYDAYKDTFVKQSNSVELDELAVLNLAGAILRNDNTASMPR ILQEIERVMVSQTLYYRAMIVSTDQICNTMQSAQQFIYSLYADIALTELKAYTMMEFS WMMLRVYGKGNYTQEAEIMRSEYEKRTERTLKILKDVMLRADRIVYRCDPTKHVRGVT YDEVTRLLQGYIENEVDLNKEETCRETCDFYQSTRSEGCFKDLYCSRQPKCSGRLYNC RFVDSDMWVCPSPQNSTRRYEFIEYENGRVLGQRGKCTRGTTKVDSWWRYLLWHCSYC FCLCDEEGLKSDRFFNLRDTIADVKRNRVVTGLRFVKQNRIFHLQIQEGELLPRGIVN QSTLEWKPVEKYNVFDRHVKNGVDYHKLSYEKRTIDLDDVDTDDNSFVVTGVRFRVVG THLNLEAYYSEFDFRTGQLIRPEYNSYWKSNDNTDVSGARREKLRLSNADVSTRTIAH SIPLSRHNQYIDFTNTGLDKDAAQSTVPFMDIQDVVSNPPVPLAGIGIYYKGRNGYGG FLGPKIITYDFMPHVQVPKNRF" misc_feature 942..1706 /gene="orion" /locus_tag="Dmel_CG2206" /gene_synonym="CG2206; Dmel\CG2206; l(1)G0193; l(1)G0327; Orion" /note="Domain of unknown function (DUF4803); Region: DUF4803; pfam16061" /db_xref="CDD:465000" ORIGIN 1 aaattacagt agctgaacag cactcagaac cacaacaccc agcagaggcg agcgggaatt 61 aaagtaaatc gcaaatcata aaaaatcgtg aaatctcagc tgtatcgagg acgagcattc 121 taaaacgagg ctcggattct ttgtttccaa ttgaaggaag ttgaagttga agttgcggaa 181 agcaagcagt gcaccctgct gttgctcttc ttcttgcctt gccctttcat tagcagcaaa 241 gaagtaaaac ctcaaatacg aagtataaat agaagaagca gaaaacccaa ggctagacaa 301 attggaaaca tacagggata caatacaggg acagggaaat ccccgtattt tatattcgct 361 agctggatac atatcttatc gggcgagtaa atatggcgcc gcctttcgga ttattagctg 421 ctgttgttgc tgttcttgtc acgcttgtga tttgtggaaa tacaaaatcg gcgtcgtccg 481 agggatggat gcacccaagc accccacaaa tggaagtgga cgctctgcgc accgaataca 541 tcgccctgga acgcgccctg tggaattatc tggccaaaac ggccaatagt caaaacaata 601 aggaaacaca gataaggaaa gtatacgatt cgcatcgcga tttcgatgcg aaaccccaaa 661 tgagacgcac cttcgaggag catcgctaca agatcctcaa tcactacgaa tggtcgctat 721 tggaaaggga tctcatttat atcagcaagc tttacgatgc ctacaaggac acctttgtca 781 agcagagcaa cagcgtcgaa ctggatgaac ttgccgtttt aaatctagcc ggagcaatcc 841 tgcgcaacga taacaccgcc tcaatgccac gaatcctgca ggaaatcgag cgagtgatgg 901 tttctcagac cctctactac cgagccatga tagtgtctac cgatcaaatt tgcaatacca 961 tgcaatcggc ccagcagttt atatactcac tatatgcgga tatagccctg accgaactga 1021 aagcctacac catgatggaa ttctcgtgga tgatgttgcg ggtctacggg aagggcaact 1081 acacccagga ggcggaaatc atgcgttccg aatatgagaa gaggacggaa cgcacactaa 1141 aaatactcaa ggatgtgatg ctacgagctg atcgtatcgt ttaccgctgt gatccgacga 1201 aacatgtacg gggagtcacc tatgacgagg tcacgcgcct ccttcaaggc tacattgaaa 1261 acgaggtgga tttgaataaa gaggaaactt gccgagagac gtgtgacttt tatcagtcca 1321 cccgcagtga aggctgcttt aaggatctct actgttcccg tcagccgaaa tgtagtggtc 1381 gtctgtacaa ctgcaggttc gtagactccg acatgtgggt gtgcccgtcg ccacagaata 1441 gcacgcggcg ctatgagttc atcgagtacg aaaacggacg cgtccttggc cagcggggta 1501 agtgcaccag gggcaccacc aaggtggaca gctggtggcg ttaccttctc tggcactgca 1561 gctactgctt ctgcctgtgc gacgaggagg gtctgaagtc tgatcgtttc ttcaatctgc 1621 gggacacgat cgccgatgtc aagcgcaacc gagtcgtgac tggtttgcgt tttgtaaagc 1681 aaaatcgcat tttccatctg caaatccagg agggcgaact cctgcctcgt ggtattgtca 1741 atcaaagcac tctggaatgg aaacccgtgg aaaagtacaa cgtctttgat cgtcatgtga 1801 agaatggcgt tgattatcat aagttgagct acgagaaacg caccatcgat ctggacgatg 1861 tggatacgga tgacaattcc tttgtcgtta ccggcgtgcg attccgtgtg gtgggcacac 1921 atctgaattt ggaggcctac tacagtgagt ttgatttccg gacgggtcag ctcatccggc 1981 cggagtacaa tagctattgg aagtccaacg acaataccga tgtcagcggc gcacgcaggg 2041 agaaactgcg tctgagcaac gccgacgtgt ctacgcggac aatagcacac tcgatacctc 2101 tgtcgcgcca caatcagtac atcgacttca ctaacactgg actggacaag gatgccgccc 2161 agagcacagt gccgtttatg gacatccagg acgtggtctc gaatccacca gtaccactag 2221 ccggcattgg catttactac aagggccgca acggctacgg cggcttcctg ggccccaaga 2281 tcatcaccta cgacttcatg ccccacgttc aggtgccaaa gaatagattc taaagcggag 2341 agaagcggtg ctgtttccat cccgcacata tgtcatagct tttttttagt tgtacactac 2401 ctatcaatac acacttgcgt ttaactgtcg catagtctaa gtgagatcag aggagaacga 2461 accgcaggag atgcagaatc cggcaagaca agaatataaa aacaaattat attgaaaata 2521 acaaaagaaa taaaaacgaa tgtgaatctg agaaaccag