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LOCUS NM_206607 2341 bp mRNA linear INV 26-DEC-2023 ACCESSION NM_206607 VERSION NM_206607.2 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 2341) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2341) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2341) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 2341) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 2341) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 2341) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 2341) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 2341) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 2341) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 2341) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 2341) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 2341) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 2341) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 2341) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 2341) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 2341) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 2341) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 2341) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 2341) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 2341) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 2341) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 2341) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 2341) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jan 16, 2013 this sequence version replaced NM_206607.1. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2341 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..2341 /gene="CG3857" /locus_tag="Dmel_CG3857" /gene_synonym="Dmel\CG3857; EG:39E1.3" /map="2B16-2B16" /db_xref="FLYBASE:FBgn0023520" /db_xref="GeneID:2768908" CDS 87..1550 /gene="CG3857" /locus_tag="Dmel_CG3857" /gene_synonym="Dmel\CG3857; EG:39E1.3" /note="CG3857 gene product from transcript CG3857-RA; CG3857-PA" /codon_start=1 /product="uncharacterized protein" /protein_id="NP_996330.1" /db_xref="FLYBASE:FBpp0070335" /db_xref="GeneID:2768908" /db_xref="FLYBASE:FBgn0023520" /translation="MADPRRRFRNKKRDEACSGLLAPVTIARREDAARMMQPKILLKK DRDREQETWDRERDKDRKLERDREAEPSPSCYPDTPPALKTMIVNRTGEVRPADRCQM PLAGGALVQGSGQLSAVPSSSVCAALVSSVPTSRDKGSCSGGAGTAGTSAGAPNALQE LQPPRMNRPTPLIVANGIFNANARKLFHKTNTDFTVIGVLGGQSSGKSTLLNLLAAER SLDYDYYQHLFSPEADECIFATRHKLKPNNGQKSILRPRTETLQFFITRERHILLDTP PLMPVGKDSDHQDLYSLGTMAQLLSVCHILILVIDGLALEQLRLINAALRLRPTLHCK GYVRDHMPQVVFVRARAHRIDFEIQQRERLDKKLAYLYGPTGLPIYRGRGDARCLNTF LLPEVSSNKATAFHSCLGELVRQFRERILGCTRISMCHTSTELSEAIWFEILAESARK AAPHFEKIYAEIKLRHLDTRCQWRSDNWRTFSSNAES" misc_feature 648..>1040 /gene="CG3857" /locus_tag="Dmel_CG3857" /gene_synonym="Dmel\CG3857; EG:39E1.3" /note="Members of the P-loop NTPase domain superfamily are characterized by a conserved nucleotide phosphate-binding motif, also referred to as the Walker A motif (GxxxxGK[S/T], where x is any residue), and the Walker B motif (hhhh[D/E], where h is a...; Region: P-loop containing Nucleoside Triphosphate Hydrolases; cl38936" /db_xref="CDD:476819" misc_feature 687..710 /gene="CG3857" /locus_tag="Dmel_CG3857" /gene_synonym="Dmel\CG3857; EG:39E1.3" /note="G1 box; other