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LOCUS NM_206598 3144 bp mRNA linear INV 26-DEC-2023 ACCESSION NM_206598 VERSION NM_206598.3 DBLINK BioProject: PRJNA164 BioSample: SAMN02803731 KEYWORDS RefSeq. SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (bases 1 to 3144) AUTHORS Matthews,B.B., Dos Santos,G., Crosby,M.A., Emmert,D.B., St Pierre,S.E., Gramates,L.S., Zhou,P., Schroeder,A.J., Falls,K., Strelets,V., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data JOURNAL G3 (Bethesda) 5 (8), 1721-1736 (2015) PUBMED 26109357 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3144) AUTHORS Crosby,M.A., Gramates,L.S., Dos Santos,G., Matthews,B.B., St Pierre,S.E., Zhou,P., Schroeder,A.J., Falls,K., Emmert,D.B., Russo,S.M. and Gelbart,W.M. CONSRTM FlyBase Consortium TITLE Gene Model Annotations for Drosophila melanogaster: The Rule-Benders JOURNAL G3 (Bethesda) 5 (8), 1737-1749 (2015) PUBMED 26109356 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3144) AUTHORS Hoskins,R.A., Carlson,J.W., Wan,K.H., Park,S., Mendez,I., Galle,S.E., Booth,B.W., Pfeiffer,B.D., George,R.A., Svirskas,R., Krzywinski,M., Schein,J., Accardo,M.C., Damia,E., Messina,G., Mendez-Lago,M., de Pablos,B., Demakova,O.V., Andreyeva,E.N., Boldyreva,L.V., Marra,M., Carvalho,A.B., Dimitri,P., Villasante,A., Zhimulev,I.F., Rubin,G.M., Karpen,G.H. and Celniker,S.E. TITLE The Release 6 reference sequence of the Drosophila melanogaster genome JOURNAL Genome Res 25 (3), 445-458 (2015) PUBMED 25589440 REFERENCE 4 (bases 1 to 3144) AUTHORS Hoskins,R.A., Carlson,J.W., Kennedy,C., Acevedo,D., Evans-Holm,M., Frise,E., Wan,K.H., Park,S., Mendez-Lago,M., Rossi,F., Villasante,A., Dimitri,P., Karpen,G.H. and Celniker,S.E. TITLE Sequence finishing and mapping of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1625-1628 (2007) PUBMED 17569867 REFERENCE 5 (bases 1 to 3144) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. TITLE The Release 5.1 annotation of Drosophila melanogaster heterochromatin JOURNAL Science 316 (5831), 1586-1591 (2007) PUBMED 17569856 REMARK Erratum:[Science. 2007 Sep 7;317(5843):1325] REFERENCE 6 (bases 1 to 3144) AUTHORS Quesneville,H., Bergman,C.M., Andrieu,O., Autard,D., Nouaud,D., Ashburner,M. and Anxolabehere,D. TITLE Combined evidence annotation of transposable elements in genome sequences JOURNAL PLoS Comput Biol 1 (2), 166-175 (2005) PUBMED 16110336 REFERENCE 7 (bases 1 to 3144) AUTHORS Hoskins,R.A., Smith,C.D., Carlson,J.W., Carvalho,A.B., Halpern,A., Kaminker,J.S., Kennedy,C., Mungall,C.J., Sullivan,B.A., Sutton,G.G., Yasuhara,J.C., Wakimoto,B.T., Myers,E.W., Celniker,S.E., Rubin,G.M. and Karpen,G.H. TITLE Heterochromatic sequences in a Drosophila whole-genome shotgun assembly JOURNAL Genome Biol 3 (12), RESEARCH0085 (2002) PUBMED 12537574 REFERENCE 8 (bases 1 to 3144) AUTHORS Kaminker,J.S., Bergman,C.M., Kronmiller,B., Carlson,J., Svirskas,R., Patel,S., Frise,E., Wheeler,D.A., Lewis,S.E., Rubin,G.M., Ashburner,M. and Celniker,S.E. TITLE The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective JOURNAL Genome Biol 3 (12), RESEARCH0084 (2002) PUBMED 12537573 