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LOCUS NM_206625 2439 bp mRNA linear INV 26-DEC-2023 transcript variant A, mRNA. ACCESSION NM_206625 VERSION NM_206625.2 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2439) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2439) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2439) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2439) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2439) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2439) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2439) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2439) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2439) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2439) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2439) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2439) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2439) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2439) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2439) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2439) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2439) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2439) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2439) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2439) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 2439) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 2439) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 2439) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jul 15, 2014 this sequence version replaced NM_206625.1. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2439 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2439 /gene="Vap33" /locus_tag="Dmel_CG5014" /gene_synonym="anon-EST:Liang-2.42; anon-WO03040301.124; BcDNA:GM03307; CG5014; clone 2.42; Dmel\CG5014; dvap; dVAP; DVAP; dVAP-33; DVAP-33A; dVAP-A; dvap33a; dVAP33A; DVAP33A; l(1)G0231; VAP; VAP-33; Vap-33-1; VAP-33-1; vap-33A; Vap-33A; vap33; VAP33; vap33-1; Vap33-1; VAP33-A; VAP33A; vapb; VAPB" /note="VAMP-associated protein 33kDa" /map="3F9-3F9" /db_xref="FLYBASE:FBgn0029687" /db_xref="GeneID:31349" CDS 568..1275 /gene="Vap33" /locus_tag="Dmel_CG5014" /gene_synonym="anon-EST:Liang-2.42; anon-WO03040301.124; BcDNA:GM03307; CG5014; clone 2.42; Dmel\CG5014; dvap; dVAP; DVAP; dVAP-33; DVAP-33A; dVAP-A; dvap33a; dVAP33A; DVAP33A; l(1)G0231; VAP; VAP-33; Vap-33-1; VAP-33-1; vap-33A; Vap-33A; vap33; VAP33; vap33-1; Vap33-1; VAP33-A; VAP33A; vapb; VAPB" /note="CG5014 gene product from transcript CG5014-RA; CG5014-PA; Vap33-PA; Vap-33-1; Vap33-1; VAMP-associated protein of 33kDa A; VAMP-associated protein of 33kDa ortholog A" /codon_start=1 /product="VAMP-associated protein 33kDa, isoform A" /protein_id="NP_996348.1" /db_xref="FLYBASE:FBpp0089169" /db_xref="GeneID:31349" /db_xref="FLYBASE:FBgn0029687" /translation="MSKSLFDLPLTIEPEHELRFVGPFTRPVVTIMTLRNNSALPLVF KIKTTAPKRYCVRPNIGKIIPFRSTQVEICLQPFVYDQQEKNKHKFMVQSVLAPMDAD LSDLNKLWKDLEPEQLMDAKLKCVFEMPTAEALESKPKLSSEDKFKPSNLLETSESLD LLSGEIKALRECNIELRRENLHLKDQITRFRSSPAVKQVNEPYAPVLAEKQIPVFYIA VAIAAAIVSLLLGKFFL" misc_feature 592..912 /gene="Vap33" /locus_tag="Dmel_CG5014" /gene_synonym="anon-EST:Liang-2.42; anon-WO03040301.124; BcDNA:GM03307; CG5014; clone 