site" /db_xref="CDD:206648" misc_feature 798..806 /gene="CG3857" /locus_tag="Dmel_CG3857" /gene_synonym="Dmel\CG3857; EG:39E1.3" /note="Switch I region; other site" /db_xref="CDD:206648" misc_feature 906..917 /gene="CG3857" /locus_tag="Dmel_CG3857" /gene_synonym="Dmel\CG3857; EG:39E1.3" /note="G3 box; other site" /db_xref="CDD:206648" misc_feature order(912..917,990..995) /gene="CG3857" /locus_tag="Dmel_CG3857" /gene_synonym="Dmel\CG3857; EG:39E1.3" /note="Switch II region; other site" /db_xref="CDD:206648" ORIGIN 1 aacaatgtat tagcgttgac acccacgaac gtgttcaaac cgatttaaat ttagtcaaat 61 ataaacccca aataaccggc ttccgaatgg ctgatccccg tcgtcgtttc cgtaacaaaa 121 agcgggatga agcctgctcc ggcctcctgg cacccgtgac catcgcccgg cgcgaggacg 181 ccgcccgcat gatgcagcca aaaattctgc taaagaagga tcgcgatcgg gagcaagaga 241 cctgggacag agagcgggac aaggatagga agctggagag ggacagggag gcggagccaa 301 gtcccagttg ttaccccgat acaccgccgg ccctcaaaac gatgatcgtc aatcgtacgg 361 gtgaggtgcg gcctgcagac agatgccaga tgcctttggc cggaggtgct cttgtccagg 421 gaagcgggca attgtccgcc gtgccatcca gctccgtttg cgccgcattg gttagctcgg 481 taccaactag cagggacaag gggagctgca gtggtggtgc cggaacagct ggcacctcgg 541 ccggagcacc gaatgctctc caggagctgc agccgccacg catgaaccgt cccacacccc 601 taatcgtggc caatggtatt tttaatgcca atgcccgcaa gctcttccac aaaaccaata 661 cggacttcac cgtaatcggg gtcctgggtg gtcagagttc cggaaaaagc acgctgctca 721 atcttctggc cgcagagcgg tccctggact acgactacta tcaacatcta ttctctccag 781 aggcggatga atgcatcttt gccacgcgtc acaagttgaa gccgaacaat gggcagaaga 841 gcattttgcg tcctcgcacg gaaaccctgc agttttttat cacccgggaa cgtcacatac 901 tgctggacac accaccgtta atgcctgtag gcaaggactc ggatcaccag gatctttact 961 ccctgggcac catggcgcaa ctgttgagtg tatgccatat attaatttta gtcatcgatg 1021 gcttggcctt ggaacaattg cgtctgataa acgctgccct tcgcctgaga ccgacgcttc 1081 attgcaaagg ctatgtacgg gatcacatgc cgcaggtagt attcgtccgc gcgcgtgccc 1141 atcgaataga ctttgagata cagcagcggg aacgactgga caaaaagttg gcctacttat 1201 acgggccgac ggggctgccc atataccggg gaagaggcga tgcacggtgc ttaaacacct 1261 tcctcctgcc ggaggtgagt agcaacaaag ccaccgcttt ccattcctgc ctcggcgaac 1321 tggtgcgtca gttccgagaa cgtatcctcg gatgcacgcg catctctatg tgccacacca 1381 gcaccgaact cagtgaggcc atctggtttg agatcctggc cgaaagtgct cgcaaggcgg 1441 ctcctcattt cgaaaagatc tacgcagaga tcaagttgcg ccacctggac acacgctgcc 1501 agtggcgatc ggacaattgg cgcacgttct cttccaatgc cgaaagctga tccacagatt 1561 gtaagtacgc ggttggtata aaactatgca agtgggtgaa gcggcttgga ctgggatacg 1621 cagtcctgaa tcattcaagt gattcaagtt ccagtggcaa tgtttaccta tccttttatt 1681 aatgacacgt gcagtgttat ggccaatatg tttagctgaa taccgaccga catcaagtct 1741 tttttttaaa ggaggtgttt aaagttaaca tatgaatcag aagttgagat agtgactgat 1801 atacatattg ttttacagac atatccctaa ttaataaaag acttcaaaaa taattgtata 1861 gcatttacaa agaatagtat ttacattttg gagtttaggc ttaacgatta tccattttta 1921 tcagccgatt attaaagtta agaaccctct tcttgcgctc ttcgtcagga ctcaccagcg 1981 ctcggctctc gtgttttcgg gccccgtcag caggcgactc ggggcctgtc tagtaacatg 2041 ttcgtgtaag ttacgaaccc tcttcttgcg atcttcgtca ggactcacca gcgctcggct 2101 ctcgtgtttt cgggccccgt cagcaggcga ctcggggcct gtctaggaac atgtttgtgt 2161 atgtgtgcat tcggaacaag tgccgttggt cgcactcagg gtgaggggtc aacgggggaa 2221 gcggatataa aagcagcggg gcgggagaag aggcccagtc tcgaacggac acataacgga 2281 accgctagca gatcgcgaac tgaatcttaa aataaagcta atcgtaaact cgaaccctct 2341 t