REFERENCE 9 (bases 1 to 3144) AUTHORS Misra,S., Crosby,M.A., Mungall,C.J., Matthews,B.B., Campbell,K.S., Hradecky,P., Huang,Y., Kaminker,J.S., Millburn,G.H., Prochnik,S.E., Smith,C.D., Tupy,J.L., Whitfied,E.J., Bayraktaroglu,L., Berman,B.P., Bettencourt,B.R., Celniker,S.E., de Grey,A.D., Drysdale,R.A., Harris,N.L., Richter,J., Russo,S., Schroeder,A.J., Shu,S.Q., Stapleton,M., Yamada,C., Ashburner,M., Gelbart,W.M., Rubin,G.M. and Lewis,S.E. TITLE Annotation of the Drosophila melanogaster euchromatic genome: a systematic review JOURNAL Genome Biol 3 (12), RESEARCH0083 (2002) PUBMED 12537572 REFERENCE 10 (bases 1 to 3144) AUTHORS Celniker,S.E., Wheeler,D.A., Kronmiller,B., Carlson,J.W., Halpern,A., Patel,S., Adams,M., Champe,M., Dugan,S.P., Frise,E., Hodgson,A., George,R.A., Hoskins,R.A., Laverty,T., Muzny,D.M., Nelson,C.R., Pacleb,J.M., Park,S., Pfeiffer,B.D., Richards,S., Sodergren,E.J., Svirskas,R., Tabor,P.E., Wan,K., Stapleton,M., Sutton,G.G., Venter,C., Weinstock,G., Scherer,S.E., Myers,E.W., Gibbs,R.A. and Rubin,G.M. TITLE Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence JOURNAL Genome Biol 3 (12), RESEARCH0079 (2002) PUBMED 12537568 REFERENCE 11 (bases 1 to 3144) AUTHORS Adams,M.D., Celniker,S.E., Holt,R.A., Evans,C.A., Gocayne,J.D., Amanatides,P.G., Scherer,S.E., Li,P.W., Hoskins,R.A., Galle,R.F., George,R.A., Lewis,S.E., Richards,S., Ashburner,M., Henderson,S.N., Sutton,G.G., Wortman,J.R., Yandell,M.D., Zhang,Q., Chen,L.X., Brandon,R.C., Rogers,Y.H., Blazej,R.G., Champe,M., Pfeiffer,B.D., Wan,K.H., Doyle,C., Baxter,E.G., Helt,G., Nelson,C.R., Gabor,G.L., Abril,J.F., Agbayani,A., An,H.J., Andrews-Pfannkoch,C., Baldwin,D., Ballew,R.M., Basu,A., Baxendale,J., Bayraktaroglu,L., Beasley,E.M., Beeson,K.Y., Benos,P.V., Berman,B.P., Bhandari,D., Bolshakov,S., Borkova,D., Botchan,M.R., Bouck,J., Brokstein,P., Brottier,P., Burtis,K.C., Busam,D.A., Butler,H., Cadieu,E., Center,A., Chandra,I., Cherry,J.M., Cawley,S., Dahlke,C., Davenport,L.B., Davies,P., de Pablos,B., Delcher,A., Deng,Z., Mays,A.D., Dew,I., Dietz,S.M., Dodson,K., Doup,L.E., Downes,M., Dugan-Rocha,S., Dunkov,B.C., Dunn,P., Durbin,K.J., Evangelista,C.C., Ferraz,C., Ferriera,S., Fleischmann,W., Fosler,C., Gabrielian,A.E., Garg,N.S., Gelbart,W.M., Glasser,K., Glodek,A., Gong,F., Gorrell,J.H., Gu,Z., Guan,P., Harris,M., Harris,N.L., Harvey,D., Heiman,T.J., Hernandez,J.R., Houck,J., Hostin,D., Houston,K.A., Howland,T.J., Wei,M.H., Ibegwam,C., Jalali,M., Kalush,F., Karpen,G.H., Ke,Z., Kennison,J.A., Ketchum,K.A., Kimmel,B.E., Kodira,C.D., Kraft,C., Kravitz,S., Kulp,D., Lai,Z., Lasko,P., Lei,Y., Levitsky,A.A., Li,J., Li,Z., Liang,Y., Lin,X., Liu,X., Mattei,B., McIntosh,T.C., McLeod,M.P., McPherson,D., Merkulov,G., Milshina,N.V., Mobarry,C., Morris,J., Moshrefi,A., Mount,S.M., Moy,M., Murphy,B., Murphy,L., Muzny,D.M., Nelson,D.L., Nelson,D.R., Nelson,K.A., Nixon,K., Nusskern,D.R., Pacleb,J.M., Palazzolo,M., Pittman,G.S., Pan,S., Pollard,J., Puri,V., Reese,M.G., Reinert,K., Remington,K., Saunders,R.D., Scheeler,F., Shen,H., Shue,B.C., Siden-Kiamos,I., Simpson,M., Skupski,M.P., Smith,T., Spier,E., Spradling,A.C., Stapleton,M., Strong,R., Sun,E., Svirskas,R., Tector,C., Turner,R., Venter,E., Wang,A.H., Wang,X., Wang,Z.Y., Wassarman,D.A., Weinstock,G.M., Weissenbach,J., Williams,S.M., WoodageT, Worley,K.C., Wu,D., Yang,S., Yao,Q.A., Ye,J., Yeh,R.F., Zaveri,J.S., Zhan,M., Zhang,G., Zhao,Q., Zheng,L., Zheng,X.H., Zhong,F.N., Zhong,W., Zhou,X., Zhu,S., Zhu,X., Smith,H.O., Gibbs,R.A., Myers,E.W., Rubin,G.M. and