2.42; Dmel\CG5014; dvap; dVAP; DVAP; dVAP-33; DVAP-33A; dVAP-A; dvap33a; dVAP33A; DVAP33A; l(1)G0231; VAP; VAP-33; Vap-33-1; VAP-33-1; vap-33A; Vap-33A; vap33; VAP33; vap33-1; Vap33-1; VAP33-A; VAP33A; vapb; VAPB" /note="MSP (Major sperm protein) domain; Region: Motile_Sperm; pfam00635" /db_xref="CDD:459882" ORIGIN 1 cgatattttt ttcacatcac tagctgacag aatatatggc ttttttacat tttgcgtttt 61 caactgaagt ttgcgaagaa accgaagcgt ggtaaaccac tgaaatcgaa aatatcgaca 121 gaaaagcgac ctaaagtcgg tgaagaagtc gcacgttgat cgttgtgttt ttttcccgaa 181 attttctgca aaaagcccgt gcgtgcgtga gtttctctgg ctcttgcttt ttttttgtcc 241 atgcgtgtgt gtgtggtcgc ataaatttac cgatatttcg cctgtgagag cgaaacgaac 301 gaaaaacgaa agaaaaaaag agagacgagt aaagtaaaac gaaacaggca taaaaacagc 361 agcagttttc ttgatatatt tggctaaaaa acgcaaacca aacagccagc aagaacaaca 421 aatagctggg caaaaacagg acgcacaaaa aataaaatta aaacgataag aggcgaaaag 481 cggagagagt gaaattctcg gcagcaacaa cgacaagaac aacaccagga gcagcagcaa 541 caacaacaac aaaagccagc cgccacaatg agcaaatcac tctttgatct tccgttgacc 601 attgaaccag aacatgagtt gcgttttgtg ggtcccttca cccgacccgt tgtcacaatc 661 atgactctgc gcaacaactc ggctctgcct ctggtcttca agatcaagac aaccgccccg 721 aaacgctact gcgtacgtcc aaacatcggc aagataattc cctttcgatc aacccaggtg 781 gagatctgcc ttcagccatt cgtctacgat cagcaggaga agaacaagca caagttcatg 841 gtgcagagcg tcctggcacc catggatgct gatctaagcg atttaaataa attgtggaag 901 gatctggagc ccgagcagct gatggacgcc aaactgaagt gcgttttcga gatgcccacc 961 gctgaggcgc tcgagagcaa gccgaagctc tccagcgagg ataagtttaa gccatccaat 1021 ttgctcgaaa cgtctgagag tctggacttg ctgtccggag agatcaaagc gctgcgtgaa 1081 tgcaacattg aattgcgaag agagaatctt cacttgaagg atcaaatcac acgtttccgg 1141 agctcgccgg ccgtcaaaca ggtgaatgag ccctatgccc cagtcctggc tgagaagcag 1201 attccggtct tttacattgc agttgccatt gctgcggcca tcgttagcct cctgctgggc 1261 aaattctttc tctgaatgcc ataaacgaac gccagcaaca tgctacatgc aacgtgcagc 1321 aacagtaaca gcaagaacag cggcaacacc atcatacagc aacagcaaca acaaaagcaa 1381 aagcagcagc agcagcagca actaacaata gcaacaacaa cgaaagaaga acagcagcag 1441 caggagcatt aaaataaatt taattggcag aagaaacaaa ccacagagac gaatgtaaag 1501 ctgactaaac cggggaccgt atacatttaa acggttgtat tgaaaatcaa aaataatcat 1561 tgtttgttag cgaaacaagt atcgctcaga atagtatgga ttatgatgtg agaaatattg 1621 tttggttcca acatattgct caaagacaga ttggcagttc ttgtttttaa tacgaatctt 1681 aacgagactt aagtgtaaag cattcgaaac aattttaagc tgtattgacg cttcgtgtat 1741 ttcaaccaaa aatatttaag tttttgcaag atctcgcttg aattagtcgc aaccggactt 1801 tgagtaataa gaacatttgg gccctatgaa atccctcaca tcataatcaa tacttaaaaa 1861 aaagaaaaca taacgaatga ttacttttgg tacctgggct aaacaaaaca aaaaaaaaaa 1921 aaaaaaacaa aaaaaaaacc gcagagaaag ggaaaaatag aagagacgta aaatcgtatt 1981 ttcgcaaggg ggaacatctc tcaagaactc tttaaaatcc gctaagatcc atacgtatat 2041 ttgctcagat tttcgattgc attttttcgc tattattaat ttgtaagaac ttaagtttaa 2101 aatgcctcac aattcgtttt aataattttt cgatgcattt gcaaacggga aaagtcaagt 2161 atttcaaaga ataacaaaaa ttatcattaa tcataccttc tcgacgaaac taaaagaaaa 2221 accaatttgt tacttgagtg cgagaataaa cttcagtttt atcaattttt tttattattt 2281 gctttctttt tgttaattaa ttttttgcag ccacatagac ctagatgtaa aatttaaatc 2341 gaaaacagaa acgcaaatgt caagaaaaaa acatttagca aaatgcaaca aaaattaaga 2401 agaaacactt gtatggaaaa ccaatcaatg aaaagcttc