Venter,J.C. TITLE The genome sequence of Drosophila melanogaster JOURNAL Science 287 (5461), 2185-2195 (2000) PUBMED 10731132 REFERENCE 12 (bases 1 to 3144) AUTHORS Celniker,S., Carlson,J., Wan,K., Pfeiffer,B., Frise,E., George,R., Hoskins,R., Stapleton,M., Pacleb,J., Park,S., Svirskas,R., Smith,E., Yu,C. and Rubin,G. CONSRTM Berkeley Drosophila Genome Project TITLE Drosophila melanogaster release 4 sequence JOURNAL Unpublished REFERENCE 13 (bases 1 to 3144) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (20-DEC-2023) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 14 (bases 1 to 3144) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (13-DEC-2023) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 15 (bases 1 to 3144) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 16 (bases 1 to 3144) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (20-APR-2020) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 17 (bases 1 to 3144) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (22-APR-2019) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 18 (bases 1 to 3144) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (24-MAY-2018) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 19 (bases 1 to 3144) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (07-DEC-2016) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave, Cambridge, MA 02138, USA REFERENCE 20 (bases 1 to 3144) AUTHORS Celniker,S., Carlson,J., Kennedy,C., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Karpen,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One #Cyclotron RoadOne Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 21 (bases 1 to 3144) AUTHORS Celniker,S., Carlson,J., Wan,K., Frise,E., Hoskins,R., Park,S., Svirskas,R. and Rubin,G. TITLE Direct Submission JOURNAL Submitted (10-AUG-2006) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, MS 64-121, Berkeley, CA 94720, USA REMARK Direct Submission REFERENCE 22 (bases 1 to 3144) AUTHORS Smith,C.D., Shu,S., Mungall,C.J. and Karpen,G.H. CONSRTM Drosophila Heterochromatin Genome Project TITLE Direct Submission JOURNAL Submitted (01-AUG-2006) Drosophila Heterochromatin Genome Project, Ernest Orlando Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mailstop 64-121, Berkeley, CA 94720, USA REFERENCE 23 (bases 1 to 3144) AUTHORS Adams,M.D., Celniker,S.E., Gibbs,R.A., Rubin,G.M. and Venter,C.J. TITLE Direct Submission JOURNAL Submitted (21-MAR-2000) Celera Genomics, 45 West Gude Drive, Rockville, MD 20850, USA COMMENT REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NC_004354). On Jul 15, 2014 this sequence version replaced NM_206598.2. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.54 URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3144 /organism="Drosophila melanogaster" /mol_type="mRNA" /db_xref="taxon:7227" /chromosome="X" /genotype="y[1]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] MstProx[1] GstD5[1] Rh6[1]" gene 1..3144 /gene="svr" /locus_tag="Dmel_CG4122" /gene_synonym="cc; CG18503; CG32818; CG4122; CP; CPD; CpepE; CypD; Dmel\CG4122; dwp; EG:171D11.3; EP(X)0356; l(1)1Bd; poi; slv" /note="silver" /map="1B5-1B7" /db_xref="FLYBASE:FBgn0004648" /db_xref="GeneID:30998" CDS 495..1796 /gene="svr" /locus_tag="Dmel_CG4122" /gene_synonym="cc; CG18503; CG32818; CG4122; CP; CPD; CpepE; CypD; Dmel\CG4122; dwp; EG:171D11.3; EP(X)0356; l(1)1Bd; poi; slv" /EC_number="3.4.17.-" /note="CG4122 gene product from transcript CG4122-RE; CG4122-PE; svr-PE; carboxypeptidase E; pointed; DmSilver; chlorotic; carboxypeptidase D; silver; dwarp" /codon_start=1 /product="silver, isoform E" /protein_id="NP_996321.1" /db_xref="FLYBASE:FBpp0089124" /db_xref="GeneID:30998" /db_xref="FLYBASE:FBgn0004648" /translation="MLFFCLALIIGCAVGEYSEVRVIQEEDNFLESPHYLKNEEIGDL FSQLAKDYPDLAQTYTIGKSLEDRPIYALALSAPTGESKNGDLLRPMVKLVANIQGDE AVGRQMVLYMAEYLATHYDGDPKVQALLNLTEIHFLPTCNPDGFAKAKEGNCESLPNY VGRGNAANIDLNRDFPDRLEQSHVHQLRAQSRQPETAALVNWIVSKPFVLSANFHGGA VVASYPYDNSLAHNECCEESLTPDDRVFKQLAHTYSDNHPIMRKGNNCNDSFSGGITN GAHWYELSGGMQDFNYAFSNCFELTIELSCCKYPAASTLPQEWQRNKASLLQLLRQAH IGIKGLVTDASGFPIADANVYVAGLEEKPMRTSKRGEYWRLLTPGLYSVHASAFGYQT SAPQQVRVTNDNQEALRLDFKLAPVETNFDGISSFYSPYYF" misc_feature 597..1490 /gene="svr" /locus_tag="Dmel_CG4122" /gene_synonym="cc; CG18503; CG32818; CG4122; CP; CPD; CpepE; CypD; Dmel\CG4122; dwp; EG:171D11.3; EP(X)0356; l(1)1Bd; poi; slv" /note="Peptidase M14 carboxypeptidase subfamily N/E-like; Carboxypeptidase D, domain I subgroup; Region: M14_CPD_I; cd03868" /db_xref="CDD:349440" misc_feature order(789..791,798..800,981..983,1008..1013,1137..1142, 1158..1160,1170..1172,1323..1325,1335..1337,1341..1343, 1401..1403) /gene="svr" /locus_tag="Dmel_CG4122" /gene_synonym="cc; CG18503; CG32818; CG4122; CP; CPD; CpepE; CypD; Dmel\CG4122; dwp; EG:171D11.3; EP(X)0356; l(1)1Bd; poi; slv" /note="active site" /db_xref="CDD:349440" misc_feature 1500..1736 /gene="svr" /locus_tag="Dmel_CG4122" /gene_synonym="cc; CG18503; CG32818; CG4122; CP; CPD; CpepE; CypD; Dmel\CG4122; dwp; EG:171D11.3; EP(X)0356; l(1)1Bd; poi; slv" /note="Peptidase associated domain: C-terminal domain of M14 N/E carboxypeptidase; putative folding, regulation, or interaction domain; Region: Peptidase_M14NE-CP-C_like; cd11308" /db_xref="CDD:200604" ORIGIN 1 catctgatcg cagccgagtg gcaacagtgg tcgctgctgc gttcgcgtac tttcgtgact 61 tcatttgcga ttttatttat attctccgtg ttgcgaataa aatgtatgta tcatggcagt 121 tgtttaagaa gcgaatatac gctgattcat cctaggctgg cgagaagatc attgcgaaaa 181 aagtgtacga aaagaaagtg caataactgc agctctattg tgcgcgcatc tgggtgtgcg 241 tagatctttg catcggtgtg tcggtgtttt tttacgtttg tgtgcgtggc gtgcccacat 301 ttgtggcaca agtttaaaaa ttggcactaa gaaagttcaa gaaagtggtt ctggggaaaa 361 tagttcattc attcagcatc cactttctgt tgaaagtggc gcgcctgcgt tttgtgtctt 421 aatcatcgca ttgctgcctg cctacgtgta cagaaactgc gagcgctccg ggagagtccc 481 cgagaatccc caaaatgttg tttttctgcc tagccttgat catcggctgc gcagtcggag 541 aatacagcga agtccgggtc atccaggaag aggacaactt cctggagagt cctcactacc 601 taaaaaacga ggaaatagga gatcttttca gccagctagc caaggattac cccgacttgg 661 cgcagaccta tacaataggc aaatccctgg aggatcgacc catctacgcc ctagccttaa 721 gtgcacctac cggggagtcc aagaatggag atctcctaag gccaatggtt aaactggtgg 781 ccaacataca aggcgatgaa gccgtgggtc gtcagatggt tctctatatg gccgaatacc 841 tggccaccca ctacgatggg gacccgaagg tccaggcgct actaaatctc accgaaatcc 901 acttcctgcc cacctgtaac cccgatggat tcgccaaagc caaggaaggc aactgcgagt 961 cgctgcccaa ctatgtgggt cgtggcaatg cggccaacat cgatttgaat cgcgatttcc 1021 ccgatcgcct ggagcagagc catgtccacc agttgcgcgc ccagtctcgt cagccggaaa 1081 cagcagccct ggtaaattgg atcgttagca aaccgtttgt gctctccgcc aatttccatg 1141 gcggagctgt tgtggccagc tatccctatg acaactcctt ggctcacaat gagtgctgcg 1201 aggagagttt gactccggat gatcgggtct tcaagcagct ggcccacacc tattctgaca 1261 accatccgat tatgagaaag ggcaacaatt gcaacgatag cttctcggga ggtatcacca 1321 acggagccca ctggtatgag ttgtccggtg gaatgcagga ctttaactat gcgtttagca 1381 actgtttcga gctgaccatc gagttgtcgt gctgcaagta tccggcagca agcactttgc 1441 cccaggaatg gcagcggaac aaggcatccc tgctgcagct gctgcgccag gcacatatcg 1501 gcatcaaggg cctggtgacc gatgccagtg gctttccaat agccgatgcc aatgtctacg 1561 tggctggact agaggagaaa cccatgcgca cttccaaacg tggcgaatac tggaggcttt 1621 tgaccccggg actctatagc gtgcacgcct ccgcttttgg ttaccagacc agtgccccgc 1681 aacaggtccg ggtgaccaac gataaccagg aggccttgcg cctggacttt aagcttgcgc 1741 ccgtcgagac gaactttgat ggtattagca gtttttacag tccctattat ttctagagag 1801 ggatgcaacg gaaataccta tatatatgcg catatatatt atattgggca gttccaaaat 1861 gctatacata tatccacatt tagcgatgca tagtattctc tgctctcctg ccctctccgc 1921 actatccttg tactatatat gttatctccg ccattcccga atccagatat acaaccattt 1981 tgcatgttca tttgctccct ctcatttaga acctttattt gtttaccgcg agagctagca 2041 gaaaataaac aatgttggct gtcgtgtgga tgaattggtt tggttttgtc tcgaatcttt 2101 tgtacataca cttttttaat ttatctttta aaaacttctg tttcattttt atgttttttt 2161 cgcattttca tacgcttata tgccagccta tgttccttcc acgccattac ttcagacgcg 2221 cacatattta gtggatgctt gatttgtata tagagaacgt attaagaaca aacacgaaga 2281 aatagcaaac caaataacga aatgaaataa attaaggaaa taagcgaatt gtacttaggc 2341 aatatgcaga aattggccca cttatggtca tcgaatgaca cattcccaat acgaatcggt 2401 tatagcttta tcaatattcc ccttatcttc cgcacaccct aaaacatatt gtcaagtatt 2461 ttagcaacga tgcaaaaaaa ctatgataaa tccaaagccc actacatgaa cctactgcta 2521 aatatactgt atactaaata gactgtatgc gcactctatg gttagtccta tctggaatga 2581 ttgttgagca tttatccaaa aacaaaagaa cctacatttg atagtgaggc gaaattatta 2641 tcaattccgg tccgacgcgt gctcacgcat ggcttttgat atatactata gacgagaaca 2701 ggttacaatc aaatgaagaa tattgcaatg gcgagaacct tgcgaagtat aaataaaata 2761 ttaatgttcg cttgctgcgt tttattttca ttcattgctc tttaattcgg tctctaaatg 2821 aattttttgt tttcgagcac attattggtg ttttcaaaat ctggtgcagt gttttattaa 2881 tcactcgttt ttgaaaaaaa tgagatttta tttgagatca ttttcaattc attaatcatc 2941 gaattcagga catatttttt ctttattctg atctttagca attttacttt ctttttggtt 3001 tcgcagtacg acttagtttt tccatttttc ttttgtttca aaggccttat atgtagccta 3061 acggtggagt catggttagg gacgttcaag aaactcccag tcacatctaa atgaaattta 3121 aaatgtatct ttcactaagt acct